co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G08540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0015979: photosynthesis	1.44E-05
9	GO:0048564: photosystem I assembly	9.31E-05
10	GO:0046167: glycerol-3-phosphate biosynthetic process	1.37E-04
11	GO:0043007: maintenance of rDNA	1.37E-04
12	GO:0034337: RNA folding	1.37E-04
13	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.37E-04
14	GO:0006419: alanyl-tRNA aminoacylation	1.37E-04
15	GO:0043953: protein transport by the Tat complex	1.37E-04
16	GO:0000476: maturation of 4.5S rRNA	1.37E-04
17	GO:0000967: rRNA 5'-end processing	1.37E-04
18	GO:0000481: maturation of 5S rRNA	1.37E-04
19	GO:0042371: vitamin K biosynthetic process	1.37E-04
20	GO:0065002: intracellular protein transmembrane transport	1.37E-04
21	GO:0043686: co-translational protein modification	1.37E-04
22	GO:0034470: ncRNA processing	3.16E-04
23	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.16E-04
24	GO:0006650: glycerophospholipid metabolic process	3.16E-04
25	GO:0006432: phenylalanyl-tRNA aminoacylation	3.16E-04
26	GO:0018026: peptidyl-lysine monomethylation	3.16E-04
27	GO:0005977: glycogen metabolic process	5.20E-04
28	GO:0046168: glycerol-3-phosphate catabolic process	5.20E-04
29	GO:0009405: pathogenesis	5.20E-04
30	GO:0006954: inflammatory response	5.20E-04
31	GO:0006020: inositol metabolic process	7.44E-04
32	GO:0007231: osmosensory signaling pathway	7.44E-04
33	GO:0006072: glycerol-3-phosphate metabolic process	7.44E-04
34	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	7.44E-04
35	GO:0009052: pentose-phosphate shunt, non-oxidative branch	7.44E-04
36	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	7.44E-04
37	GO:2001141: regulation of RNA biosynthetic process	7.44E-04
38	GO:0009793: embryo development ending in seed dormancy	8.54E-04
39	GO:0015994: chlorophyll metabolic process	9.85E-04
40	GO:0033500: carbohydrate homeostasis	9.85E-04
41	GO:0006021: inositol biosynthetic process	9.85E-04
42	GO:0010021: amylopectin biosynthetic process	9.85E-04
43	GO:0031365: N-terminal protein amino acid modification	1.25E-03
44	GO:0016558: protein import into peroxisome matrix	1.25E-03
45	GO:0010236: plastoquinone biosynthetic process	1.25E-03
46	GO:0042549: photosystem II stabilization	1.53E-03
47	GO:0046855: inositol phosphate dephosphorylation	1.53E-03
48	GO:0042793: transcription from plastid promoter	1.53E-03
49	GO:0010027: thylakoid membrane organization	1.68E-03
50	GO:1901259: chloroplast rRNA processing	1.83E-03
51	GO:0042372: phylloquinone biosynthetic process	1.83E-03
52	GO:0016311: dephosphorylation	2.07E-03
53	GO:0009772: photosynthetic electron transport in photosystem II	2.15E-03
54	GO:0006400: tRNA modification	2.15E-03
55	GO:0000105: histidine biosynthetic process	2.49E-03
56	GO:0009231: riboflavin biosynthetic process	2.49E-03
57	GO:0016559: peroxisome fission	2.49E-03
58	GO:0006875: cellular metal ion homeostasis	2.49E-03
59	GO:0030091: protein repair	2.49E-03
60	GO:0032508: DNA duplex unwinding	2.49E-03
61	GO:0017004: cytochrome complex assembly	2.85E-03
62	GO:0071482: cellular response to light stimulus	2.85E-03
63	GO:0009657: plastid organization	2.85E-03
64	GO:0032544: plastid translation	2.85E-03
65	GO:0010205: photoinhibition	3.60E-03
66	GO:0006816: calcium ion transport	4.42E-03
67	GO:0006415: translational termination	4.42E-03
68	GO:0019684: photosynthesis, light reaction	4.42E-03
69	GO:0009089: lysine biosynthetic process via diaminopimelate	4.42E-03
70	GO:1903507: negative regulation of nucleic acid-templated transcription	4.42E-03
71	GO:0006352: DNA-templated transcription, initiation	4.42E-03
72	GO:0018119: peptidyl-cysteine S-nitrosylation	4.42E-03
73	GO:0006790: sulfur compound metabolic process	4.85E-03
74	GO:0005983: starch catabolic process	4.85E-03
75	GO:0045037: protein import into chloroplast stroma	4.85E-03
