co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G09830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032780: negative regulation of ATPase activity	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
4	GO:0032928: regulation of superoxide anion generation	0.00E+00
5	GO:0046085: adenosine metabolic process	0.00E+00
6	GO:0009236: cobalamin biosynthetic process	0.00E+00
7	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
8	GO:0006720: isoprenoid metabolic process	0.00E+00
9	GO:0048870: cell motility	0.00E+00
10	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
11	GO:0009853: photorespiration	6.26E-09
12	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	9.83E-08
13	GO:0006412: translation	3.23E-06
14	GO:0042254: ribosome biogenesis	1.18E-05
15	GO:0015991: ATP hydrolysis coupled proton transport	5.25E-05
16	GO:0006555: methionine metabolic process	2.60E-04
17	GO:0006796: phosphate-containing compound metabolic process	2.60E-04
18	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.60E-04
19	GO:0019509: L-methionine salvage from methylthioadenosine	3.49E-04
20	GO:0016226: iron-sulfur cluster assembly	3.87E-04
21	GO:0006099: tricarboxylic acid cycle	4.39E-04
22	GO:0034599: cellular response to oxidative stress	4.39E-04
23	GO:2001006: regulation of cellulose biosynthetic process	4.56E-04
24	GO:0019354: siroheme biosynthetic process	4.56E-04
25	GO:0016487: farnesol metabolic process	4.56E-04
26	GO:0016031: tRNA import into mitochondrion	4.56E-04
27	GO:0009240: isopentenyl diphosphate biosynthetic process	4.56E-04
28	GO:0043407: negative regulation of MAP kinase activity	4.56E-04
29	GO:0031539: positive regulation of anthocyanin metabolic process	4.56E-04
30	GO:0031468: nuclear envelope reassembly	4.56E-04
31	GO:0000066: mitochondrial ornithine transport	4.56E-04
32	GO:0000028: ribosomal small subunit assembly	5.61E-04
33	GO:0006662: glycerol ether metabolic process	6.55E-04
34	GO:0010099: regulation of photomorphogenesis	6.84E-04
35	GO:0022900: electron transport chain	6.84E-04
36	GO:0006452: translational frameshifting	9.85E-04
37	GO:0018315: molybdenum incorporation into molybdenum-molybdopterin complex	9.85E-04
38	GO:0007163: establishment or maintenance of cell polarity	9.85E-04
39	GO:0006432: phenylalanyl-tRNA aminoacylation	9.85E-04
40	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	9.85E-04
41	GO:0051252: regulation of RNA metabolic process	9.85E-04
42	GO:0045905: positive regulation of translational termination	9.85E-04
43	GO:0071668: plant-type cell wall assembly	9.85E-04
44	GO:0019441: tryptophan catabolic process to kynurenine	9.85E-04
45	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	9.85E-04
46	GO:0050992: dimethylallyl diphosphate biosynthetic process	9.85E-04
47	GO:0045901: positive regulation of translational elongation	9.85E-04
48	GO:0016122: xanthophyll metabolic process	9.85E-04
49	GO:0006914: autophagy	1.09E-03
50	GO:0006790: sulfur compound metabolic process	1.48E-03
51	GO:0032786: positive regulation of DNA-templated transcription, elongation	1.60E-03
52	GO:0034051: negative regulation of plant-type hypersensitive response	1.60E-03
53	GO:0008333: endosome to lysosome transport	1.60E-03
54	GO:0009150: purine ribonucleotide metabolic process	1.60E-03
55	GO:0015940: pantothenate biosynthetic process	1.60E-03
56	GO:0071492: cellular response to UV-A	1.60E-03
57	GO:0045793: positive regulation of cell size	1.60E-03
58	GO:0006760: folic acid-containing compound metabolic process	1.60E-03
59	GO:0034227: tRNA thio-modification	1.60E-03
60	GO:0006107: oxaloacetate metabolic process	2.32E-03
