co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G08330

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
7	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
8	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
9	GO:0007638: mechanosensory behavior	0.00E+00
10	GO:0080127: fruit septum development	0.00E+00
11	GO:0006114: glycerol biosynthetic process	0.00E+00
12	GO:0015979: photosynthesis	5.36E-08
13	GO:0010583: response to cyclopentenone	1.10E-04
14	GO:0010158: abaxial cell fate specification	1.90E-04
15	GO:0010190: cytochrome b6f complex assembly	2.70E-04
16	GO:1901259: chloroplast rRNA processing	3.62E-04
17	GO:0000481: maturation of 5S rRNA	4.67E-04
18	GO:1904964: positive regulation of phytol biosynthetic process	4.67E-04
19	GO:0065002: intracellular protein transmembrane transport	4.67E-04
20	GO:0043686: co-translational protein modification	4.67E-04
21	GO:0043007: maintenance of rDNA	4.67E-04
22	GO:0034337: RNA folding	4.67E-04
23	GO:0010450: inflorescence meristem growth	4.67E-04
24	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	4.67E-04
25	GO:0000476: maturation of 4.5S rRNA	4.67E-04
26	GO:0010362: negative regulation of anion channel activity by blue light	4.67E-04
27	GO:0000967: rRNA 5'-end processing	4.67E-04
28	GO:0010493: Lewis a epitope biosynthetic process	4.67E-04
29	GO:0043953: protein transport by the Tat complex	4.67E-04
30	GO:1904966: positive regulation of vitamin E biosynthetic process	4.67E-04
31	GO:0048564: photosystem I assembly	5.81E-04
32	GO:0048507: meristem development	8.48E-04
33	GO:0001736: establishment of planar polarity	1.01E-03
34	GO:0010155: regulation of proton transport	1.01E-03
35	GO:0080181: lateral root branching	1.01E-03
36	GO:0034470: ncRNA processing	1.01E-03
37	GO:0006741: NADP biosynthetic process	1.01E-03
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.01E-03
39	GO:0006432: phenylalanyl-tRNA aminoacylation	1.01E-03
40	GO:0018026: peptidyl-lysine monomethylation	1.01E-03
41	GO:0006949: syncytium formation	1.16E-03
42	GO:0010027: thylakoid membrane organization	1.42E-03
43	GO:0010582: floral meristem determinacy	1.53E-03
44	GO:0001578: microtubule bundle formation	1.64E-03
45	GO:0005977: glycogen metabolic process	1.64E-03
46	GO:0045165: cell fate commitment	1.64E-03
47	GO:0019674: NAD metabolic process	1.64E-03
48	GO:2000082: regulation of L-ascorbic acid biosynthetic process	1.64E-03
49	GO:0006954: inflammatory response	1.64E-03
50	GO:2000012: regulation of auxin polar transport	1.74E-03
51	GO:0010628: positive regulation of gene expression	1.74E-03
52	GO:0016311: dephosphorylation	1.87E-03
53	GO:0018298: protein-chromophore linkage	2.00E-03
54	GO:2001141: regulation of RNA biosynthetic process	2.38E-03
55	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.38E-03
56	GO:0019363: pyridine nucleotide biosynthetic process	2.38E-03
57	GO:0007231: osmosensory signaling pathway	2.38E-03
58	GO:0010239: chloroplast mRNA processing	2.38E-03
59	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.38E-03
60	GO:0009650: UV protection	2.38E-03
61	GO:0050482: arachidonic acid secretion	2.38E-03
62	GO:0009637: response to blue light	2.70E-03
63	GO:0005992: trehalose biosynthetic process	2.73E-03
64	GO:0010021: amylopectin biosynthetic process	3.20E-03
65	GO:0051322: anaphase	3.20E-03
66	GO:0009765: photosynthesis, light harvesting	3.20E-03
67	GO:0015846: polyamine transport	3.20E-03
68	GO:0033500: carbohydrate homeostasis	3.20E-03
69	GO:0022622: root system development	3.20E-03
70	GO:0006552: leucine catabolic process	3.20E-03
71	GO:0007219: Notch signaling pathway	3.20E-03
72	GO:0007020: microtubule nucleation	3.20E-03
