co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G10360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
2	GO:0044843: cell cycle G1/S phase transition	0.00E+00
3	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
4	GO:0070918: production of small RNA involved in gene silencing by RNA	0.00E+00
5	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
6	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
7	GO:0090239: regulation of histone H4 acetylation	0.00E+00
8	GO:0006412: translation	1.87E-162
9	GO:0042254: ribosome biogenesis	4.50E-55
10	GO:0000027: ribosomal large subunit assembly	1.29E-14
11	GO:0006626: protein targeting to mitochondrion	8.47E-08
12	GO:0000028: ribosomal small subunit assembly	2.69E-07
13	GO:0009955: adaxial/abaxial pattern specification	7.87E-06
14	GO:0009967: positive regulation of signal transduction	7.99E-06
15	GO:1902626: assembly of large subunit precursor of preribosome	2.76E-05
16	GO:0002181: cytoplasmic translation	2.76E-05
17	GO:0030150: protein import into mitochondrial matrix	2.26E-04
18	GO:0009735: response to cytokinin	2.34E-04
19	GO:0030490: maturation of SSU-rRNA	4.23E-04
20	GO:0000494: box C/D snoRNA 3'-end processing	4.23E-04
21	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.23E-04
22	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	4.23E-04
23	GO:1990258: histone glutamine methylation	4.23E-04
24	GO:0006407: rRNA export from nucleus	4.23E-04
25	GO:0015801: aromatic amino acid transport	4.23E-04
26	GO:0006414: translational elongation	8.05E-04
27	GO:0000387: spliceosomal snRNP assembly	8.68E-04
28	GO:0048569: post-embryonic animal organ development	9.16E-04
29	GO:0043981: histone H4-K5 acetylation	9.16E-04
30	GO:0051788: response to misfolded protein	9.16E-04
31	GO:0015786: UDP-glucose transport	9.16E-04
32	GO:0006820: anion transport	1.33E-03
33	GO:0045793: positive regulation of cell size	1.49E-03
34	GO:0015783: GDP-fucose transport	1.49E-03
35	GO:0010476: gibberellin mediated signaling pathway	1.49E-03
36	GO:0042256: mature ribosome assembly	1.49E-03
37	GO:0009150: purine ribonucleotide metabolic process	1.49E-03
38	GO:0009651: response to salt stress	2.08E-03
39	GO:0046513: ceramide biosynthetic process	2.15E-03
40	GO:0032877: positive regulation of DNA endoreduplication	2.15E-03
41	GO:0006166: purine ribonucleoside salvage	2.15E-03
42	GO:0070301: cellular response to hydrogen peroxide	2.15E-03
43	GO:0006241: CTP biosynthetic process	2.15E-03
44	GO:0072334: UDP-galactose transmembrane transport	2.15E-03
45	GO:0006165: nucleoside diphosphate phosphorylation	2.15E-03
46	GO:0006228: UTP biosynthetic process	2.15E-03
47	GO:0006164: purine nucleotide biosynthetic process	2.15E-03
48	GO:0009647: skotomorphogenesis	2.15E-03
49	GO:0006168: adenine salvage	2.15E-03
50	GO:0006413: translational initiation	2.87E-03
51	GO:0051781: positive regulation of cell division	2.89E-03
52	GO:0042274: ribosomal small subunit biogenesis	2.89E-03
53	GO:0006183: GTP biosynthetic process	2.89E-03
54	GO:0010363: regulation of plant-type hypersensitive response	2.89E-03
55	GO:0006621: protein retention in ER lumen	2.89E-03
56	GO:0071215: cellular response to abscisic acid stimulus	3.42E-03
57	GO:1902183: regulation of shoot apical meristem development	3.71E-03
58	GO:0044209: AMP salvage	3.71E-03
59	GO:0071493: cellular response to UV-B	3.71E-03