61	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.32E-03
62	GO:0009399: nitrogen fixation	2.32E-03
63	GO:1901332: negative regulation of lateral root development	2.32E-03
64	GO:0009963: positive regulation of flavonoid biosynthetic process	2.32E-03
65	GO:0051131: chaperone-mediated protein complex assembly	2.32E-03
66	GO:0032877: positive regulation of DNA endoreduplication	2.32E-03
67	GO:0006406: mRNA export from nucleus	2.63E-03
68	GO:0006487: protein N-linked glycosylation	2.63E-03
69	GO:0071486: cellular response to high light intensity	3.12E-03
70	GO:0051781: positive regulation of cell division	3.12E-03
71	GO:0009765: photosynthesis, light harvesting	3.12E-03
72	GO:0071249: cellular response to nitrate	3.12E-03
73	GO:0006221: pyrimidine nucleotide biosynthetic process	3.12E-03
74	GO:0006542: glutamine biosynthetic process	3.12E-03
75	GO:0015976: carbon utilization	3.12E-03
76	GO:0015992: proton transport	3.20E-03
77	GO:0045454: cell redox homeostasis	3.63E-03
78	GO:0015031: protein transport	3.88E-03
79	GO:0030041: actin filament polymerization	4.00E-03
80	GO:0010117: photoprotection	4.00E-03
81	GO:0097428: protein maturation by iron-sulfur cluster transfer	4.00E-03
82	GO:0042147: retrograde transport, endosome to Golgi	4.50E-03
83	GO:0043248: proteasome assembly	4.95E-03
84	GO:0033365: protein localization to organelle	4.95E-03
85	GO:0007035: vacuolar acidification	4.95E-03
86	GO:0009117: nucleotide metabolic process	4.95E-03
87	GO:0055114: oxidation-reduction process	5.55E-03
88	GO:0015986: ATP synthesis coupled proton transport	5.65E-03
89	GO:0000054: ribosomal subunit export from nucleus	5.98E-03
90	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	7.07E-03
91	GO:0009396: folic acid-containing compound biosynthetic process	7.07E-03
92	GO:0022904: respiratory electron transport chain	7.07E-03
93	GO:0010090: trichome morphogenesis	7.40E-03
94	GO:0016569: covalent chromatin modification	7.60E-03
95	GO:0009787: regulation of abscisic acid-activated signaling pathway	8.23E-03
96	GO:0006506: GPI anchor biosynthetic process	8.23E-03
97	GO:0045010: actin nucleation	8.23E-03
98	GO:0040029: regulation of gene expression, epigenetic	8.23E-03
99	GO:0009808: lignin metabolic process	9.45E-03
100	GO:0046685: response to arsenic-containing substance	1.07E-02
101	GO:0009245: lipid A biosynthetic process	1.07E-02
102	GO:0006754: ATP biosynthetic process	1.07E-02
103	GO:0048589: developmental growth	1.07E-02
104	GO:0000902: cell morphogenesis	1.07E-02
105	GO:0006888: ER to Golgi vesicle-mediated transport	1.11E-02
106	GO:0000387: spliceosomal snRNP assembly	1.21E-02
107	GO:0035999: tetrahydrofolate interconversion	1.21E-02
108	GO:0010267: production of ta-siRNAs involved in RNA interference	1.21E-02
109	GO:1900865: chloroplast RNA modification	1.21E-02
110	GO:0006325: chromatin organization	1.35E-02
111	GO:0000103: sulfate assimilation	1.35E-02
112	GO:0009688: abscisic acid biosynthetic process	1.35E-02
113	GO:0043069: negative regulation of programmed cell death	1.35E-02
114	GO:0006886: intracellular protein transport	1.41E-02
115	GO:0010015: root morphogenesis	1.49E-02
116	GO:0010152: pollen maturation	1.64E-02
117	GO:0016925: protein sumoylation	1.64E-02
118	GO:0006829: zinc II ion transport	1.80E-02
119	GO:0006807: nitrogen compound metabolic process	1.80E-02
120	GO:0009691: cytokinin biosynthetic process	1.80E-02
121	GO:0006108: malate metabolic process	1.80E-02
122	GO:0006094: gluconeogenesis	1.80E-02
123	GO:0048440: carpel development	1.96E-02
124	GO:0002237: response to molecule of bacterial origin	1.96E-02
125	GO:0007030: Golgi organization	2.13E-02