73	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.96E-03
74	GO:0031365: N-terminal protein amino acid modification	4.10E-03
75	GO:1902183: regulation of shoot apical meristem development	4.10E-03
76	GO:0006465: signal peptide processing	4.10E-03
77	GO:0046785: microtubule polymerization	4.10E-03
78	GO:0016558: protein import into peroxisome matrix	4.10E-03
79	GO:0006564: L-serine biosynthetic process	4.10E-03
80	GO:0009904: chloroplast accumulation movement	4.10E-03
81	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.67E-03
82	GO:0009664: plant-type cell wall organization	5.00E-03
83	GO:0042549: photosystem II stabilization	5.08E-03
84	GO:1902456: regulation of stomatal opening	5.08E-03
85	GO:0042793: transcription from plastid promoter	5.08E-03
86	GO:0003006: developmental process involved in reproduction	5.08E-03
87	GO:0009958: positive gravitropism	5.44E-03
88	GO:0009903: chloroplast avoidance movement	6.13E-03
89	GO:0010189: vitamin E biosynthetic process	6.13E-03
90	GO:0009942: longitudinal axis specification	6.13E-03
91	GO:0005975: carbohydrate metabolic process	6.42E-03
92	GO:0032502: developmental process	7.19E-03
93	GO:0032880: regulation of protein localization	7.25E-03
94	GO:0048528: post-embryonic root development	7.25E-03
95	GO:0010050: vegetative phase change	7.25E-03
96	GO:0022904: respiratory electron transport chain	7.25E-03
97	GO:0009658: chloroplast organization	7.79E-03
98	GO:0009828: plant-type cell wall loosening	8.17E-03
99	GO:0009567: double fertilization forming a zygote and endosperm	8.17E-03
100	GO:0010492: maintenance of shoot apical meristem identity	8.44E-03
101	GO:0000105: histidine biosynthetic process	8.44E-03
102	GO:0009231: riboflavin biosynthetic process	8.44E-03
103	GO:0016559: peroxisome fission	8.44E-03
104	GO:0006644: phospholipid metabolic process	8.44E-03
105	GO:0030091: protein repair	8.44E-03
106	GO:0009850: auxin metabolic process	8.44E-03
107	GO:0006605: protein targeting	8.44E-03
108	GO:0032508: DNA duplex unwinding	8.44E-03
109	GO:0070413: trehalose metabolism in response to stress	8.44E-03
110	GO:0007389: pattern specification process	9.69E-03
111	GO:0017004: cytochrome complex assembly	9.69E-03
112	GO:0010093: specification of floral organ identity	9.69E-03
113	GO:0071482: cellular response to light stimulus	9.69E-03
114	GO:0009827: plant-type cell wall modification	9.69E-03
115	GO:0009734: auxin-activated signaling pathway	1.02E-02
116	GO:0080167: response to karrikin	1.08E-02
117	GO:0009627: systemic acquired resistance	1.09E-02
118	GO:0048589: developmental growth	1.10E-02
119	GO:0010206: photosystem II repair	1.10E-02
120	GO:0006098: pentose-phosphate shunt	1.10E-02
121	GO:2000024: regulation of leaf development	1.10E-02
122	GO:0015995: chlorophyll biosynthetic process	1.15E-02
123	GO:0010205: photoinhibition	1.24E-02
124	GO:0009638: phototropism	1.24E-02
125	GO:0048829: root cap development	1.38E-02
126	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.38E-02
127	GO:0009750: response to fructose	1.53E-02
128	GO:0018119: peptidyl-cysteine S-nitrosylation	1.53E-02
129	GO:0016485: protein processing	1.53E-02
130	GO:0048765: root hair cell differentiation	1.53E-02
131	GO:0010015: root morphogenesis	1.53E-02
132	GO:0019684: photosynthesis, light reaction	1.53E-02
133	GO:0006816: calcium ion transport	1.53E-02
134	GO:0009089: lysine biosynthetic process via diaminopimelate	1.53E-02
135	GO:0009773: photosynthetic electron transport in photosystem I	1.53E-02
136	GO:0043085: positive regulation of catalytic activity	1.53E-02
137	GO:1903507: negative regulation of nucleic acid-templated transcription	1.53E-02