60	GO:0031167: rRNA methylation	3.71E-03
61	GO:0000413: protein peptidyl-prolyl isomerization	4.35E-03
62	GO:0006364: rRNA processing	4.53E-03
63	GO:0000470: maturation of LSU-rRNA	4.59E-03
64	GO:0043248: proteasome assembly	4.59E-03
65	GO:0000741: karyogamy	4.59E-03
66	GO:0045040: protein import into mitochondrial outer membrane	4.59E-03
67	GO:0051603: proteolysis involved in cellular protein catabolic process	4.73E-03
68	GO:0009749: response to glucose	5.42E-03
69	GO:0009554: megasporogenesis	5.53E-03
70	GO:0009648: photoperiodism	5.53E-03
71	GO:1901001: negative regulation of response to salt stress	5.53E-03
72	GO:0048528: post-embryonic root development	6.54E-03
73	GO:0050821: protein stabilization	7.60E-03
74	GO:0031540: regulation of anthocyanin biosynthetic process	7.60E-03
75	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	7.60E-03
76	GO:0009690: cytokinin metabolic process	7.60E-03
77	GO:0000398: mRNA splicing, via spliceosome	8.54E-03
78	GO:0001510: RNA methylation	8.73E-03
79	GO:0001558: regulation of cell growth	8.73E-03
80	GO:0010204: defense response signaling pathway, resistance gene-independent	8.73E-03
81	GO:0044030: regulation of DNA methylation	8.73E-03
82	GO:0006189: 'de novo' IMP biosynthetic process	9.92E-03
83	GO:0015780: nucleotide-sugar transport	9.92E-03
84	GO:0098656: anion transmembrane transport	9.92E-03
85	GO:0007338: single fertilization	9.92E-03
86	GO:0009245: lipid A biosynthetic process	9.92E-03
87	GO:0042761: very long-chain fatty acid biosynthetic process	1.12E-02
88	GO:0009793: embryo development ending in seed dormancy	1.21E-02
89	GO:0010043: response to zinc ion	1.27E-02
90	GO:0046686: response to cadmium ion	1.28E-02
91	GO:0010015: root morphogenesis	1.38E-02
92	GO:0006913: nucleocytoplasmic transport	1.38E-02
93	GO:0015770: sucrose transport	1.38E-02
94	GO:0006790: sulfur compound metabolic process	1.52E-02
95	GO:2000028: regulation of photoperiodism, flowering	1.66E-02
96	GO:0010102: lateral root morphogenesis	1.66E-02
97	GO:0048467: gynoecium development	1.81E-02
98	GO:0002237: response to molecule of bacterial origin	1.81E-02
99	GO:0008283: cell proliferation	1.81E-02
100	GO:0006446: regulation of translational initiation	1.81E-02
101	GO:0009644: response to high light intensity	1.95E-02
102	GO:0009965: leaf morphogenesis	2.03E-02
103	GO:0009116: nucleoside metabolic process	2.29E-02
104	GO:0006289: nucleotide-excision repair	2.29E-02
105	GO:0051302: regulation of cell division	2.45E-02
106	GO:0009409: response to cold	2.53E-02
107	GO:0015992: proton transport	2.62E-02
108	GO:0051260: protein homooligomerization	2.62E-02
109	GO:0010431: seed maturation	2.62E-02
110	GO:0006306: DNA methylation	2.62E-02
111	GO:0003333: amino acid transmembrane transport	2.62E-02
112	GO:0007005: mitochondrion organization	2.80E-02
113	GO:0040007: growth	2.98E-02
114	GO:0009908: flower development	3.14E-02
115	GO:0010584: pollen exine formation	3.16E-02
116	GO:0008033: tRNA processing	3.54E-02
117	GO:0010197: polar nucleus fusion	3.73E-02
118	GO:0010183: pollen tube guidance	4.13E-02
119	GO:0048825: cotyledon development	4.13E-02
120	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.33E-02
121	GO:0000302: response to reactive oxygen species	4.33E-02
122	GO:0032502: developmental process	4.54E-02
123	GO:0009845: seed germination	4.68E-02
124	GO:0030163: protein catabolic process	4.75E-02