76	GO:0010020: chloroplast fission	5.76E-03
77	GO:0010207: photosystem II assembly	5.76E-03
78	GO:0046854: phosphatidylinositol phosphorylation	6.23E-03
79	GO:0019853: L-ascorbic acid biosynthetic process	6.23E-03
80	GO:0010030: positive regulation of seed germination	6.23E-03
81	GO:0070588: calcium ion transmembrane transport	6.23E-03
82	GO:0000162: tryptophan biosynthetic process	6.71E-03
83	GO:0048511: rhythmic process	8.26E-03
84	GO:0048278: vesicle docking	8.26E-03
85	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.79E-03
86	GO:0006012: galactose metabolic process	9.35E-03
87	GO:0071369: cellular response to ethylene stimulus	9.35E-03
88	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.05E-02
89	GO:0042631: cellular response to water deprivation	1.11E-02
90	GO:0000413: protein peptidyl-prolyl isomerization	1.11E-02
91	GO:0048868: pollen tube development	1.17E-02
92	GO:0009451: RNA modification	1.20E-02
93	GO:0061025: membrane fusion	1.23E-02
94	GO:0042752: regulation of circadian rhythm	1.23E-02
95	GO:0019252: starch biosynthetic process	1.29E-02
96	GO:0008654: phospholipid biosynthetic process	1.29E-02
97	GO:0002229: defense response to oomycetes	1.36E-02
98	GO:0010193: response to ozone	1.36E-02
99	GO:0006635: fatty acid beta-oxidation	1.36E-02
100	GO:0010583: response to cyclopentenone	1.42E-02
101	GO:0006412: translation	1.44E-02
102	GO:0009567: double fertilization forming a zygote and endosperm	1.55E-02
103	GO:0009658: chloroplast organization	1.82E-02
104	GO:0042254: ribosome biogenesis	1.85E-02
105	GO:0006906: vesicle fusion	1.90E-02
106	GO:0006457: protein folding	1.94E-02
107	GO:0018298: protein-chromophore linkage	2.12E-02
108	GO:0009813: flavonoid biosynthetic process	2.20E-02
109	GO:0006499: N-terminal protein myristoylation	2.28E-02
110	GO:0007568: aging	2.36E-02
111	GO:0009637: response to blue light	2.51E-02
112	GO:0009867: jasmonic acid mediated signaling pathway	2.51E-02
113	GO:0006887: exocytosis	2.84E-02
114	GO:0006631: fatty acid metabolic process	2.84E-02
115	GO:0010114: response to red light	3.01E-02
116	GO:0051707: response to other organism	3.01E-02
117	GO:0032259: methylation	3.18E-02
118	GO:0006281: DNA repair	3.32E-02
119	GO:0031347: regulation of defense response	3.45E-02
120	GO:0006364: rRNA processing	3.72E-02
121	GO:0010224: response to UV-B	3.82E-02
122	GO:0006096: glycolytic process	4.19E-02
123	GO:0009553: embryo sac development	4.68E-02
124	GO:0006396: RNA processing	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0042623: ATPase activity, coupled	0.00E+00
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.05E-05
9	GO:0050308: sugar-phosphatase activity	1.37E-04
10	GO:0004813: alanine-tRNA ligase activity	1.37E-04
11	GO:0042586: peptide deformylase activity	1.37E-04
12	GO:0019203: carbohydrate phosphatase activity	1.37E-04
13	GO:0015088: copper uptake transmembrane transporter activity	1.37E-04
14	GO:0019843: rRNA binding	1.53E-04
15	GO:0000049: tRNA binding	2.75E-04
16	GO:0047746: chlorophyllase activity	3.16E-04
17	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.16E-04
18	GO:0052832: inositol monophosphate 3-phosphatase activity	3.16E-04
19	GO:0008934: inositol monophosphate 1-phosphatase activity	3.16E-04
20	GO:0052833: inositol monophosphate 4-phosphatase activity	3.16E-04
21	GO:0004826: phenylalanine-tRNA ligase activity	3.16E-04
22	GO:0019156: isoamylase activity	3.16E-04
23	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.16E-04
24	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	5.20E-04
25	GO:0003913: DNA photolyase activity	5.20E-04
26	GO:0005504: fatty acid binding	5.20E-04
27	GO:0090729: toxin activity	5.20E-04
28	GO:0004751: ribose-5-phosphate isomerase activity	5.20E-04
29	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	7.44E-04
30	GO:0016149: translation release factor activity, codon specific	7.44E-04