138	GO:0006352: DNA-templated transcription, initiation	1.53E-02
139	GO:0010152: pollen maturation	1.69E-02
140	GO:0005983: starch catabolic process	1.69E-02
141	GO:0009451: RNA modification	1.78E-02
142	GO:0018107: peptidyl-threonine phosphorylation	1.85E-02
143	GO:0006094: gluconeogenesis	1.85E-02
144	GO:0009785: blue light signaling pathway	1.85E-02
145	GO:0048467: gynoecium development	2.01E-02
146	GO:0010207: photosystem II assembly	2.01E-02
147	GO:0010020: chloroplast fission	2.01E-02
148	GO:0009933: meristem structural organization	2.01E-02
149	GO:0007166: cell surface receptor signaling pathway	2.05E-02
150	GO:0010114: response to red light	2.10E-02
151	GO:0009926: auxin polar transport	2.10E-02
152	GO:0010030: positive regulation of seed germination	2.19E-02
153	GO:0070588: calcium ion transmembrane transport	2.19E-02
154	GO:0019853: L-ascorbic acid biosynthetic process	2.19E-02
155	GO:0006863: purine nucleobase transport	2.36E-02
156	GO:0006833: water transport	2.36E-02
157	GO:0000162: tryptophan biosynthetic process	2.36E-02
158	GO:0009944: polarity specification of adaxial/abaxial axis	2.54E-02
159	GO:0006289: nucleotide-excision repair	2.54E-02
160	GO:0043622: cortical microtubule organization	2.73E-02
161	GO:0009768: photosynthesis, light harvesting in photosystem I	2.73E-02
162	GO:0009826: unidimensional cell growth	2.85E-02
163	GO:0048278: vesicle docking	2.92E-02
164	GO:0003333: amino acid transmembrane transport	2.92E-02
165	GO:0031348: negative regulation of defense response	3.11E-02
166	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.11E-02
167	GO:0071369: cellular response to ethylene stimulus	3.31E-02
168	GO:0006012: galactose metabolic process	3.31E-02
169	GO:0009411: response to UV	3.31E-02
170	GO:0006096: glycolytic process	3.35E-02
171	GO:0048443: stamen development	3.51E-02
172	GO:0006284: base-excision repair	3.51E-02
173	GO:0009306: protein secretion	3.51E-02
174	GO:0008284: positive regulation of cell proliferation	3.72E-02
175	GO:0009740: gibberellic acid mediated signaling pathway	3.79E-02
176	GO:0009793: embryo development ending in seed dormancy	3.93E-02
177	GO:0034220: ion transmembrane transport	3.93E-02
178	GO:0042631: cellular response to water deprivation	3.93E-02
179	GO:0048868: pollen tube development	4.15E-02
180	GO:0046323: glucose import	4.15E-02
181	GO:0009741: response to brassinosteroid	4.15E-02
182	GO:0006520: cellular amino acid metabolic process	4.15E-02
183	GO:0010154: fruit development	4.15E-02
184	GO:0007018: microtubule-based movement	4.37E-02
185	GO:0061025: membrane fusion	4.37E-02
186	GO:0009646: response to absence of light	4.37E-02
187	GO:0019252: starch biosynthetic process	4.59E-02
188	GO:0008654: phospholipid biosynthetic process	4.59E-02
189	GO:0009749: response to glucose	4.59E-02
190	GO:0006635: fatty acid beta-oxidation	4.81E-02
191	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.81E-02
192	GO:0071554: cell wall organization or biogenesis	4.81E-02
193	GO:0002229: defense response to oomycetes	4.81E-02
194	GO:0010193: response to ozone	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
3	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
4	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
5	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
6	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
7	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
8	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
9	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
10	GO:0019808: polyamine binding	0.00E+00
11	GO:0010276: phytol kinase activity	0.00E+00
12	GO:0048039: ubiquinone binding	0.00E+00
13	GO:0042623: ATPase activity, coupled	0.00E+00