126	GO:0042753: positive regulation of circadian rhythm	2.30E-02
127	GO:2000377: regulation of reactive oxygen species metabolic process	2.48E-02
128	GO:0051302: regulation of cell division	2.66E-02
129	GO:0008299: isoprenoid biosynthetic process	2.66E-02
130	GO:0043622: cortical microtubule organization	2.66E-02
131	GO:0009585: red, far-red light phototransduction	2.73E-02
132	GO:0006414: translational elongation	2.81E-02
133	GO:0010224: response to UV-B	2.83E-02
134	GO:0019915: lipid storage	2.84E-02
135	GO:0061077: chaperone-mediated protein folding	2.84E-02
136	GO:0010431: seed maturation	2.84E-02
137	GO:0010017: red or far-red light signaling pathway	3.03E-02
138	GO:0007005: mitochondrion organization	3.03E-02
139	GO:0048443: stamen development	3.42E-02
140	GO:0010089: xylem development	3.42E-02
141	GO:0009651: response to salt stress	3.56E-02
142	GO:0080022: primary root development	3.83E-02
143	GO:0000413: protein peptidyl-prolyl isomerization	3.83E-02
144	GO:0006606: protein import into nucleus	3.83E-02
145	GO:0016192: vesicle-mediated transport	3.97E-02
146	GO:0009958: positive gravitropism	4.04E-02
147	GO:0061025: membrane fusion	4.25E-02
148	GO:0000398: mRNA splicing, via spliceosome	4.47E-02
149	GO:0008654: phospholipid biosynthetic process	4.47E-02
150	GO:0010193: response to ozone	4.69E-02
151	GO:0006979: response to oxidative stress	4.70E-02
152	GO:0031047: gene silencing by RNA	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0052671: geranylgeraniol kinase activity	0.00E+00
3	GO:0051266: sirohydrochlorin ferrochelatase activity	0.00E+00
4	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
5	GO:0004780: sulfate adenylyltransferase (ADP) activity	0.00E+00
6	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
7	GO:0016852: sirohydrochlorin cobaltochelatase activity	0.00E+00
8	GO:0042030: ATPase inhibitor activity	0.00E+00
9	GO:0052670: geraniol kinase activity	0.00E+00
10	GO:0052668: farnesol kinase activity	0.00E+00
11	GO:0003735: structural constituent of ribosome	4.14E-11
12	GO:0008137: NADH dehydrogenase (ubiquinone) activity	5.33E-06
13	GO:0035064: methylated histone binding	2.23E-05
14	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	3.16E-05
15	GO:0004129: cytochrome-c oxidase activity	9.21E-05
16	GO:0008794: arsenate reductase (glutaredoxin) activity	9.21E-05
17	GO:0010011: auxin binding	1.19E-04
18	GO:0004576: oligosaccharyl transferase activity	1.19E-04
19	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.83E-04
20	GO:0015035: protein disulfide oxidoreductase activity	3.29E-04
21	GO:0004427: inorganic diphosphatase activity	4.49E-04
22	GO:0008121: ubiquinol-cytochrome-c reductase activity	4.49E-04
23	GO:0033549: MAP kinase phosphatase activity	4.56E-04
24	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	4.56E-04
25	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	4.56E-04
26	GO:0019707: protein-cysteine S-acyltransferase activity	4.56E-04
27	GO:0030611: arsenate reductase activity	4.56E-04
28	GO:0047134: protein-disulfide reductase activity	5.39E-04
29	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	6.55E-04
30	GO:0015078: hydrogen ion transmembrane transporter activity	6.84E-04
31	GO:0004791: thioredoxin-disulfide reductase activity	7.18E-04
32	GO:0001055: RNA polymerase II activity	9.64E-04
33	GO:0047617: acyl-CoA hydrolase activity	9.64E-04
34	GO:0008428: ribonuclease inhibitor activity	9.85E-04
35	GO:0000064: L-ornithine transmembrane transporter activity	9.85E-04
36	GO:0004061: arylformamidase activity	9.85E-04
37	GO:0004826: phenylalanine-tRNA ligase activity	9.85E-04
38	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	9.85E-04