31	GO:0004659: prenyltransferase activity	9.85E-04
32	GO:0016279: protein-lysine N-methyltransferase activity	9.85E-04
33	GO:0001053: plastid sigma factor activity	9.85E-04
34	GO:0004045: aminoacyl-tRNA hydrolase activity	9.85E-04
35	GO:0016987: sigma factor activity	9.85E-04
36	GO:0045430: chalcone isomerase activity	9.85E-04
37	GO:2001070: starch binding	1.53E-03
38	GO:0042578: phosphoric ester hydrolase activity	1.53E-03
39	GO:0004556: alpha-amylase activity	1.53E-03
40	GO:0008195: phosphatidate phosphatase activity	1.83E-03
41	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.83E-03
42	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.83E-03
43	GO:0009881: photoreceptor activity	2.15E-03
44	GO:0004033: aldo-keto reductase (NADP) activity	2.49E-03
45	GO:0043022: ribosome binding	2.49E-03
46	GO:0003993: acid phosphatase activity	2.87E-03
47	GO:0003747: translation release factor activity	3.22E-03
48	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.22E-03
49	GO:0005381: iron ion transmembrane transporter activity	3.60E-03
50	GO:0005262: calcium channel activity	5.30E-03
51	GO:0005528: FK506 binding	7.22E-03
52	GO:0003714: transcription corepressor activity	7.22E-03
53	GO:0043424: protein histidine kinase binding	7.73E-03
54	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.26E-03
55	GO:0008017: microtubule binding	1.22E-02
56	GO:0003729: mRNA binding	1.65E-02
57	GO:0016597: amino acid binding	1.69E-02
58	GO:0008168: methyltransferase activity	1.75E-02
59	GO:0030145: manganese ion binding	2.36E-02
60	GO:0003746: translation elongation factor activity	2.51E-02
61	GO:0000149: SNARE binding	2.68E-02
62	GO:0042803: protein homodimerization activity	2.83E-02
63	GO:0005484: SNAP receptor activity	3.01E-02
64	GO:0003723: RNA binding	3.08E-02
65	GO:0051287: NAD binding	3.45E-02
66	GO:0004519: endonuclease activity	3.61E-02
67	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.72E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009349: riboflavin synthase complex	0.00E+00
4	GO:0009507: chloroplast	5.47E-42
5	GO:0009570: chloroplast stroma	6.95E-17
6	GO:0009535: chloroplast thylakoid membrane	4.84E-12
7	GO:0009543: chloroplast thylakoid lumen	6.04E-10
8	GO:0009579: thylakoid	9.24E-10
9	GO:0031977: thylakoid lumen	2.57E-08
10	GO:0030095: chloroplast photosystem II	1.54E-07
11	GO:0009534: chloroplast thylakoid	2.27E-07
12	GO:0009941: chloroplast envelope	5.98E-07
13	GO:0009538: photosystem I reaction center	1.14E-06
14	GO:0009533: chloroplast stromal thylakoid	7.18E-05
15	GO:0031361: integral component of thylakoid membrane	1.37E-04
16	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.16E-04
17	GO:0033281: TAT protein transport complex	5.20E-04
18	GO:0009654: photosystem II oxygen evolving complex	5.43E-04
19	GO:0005840: ribosome	6.21E-04
20	GO:0042646: plastid nucleoid	7.44E-04
21	GO:0009331: glycerol-3-phosphate dehydrogenase complex	7.44E-04
22	GO:0031897: Tic complex	9.85E-04
23	GO:0019898: extrinsic component of membrane	1.10E-03
24	GO:0042644: chloroplast nucleoid	3.22E-03
25	GO:0055028: cortical microtubule	4.00E-03
26	GO:0032040: small-subunit processome	4.85E-03
27	GO:0009508: plastid chromosome	5.30E-03
28	GO:0010287: plastoglobule	8.02E-03
29	GO:0005759: mitochondrial matrix	1.06E-02
30	GO:0009523: photosystem II	1.29E-02
31	GO:0009504: cell plate	1.29E-02
32	GO:0009295: nucleoid	1.62E-02
33	GO:0005778: peroxisomal membrane	1.62E-02
34	GO:0030529: intracellular ribonucleoprotein complex	1.76E-02
35	GO:0009707: chloroplast outer membrane	2.12E-02
36	GO:0015934: large ribosomal subunit	2.36E-02
37	GO:0031201: SNARE complex	2.84E-02
38	GO:0010008: endosome membrane	4.29E-02
39	GO:0009536: plastid	4.36E-02
40	GO:0005887: integral component of plasma membrane	4.50E-02
41	GO:0012505: endomembrane system	4.68E-02
42	GO:0009706: chloroplast inner membrane	4.78E-02