14	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
15	GO:0010011: auxin binding	1.24E-04
16	GO:0004045: aminoacyl-tRNA hydrolase activity	1.24E-04
17	GO:0004462: lactoylglutathione lyase activity	2.70E-04
18	GO:0042736: NADH kinase activity	4.67E-04
19	GO:0046920: alpha-(1->3)-fucosyltransferase activity	4.67E-04
20	GO:0050308: sugar-phosphatase activity	4.67E-04
21	GO:0019203: carbohydrate phosphatase activity	4.67E-04
22	GO:0042586: peptide deformylase activity	4.67E-04
23	GO:0016868: intramolecular transferase activity, phosphotransferases	1.01E-03
24	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.01E-03
25	GO:0004617: phosphoglycerate dehydrogenase activity	1.01E-03
26	GO:0019172: glyoxalase III activity	1.01E-03
27	GO:0019156: isoamylase activity	1.01E-03
28	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.01E-03
29	GO:0004826: phenylalanine-tRNA ligase activity	1.01E-03
30	GO:0004805: trehalose-phosphatase activity	1.16E-03
31	GO:0005504: fatty acid binding	1.64E-03
32	GO:0004751: ribose-5-phosphate isomerase activity	1.64E-03
33	GO:0009882: blue light photoreceptor activity	2.38E-03
34	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.38E-03
35	GO:0005354: galactose transmembrane transporter activity	2.38E-03
36	GO:0016851: magnesium chelatase activity	2.38E-03
37	GO:0003993: acid phosphatase activity	2.86E-03
38	GO:0016279: protein-lysine N-methyltransferase activity	3.20E-03
39	GO:0001053: plastid sigma factor activity	3.20E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.20E-03
41	GO:0080032: methyl jasmonate esterase activity	3.20E-03
42	GO:0016987: sigma factor activity	3.20E-03
43	GO:0070628: proteasome binding	3.20E-03
44	GO:0045430: chalcone isomerase activity	3.20E-03
45	GO:0010328: auxin influx transmembrane transporter activity	3.20E-03
46	GO:0043495: protein anchor	3.20E-03
47	GO:0008725: DNA-3-methyladenine glycosylase activity	4.10E-03
48	GO:0004623: phospholipase A2 activity	4.10E-03
49	GO:0008017: microtubule binding	4.29E-03
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.55E-03
51	GO:2001070: starch binding	5.08E-03
52	GO:0004605: phosphatidate cytidylyltransferase activity	5.08E-03
53	GO:0080030: methyl indole-3-acetate esterase activity	5.08E-03
54	GO:0004332: fructose-bisphosphate aldolase activity	5.08E-03
55	GO:0031593: polyubiquitin binding	5.08E-03
56	GO:0004556: alpha-amylase activity	5.08E-03
57	GO:0042578: phosphoric ester hydrolase activity	5.08E-03
58	GO:0008195: phosphatidate phosphatase activity	6.13E-03
59	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	6.13E-03
60	GO:0019899: enzyme binding	7.25E-03
61	GO:0004033: aldo-keto reductase (NADP) activity	8.44E-03
62	GO:0003951: NAD+ kinase activity	9.69E-03
63	GO:0016168: chlorophyll binding	1.03E-02
64	GO:0008417: fucosyltransferase activity	1.10E-02
65	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.10E-02
66	GO:0019843: rRNA binding	1.15E-02
67	GO:0009672: auxin:proton symporter activity	1.24E-02
68	GO:0015020: glucuronosyltransferase activity	1.38E-02
69	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.58E-02
70	GO:0004521: endoribonuclease activity	1.69E-02
71	GO:0000049: tRNA binding	1.69E-02
72	GO:0000155: phosphorelay sensor kinase activity	1.85E-02
73	GO:0005262: calcium channel activity	1.85E-02
74	GO:0004565: beta-galactosidase activity	1.85E-02
75	GO:0008081: phosphoric diester hydrolase activity	1.85E-02
76	GO:0010329: auxin efflux transmembrane transporter activity	1.85E-02
77	GO:0008083: growth factor activity	2.01E-02
78	GO:0004175: endopeptidase activity	2.01E-02
79	GO:0004190: aspartic-type endopeptidase activity	2.19E-02