39	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	9.85E-04
40	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.01E-03
41	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.29E-03
42	GO:0001054: RNA polymerase I activity	1.29E-03
43	GO:0001056: RNA polymerase III activity	1.48E-03
44	GO:0008430: selenium binding	1.60E-03
45	GO:0005047: signal recognition particle binding	1.60E-03
46	GO:0032403: protein complex binding	1.60E-03
47	GO:0008649: rRNA methyltransferase activity	1.60E-03
48	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.60E-03
49	GO:0004089: carbonate dehydratase activity	1.68E-03
50	GO:0050897: cobalt ion binding	2.30E-03
51	GO:0000254: C-4 methylsterol oxidase activity	2.32E-03
52	GO:0047627: adenylylsulfatase activity	2.32E-03
53	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	2.32E-03
54	GO:0004725: protein tyrosine phosphatase activity	2.37E-03
55	GO:0003746: translation elongation factor activity	2.58E-03
56	GO:0051536: iron-sulfur cluster binding	2.63E-03
57	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	3.12E-03
58	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.12E-03
59	GO:0000993: RNA polymerase II core binding	3.12E-03
60	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	3.12E-03
61	GO:0008948: oxaloacetate decarboxylase activity	4.00E-03
62	GO:0008198: ferrous iron binding	4.00E-03
63	GO:0016651: oxidoreductase activity, acting on NAD(P)H	4.00E-03
64	GO:0005496: steroid binding	4.00E-03
65	GO:0031386: protein tag	4.00E-03
66	GO:0004356: glutamate-ammonia ligase activity	4.00E-03
67	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.35E-03
68	GO:0004605: phosphatidate cytidylyltransferase activity	4.95E-03
69	GO:0031177: phosphopantetheine binding	4.95E-03
70	GO:0051117: ATPase binding	4.95E-03
71	GO:0016462: pyrophosphatase activity	4.95E-03
72	GO:0000035: acyl binding	5.98E-03
73	GO:0042162: telomeric DNA binding	7.07E-03
74	GO:0008143: poly(A) binding	7.07E-03
75	GO:0008320: protein transmembrane transporter activity	7.07E-03
76	GO:0016788: hydrolase activity, acting on ester bonds	7.59E-03
77	GO:0003824: catalytic activity	7.74E-03
78	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	8.23E-03
79	GO:0043022: ribosome binding	8.23E-03
80	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.07E-02
81	GO:0008565: protein transporter activity	1.38E-02
82	GO:0000049: tRNA binding	1.64E-02
83	GO:0008017: microtubule binding	1.75E-02
84	GO:0051539: 4 iron, 4 sulfur cluster binding	1.79E-02
85	GO:0015266: protein channel activity	1.80E-02
86	GO:0043621: protein self-association	2.19E-02
87	GO:0051537: 2 iron, 2 sulfur cluster binding	2.19E-02
88	GO:0005198: structural molecule activity	2.27E-02
89	GO:0043130: ubiquitin binding	2.48E-02
90	GO:0005528: FK506 binding	2.48E-02
91	GO:0003714: transcription corepressor activity	2.48E-02
92	GO:0051087: chaperone binding	2.66E-02
93	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.73E-02
94	GO:0003723: RNA binding	3.07E-02
95	GO:0003727: single-stranded RNA binding	3.42E-02
96	GO:0008080: N-acetyltransferase activity	4.04E-02
97	GO:0004527: exonuclease activity	4.04E-02
98	GO:0046873: metal ion transmembrane transporter activity	4.04E-02
99	GO:0016853: isomerase activity	4.25E-02
100	GO:0000166: nucleotide binding	4.27E-02
101	GO:0004872: receptor activity	4.47E-02
102	GO:0019843: rRNA binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
3	GO:0005747: mitochondrial respiratory chain complex I	8.43E-21
4	GO:0045271: respiratory chain complex I	2.24E-10
5	GO:0005840: ribosome	9.56E-10
6	GO:0022626: cytosolic ribosome	3.15E-09