125	GO:0009567: double fertilization forming a zygote and endosperm	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
2	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
3	GO:0003735: structural constituent of ribosome	2.95E-196
4	GO:0003729: mRNA binding	2.80E-40
5	GO:0019843: rRNA binding	1.22E-16
6	GO:0005078: MAP-kinase scaffold activity	7.99E-06
7	GO:0008097: 5S rRNA binding	5.99E-05
8	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.32E-04
9	GO:0004298: threonine-type endopeptidase activity	2.96E-04
10	GO:0003746: translation elongation factor activity	3.43E-04
11	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	4.23E-04
12	GO:1990259: histone-glutamine methyltransferase activity	4.23E-04
13	GO:0000824: inositol tetrakisphosphate 3-kinase activity	4.23E-04
14	GO:0047326: inositol tetrakisphosphate 5-kinase activity	4.23E-04
15	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	4.23E-04
16	GO:0005080: protein kinase C binding	4.23E-04
17	GO:0015288: porin activity	5.03E-04
18	GO:0008308: voltage-gated anion channel activity	6.14E-04
19	GO:0001055: RNA polymerase II activity	8.68E-04
20	GO:0050291: sphingosine N-acyltransferase activity	9.16E-04
21	GO:0004618: phosphoglycerate kinase activity	9.16E-04
22	GO:0015173: aromatic amino acid transmembrane transporter activity	9.16E-04
23	GO:0001054: RNA polymerase I activity	1.16E-03
24	GO:0001056: RNA polymerase III activity	1.33E-03
25	GO:0005457: GDP-fucose transmembrane transporter activity	1.49E-03
26	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.49E-03
27	GO:0032947: protein complex scaffold	1.49E-03
28	GO:0008649: rRNA methyltransferase activity	1.49E-03
29	GO:0015266: protein channel activity	1.51E-03
30	GO:0008233: peptidase activity	2.10E-03
31	GO:0047627: adenylylsulfatase activity	2.15E-03
32	GO:0003999: adenine phosphoribosyltransferase activity	2.15E-03
33	GO:0005460: UDP-glucose transmembrane transporter activity	2.15E-03
34	GO:0004550: nucleoside diphosphate kinase activity	2.15E-03
35	GO:0003723: RNA binding	2.36E-03
36	GO:0010011: auxin binding	2.89E-03
37	GO:0046923: ER retention sequence binding	2.89E-03
38	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.89E-03
39	GO:0070628: proteasome binding	2.89E-03
40	GO:0005459: UDP-galactose transmembrane transporter activity	3.71E-03
41	GO:0005275: amine transmembrane transporter activity	3.71E-03
42	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.53E-03
43	GO:0031593: polyubiquitin binding	4.59E-03
44	GO:0031177: phosphopantetheine binding	4.59E-03
45	GO:0004872: receptor activity	5.42E-03
46	GO:0000035: acyl binding	5.53E-03
47	GO:0004656: procollagen-proline 4-dioxygenase activity	5.53E-03
48	GO:0005338: nucleotide-sugar transmembrane transporter activity	6.54E-03
49	GO:0008235: metalloexopeptidase activity	6.54E-03
50	GO:0030515: snoRNA binding	6.54E-03
51	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	7.60E-03
52	GO:0043022: ribosome binding	7.60E-03
53	GO:0044183: protein binding involved in protein folding	1.38E-02
54	GO:0008794: arsenate reductase (glutaredoxin) activity	1.38E-02
55	GO:0008515: sucrose transmembrane transporter activity	1.38E-02
56	GO:0003743: translation initiation factor activity	1.74E-02
57	GO:0051119: sugar transmembrane transporter activity	1.96E-02
58	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.11E-02
