Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G06980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016118: carotenoid catabolic process0.00E+00
2GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
3GO:0009768: photosynthesis, light harvesting in photosystem I7.30E-13
4GO:0009769: photosynthesis, light harvesting in photosystem II2.40E-12
5GO:0015979: photosynthesis7.85E-12
6GO:0018298: protein-chromophore linkage4.93E-11
7GO:0009644: response to high light intensity2.48E-10
8GO:0009645: response to low light intensity stimulus2.39E-09
9GO:0009269: response to desiccation1.14E-07
10GO:0009416: response to light stimulus4.50E-07
11GO:0010218: response to far red light1.60E-06
12GO:0010114: response to red light3.21E-06
13GO:0016124: xanthophyll catabolic process3.21E-05
14GO:0016121: carotene catabolic process3.21E-05
15GO:1902448: positive regulation of shade avoidance5.78E-05
16GO:0010600: regulation of auxin biosynthetic process1.22E-04
17GO:0030104: water homeostasis1.22E-04
18GO:0006021: inositol biosynthetic process1.22E-04
19GO:0009765: photosynthesis, light harvesting1.22E-04
20GO:0009637: response to blue light1.25E-04
21GO:0009635: response to herbicide1.98E-04
22GO:0010264: myo-inositol hexakisphosphate biosynthetic process1.98E-04
23GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.39E-04
24GO:0010196: nonphotochemical quenching2.82E-04
25GO:0010928: regulation of auxin mediated signaling pathway3.27E-04
26GO:0010206: photosystem II repair4.21E-04
27GO:0090333: regulation of stomatal closure4.21E-04
28GO:0009773: photosynthetic electron transport in photosystem I5.71E-04
29GO:0010207: photosystem II assembly7.31E-04
30GO:0090351: seedling development7.88E-04
31GO:0009409: response to cold9.38E-04
32GO:0048511: rhythmic process1.02E-03
33GO:0009693: ethylene biosynthetic process1.14E-03
34GO:0071215: cellular response to abscisic acid stimulus1.14E-03
35GO:0006814: sodium ion transport1.47E-03
36GO:0008654: phospholipid biosynthetic process1.54E-03
37GO:0071554: cell wall organization or biogenesis1.61E-03
38GO:0051607: defense response to virus1.98E-03
39GO:0015995: chlorophyll biosynthetic process2.30E-03
40GO:0048573: photoperiodism, flowering2.30E-03
41GO:0010119: regulation of stomatal movement2.71E-03
42GO:0042542: response to hydrogen peroxide3.33E-03
43GO:0009640: photomorphogenesis3.43E-03
44GO:0009585: red, far-red light phototransduction4.20E-03
45GO:0009624: response to nematode5.34E-03
46GO:0016036: cellular response to phosphate starvation7.42E-03
47GO:0007623: circadian rhythm7.79E-03
48GO:0010228: vegetative to reproductive phase transition of meristem8.05E-03
49GO:0009793: embryo development ending in seed dormancy1.21E-02
50GO:0080167: response to karrikin1.23E-02
51GO:0009408: response to heat1.62E-02
52GO:0006355: regulation of transcription, DNA-templated1.92E-02
53GO:0009908: flower development2.27E-02
54GO:0055085: transmembrane transport2.89E-02
55GO:0006351: transcription, DNA-templated3.19E-02
56GO:0009414: response to water deprivation3.97E-02
57GO:0042742: defense response to bacterium4.04E-02
58GO:0009733: response to auxin4.39E-02
59GO:0055114: oxidation-reduction process4.72E-02
RankGO TermAdjusted P value
1GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
2GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
3GO:0031409: pigment binding3.94E-13
4GO:0016168: chlorophyll binding2.70E-11
5GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity1.21E-05
6GO:0004512: inositol-3-phosphate synthase activity3.21E-05
7GO:0016851: magnesium chelatase activity8.79E-05
8GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity1.59E-04
9GO:0046872: metal ion binding2.53E-04
10GO:0071949: FAD binding4.21E-04
11GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity4.69E-04
12GO:0005315: inorganic phosphate transmembrane transporter activity6.76E-04
13GO:0031072: heat shock protein binding6.76E-04
14GO:0003712: transcription cofactor activity7.88E-04
15GO:0003756: protein disulfide isomerase activity1.21E-03
16GO:0008514: organic anion transmembrane transporter activity1.21E-03
17GO:0016413: O-acetyltransferase activity1.98E-03
18GO:0005515: protein binding3.07E-03
19GO:0005198: structural molecule activity3.71E-03
20GO:0015293: symporter activity3.71E-03
21GO:0016874: ligase activity5.13E-03
22GO:0051082: unfolded protein binding5.34E-03
23GO:0015144: carbohydrate transmembrane transporter activity7.06E-03
24GO:0005351: sugar:proton symporter activity7.67E-03
25GO:0003743: translation initiation factor activity8.69E-03
26GO:0042802: identical protein binding9.21E-03
27GO:0004497: monooxygenase activity1.23E-02
28GO:0003700: transcription factor activity, sequence-specific DNA binding3.08E-02
29GO:0016491: oxidoreductase activity4.91E-02
30GO:0046983: protein dimerization activity4.96E-02
RankGO TermAdjusted P value
1GO:0009522: photosystem I5.25E-12
2GO:0030076: light-harvesting complex1.43E-10
3GO:0009517: PSII associated light-harvesting complex II1.76E-10
4GO:0009579: thylakoid3.20E-10
5GO:0009535: chloroplast thylakoid membrane1.15E-09
6GO:0009523: photosystem II1.81E-09
7GO:0010287: plastoglobule1.99E-09
8GO:0009534: chloroplast thylakoid1.76E-08
9GO:0009783: photosystem II antenna complex1.21E-05
10GO:0009507: chloroplast2.63E-05
11GO:0010007: magnesium chelatase complex5.78E-05
12GO:0009941: chloroplast envelope1.07E-04
13GO:0042651: thylakoid membrane9.61E-04
14GO:0009706: chloroplast inner membrane5.34E-03
15GO:0016021: integral component of membrane1.13E-02
16GO:0005774: vacuolar membrane1.81E-02
17GO:0009570: chloroplast stroma3.44E-02
18GO:0005622: intracellular3.68E-02
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Gene type



Gene DE type