7	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.46E-07
8	GO:0045273: respiratory chain complex II	3.46E-07
9	GO:0022627: cytosolic small ribosomal subunit	5.82E-07
10	GO:0031966: mitochondrial membrane	8.93E-07
11	GO:0005829: cytosol	2.64E-06
12	GO:0005750: mitochondrial respiratory chain complex III	7.14E-06
13	GO:0005753: mitochondrial proton-transporting ATP synthase complex	9.23E-06
14	GO:0000421: autophagosome membrane	2.23E-05
15	GO:0005739: mitochondrion	4.28E-05
16	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.19E-04
17	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.19E-04
18	GO:0005746: mitochondrial respiratory chain	1.83E-04
19	GO:0008250: oligosaccharyltransferase complex	1.83E-04
20	GO:0030904: retromer complex	2.60E-04
21	GO:0005732: small nucleolar ribonucleoprotein complex	3.66E-04
22	GO:0005730: nucleolus	3.78E-04
23	GO:0031410: cytoplasmic vesicle	3.87E-04
24	GO:0032044: DSIF complex	4.56E-04
25	GO:0022625: cytosolic large ribosomal subunit	7.34E-04
26	GO:0005736: DNA-directed RNA polymerase I complex	8.19E-04
27	GO:0005666: DNA-directed RNA polymerase III complex	9.64E-04
28	GO:0005697: telomerase holoenzyme complex	9.85E-04
29	GO:0005737: cytoplasm	1.44E-03
30	GO:0005665: DNA-directed RNA polymerase II, core complex	1.48E-03
31	GO:0005751: mitochondrial respiratory chain complex IV	1.60E-03
32	GO:0005838: proteasome regulatory particle	1.60E-03
33	GO:0005853: eukaryotic translation elongation factor 1 complex	1.60E-03
34	GO:0016020: membrane	2.24E-03
35	GO:0033180: proton-transporting V-type ATPase, V1 domain	2.32E-03
36	GO:1990726: Lsm1-7-Pat1 complex	2.32E-03
37	GO:0000419: DNA-directed RNA polymerase V complex	2.37E-03
38	GO:0005758: mitochondrial intermembrane space	2.63E-03
39	GO:0070469: respiratory chain	2.91E-03
40	GO:0009517: PSII associated light-harvesting complex II	3.12E-03
41	GO:0000445: THO complex part of transcription export complex	3.12E-03
42	GO:0016471: vacuolar proton-transporting V-type ATPase complex	3.12E-03
43	GO:0005774: vacuolar membrane	3.18E-03
44	GO:0005759: mitochondrial matrix	3.28E-03
45	GO:0009536: plastid	3.57E-03
46	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	4.00E-03
47	GO:0031209: SCAR complex	4.95E-03
48	GO:0005771: multivesicular body	4.95E-03
49	GO:0032588: trans-Golgi network membrane	4.95E-03
50	GO:0009507: chloroplast	4.99E-03
51	GO:0016272: prefoldin complex	5.98E-03
52	GO:0005789: endoplasmic reticulum membrane	5.99E-03
53	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	7.07E-03
54	GO:0000347: THO complex	7.07E-03
55	GO:0005688: U6 snRNP	8.23E-03
56	GO:0046540: U4/U6 x U5 tri-snRNP complex	9.45E-03
57	GO:0005788: endoplasmic reticulum lumen	9.96E-03
58	GO:0005763: mitochondrial small ribosomal subunit	1.07E-02
59	GO:0005773: vacuole	1.08E-02
60	GO:0071011: precatalytic spliceosome	1.21E-02
61	GO:0000418: DNA-directed RNA polymerase IV complex	1.35E-02
62	GO:0008541: proteasome regulatory particle, lid subcomplex	1.49E-02
63	GO:0071013: catalytic step 2 spliceosome	1.49E-02
64	GO:0009508: plastid chromosome	1.80E-02
65	GO:0019013: viral nucleocapsid	1.80E-02
66	GO:0005777: peroxisome	1.81E-02
67	GO:0031902: late endosome membrane	1.86E-02
68	GO:0005783: endoplasmic reticulum	2.28E-02
69	GO:0000502: proteasome complex	2.73E-02
70	GO:0015935: small ribosomal subunit	2.84E-02
71	GO:0016607: nuclear speck	3.33E-02
72	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.42E-02
73	GO:0005874: microtubule	3.58E-02
74	GO:0031969: chloroplast membrane	3.73E-02
75	GO:0009523: photosystem II	4.47E-02
76	GO:0005794: Golgi apparatus	4.82E-02
77	GO:0005623: cell	4.97E-02