59	GO:0031418: L-ascorbic acid binding	2.29E-02
60	GO:0043130: ubiquitin binding	2.29E-02
61	GO:0051087: chaperone binding	2.45E-02
62	GO:0008514: organic anion transmembrane transporter activity	3.16E-02
63	GO:0000166: nucleotide binding	3.63E-02
64	GO:0003684: damaged DNA binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0043186: P granule	0.00E+00
2	GO:0005840: ribosome	2.40E-129
3	GO:0022626: cytosolic ribosome	7.34E-124
4	GO:0022625: cytosolic large ribosomal subunit	1.12E-119
5	GO:0022627: cytosolic small ribosomal subunit	1.75E-79
6	GO:0005737: cytoplasm	1.94E-41
7	GO:0005829: cytosol	5.85E-40
8	GO:0005730: nucleolus	4.19E-39
9	GO:0009506: plasmodesma	4.98E-32
10	GO:0015934: large ribosomal subunit	8.05E-23
11	GO:0005774: vacuolar membrane	1.56E-21
12	GO:0016020: membrane	2.42E-14
13	GO:0015935: small ribosomal subunit	3.85E-14
14	GO:0005773: vacuole	2.35E-13
15	GO:0005618: cell wall	1.04E-09
16	GO:0009507: chloroplast	2.65E-07
17	GO:0005886: plasma membrane	9.05E-07
18	GO:0000502: proteasome complex	1.19E-05
19	GO:0005665: DNA-directed RNA polymerase II, core complex	9.65E-05
20	GO:0019013: viral nucleocapsid	1.17E-04
21	GO:0000419: DNA-directed RNA polymerase V complex	1.95E-04
22	GO:0005839: proteasome core complex	2.96E-04
23	GO:0030686: 90S preribosome	4.23E-04
24	GO:0046930: pore complex	6.14E-04
25	GO:0005742: mitochondrial outer membrane translocase complex	6.14E-04
26	GO:0005736: DNA-directed RNA polymerase I complex	7.36E-04
27	GO:0005666: DNA-directed RNA polymerase III complex	8.68E-04
28	GO:0015030: Cajal body	8.68E-04
29	GO:0000418: DNA-directed RNA polymerase IV complex	1.01E-03
30	GO:0034719: SMN-Sm protein complex	1.49E-03
31	GO:0005853: eukaryotic translation elongation factor 1 complex	1.49E-03
32	GO:0005732: small nucleolar ribonucleoprotein complex	1.58E-03
33	GO:0005758: mitochondrial intermembrane space	2.36E-03
34	GO:0005741: mitochondrial outer membrane	2.86E-03
35	GO:0016471: vacuolar proton-transporting V-type ATPase complex	2.89E-03
36	GO:0005682: U5 snRNP	2.89E-03
37	GO:0005687: U4 snRNP	3.71E-03
38	GO:0097526: spliceosomal tri-snRNP complex	3.71E-03
39	GO:0005851: eukaryotic translation initiation factor 2B complex	4.59E-03
40	GO:0031428: box C/D snoRNP complex	4.59E-03
41	GO:0005689: U12-type spliceosomal complex	5.53E-03
42	GO:0016272: prefoldin complex	5.53E-03
43	GO:0005681: spliceosomal complex	5.61E-03
44	GO:0005834: heterotrimeric G-protein complex	6.09E-03
45	GO:0071004: U2-type prespliceosome	7.60E-03
46	GO:0030529: intracellular ribonucleoprotein complex	8.41E-03
47	GO:0005685: U1 snRNP	9.92E-03
48	GO:0071011: precatalytic spliceosome	1.12E-02
49	GO:0005686: U2 snRNP	1.24E-02
50	GO:0005852: eukaryotic translation initiation factor 3 complex	1.38E-02
51	GO:0008541: proteasome regulatory particle, lid subcomplex	1.38E-02
52	GO:0071013: catalytic step 2 spliceosome	1.38E-02
53	GO:0048471: perinuclear region of cytoplasm	1.38E-02
54	GO:0005743: mitochondrial inner membrane	1.39E-02
55	GO:0032040: small-subunit processome	1.52E-02
56	GO:0031307: integral component of mitochondrial outer membrane	1.52E-02
57	GO:0070469: respiratory chain	2.45E-02
58	GO:0005622: intracellular	3.12E-02
59	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.16E-02
60	GO:0005654: nucleoplasm	4.22E-02
61	GO:0016592: mediator complex	4.54E-02