80	GO:0042802: identical protein binding	2.34E-02
81	GO:0031409: pigment binding	2.36E-02
82	GO:0043130: ubiquitin binding	2.54E-02
83	GO:0005528: FK506 binding	2.54E-02
84	GO:0003714: transcription corepressor activity	2.54E-02
85	GO:0005345: purine nucleobase transmembrane transporter activity	2.73E-02
86	GO:0016788: hydrolase activity, acting on ester bonds	3.06E-02
87	GO:0016779: nucleotidyltransferase activity	3.11E-02
88	GO:0031625: ubiquitin protein ligase binding	3.13E-02
89	GO:0022891: substrate-specific transmembrane transporter activity	3.31E-02
90	GO:0030570: pectate lyase activity	3.31E-02
91	GO:0003727: single-stranded RNA binding	3.51E-02
92	GO:0008233: peptidase activity	3.82E-02
93	GO:0008536: Ran GTPase binding	4.15E-02
94	GO:0005355: glucose transmembrane transporter activity	4.37E-02
95	GO:0010181: FMN binding	4.37E-02
96	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.81E-02
97	GO:0048038: quinone binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0010368: chloroplast isoamylase complex	0.00E+00
6	GO:0042597: periplasmic space	0.00E+00
7	GO:0009507: chloroplast	1.52E-25
8	GO:0009535: chloroplast thylakoid membrane	4.60E-16
9	GO:0009570: chloroplast stroma	2.67E-09
10	GO:0009543: chloroplast thylakoid lumen	2.77E-09
11	GO:0030095: chloroplast photosystem II	1.82E-07
12	GO:0031977: thylakoid lumen	5.98E-06
13	GO:0009534: chloroplast thylakoid	7.85E-06
14	GO:0009538: photosystem I reaction center	2.37E-05
15	GO:0009579: thylakoid	4.23E-05
16	GO:0009654: photosystem II oxygen evolving complex	3.16E-04
17	GO:0010287: plastoglobule	4.57E-04
18	GO:0009986: cell surface	4.66E-04
19	GO:0031361: integral component of thylakoid membrane	4.67E-04
20	GO:0005787: signal peptidase complex	4.67E-04
21	GO:0070765: gamma-secretase complex	4.67E-04
22	GO:0009523: photosystem II	8.22E-04
23	GO:0019898: extrinsic component of membrane	8.22E-04
24	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.01E-03
25	GO:0055028: cortical microtubule	1.16E-03
26	GO:0009941: chloroplast envelope	1.63E-03
27	GO:0033281: TAT protein transport complex	1.64E-03
28	GO:0010007: magnesium chelatase complex	1.64E-03
29	GO:0009508: plastid chromosome	1.74E-03
30	GO:0009531: secondary cell wall	2.38E-03
31	GO:0042646: plastid nucleoid	2.38E-03
32	GO:0009898: cytoplasmic side of plasma membrane	3.20E-03
33	GO:0030660: Golgi-associated vesicle membrane	3.20E-03
34	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	3.20E-03
35	GO:0072686: mitotic spindle	4.10E-03
36	GO:0010005: cortical microtubule, transverse to long axis	6.13E-03
37	GO:0009533: chloroplast stromal thylakoid	7.25E-03
38	GO:0031305: integral component of mitochondrial inner membrane	8.44E-03
39	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	8.44E-03
40	GO:0009295: nucleoid	8.68E-03
41	GO:0030529: intracellular ribonucleoprotein complex	9.76E-03
42	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.10E-02
43	GO:0042644: chloroplast nucleoid	1.10E-02
44	GO:0005740: mitochondrial envelope	1.38E-02
45	GO:0090404: pollen tube tip	1.53E-02
46	GO:0005765: lysosomal membrane	1.53E-02
47	GO:0032040: small-subunit processome	1.69E-02
48	GO:0009574: preprophase band	1.85E-02
49	GO:0005938: cell cortex	1.85E-02
50	GO:0030076: light-harvesting complex	2.19E-02
51	GO:0042651: thylakoid membrane	2.73E-02
52	GO:0009505: plant-type cell wall	2.89E-02
53	GO:0005887: integral component of plasma membrane	3.05E-02
54	GO:0031410: cytoplasmic vesicle	3.11E-02
55	GO:0005871: kinesin complex	3.72E-02
56	GO:0005874: microtubule	3.74E-02
57	GO:0031969: chloroplast membrane	3.90E-02
58	GO:0009522: photosystem I	4.37E-02
59	GO:0009504: cell plate	4.59E-02