co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G06960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006983: ER overload response	0.00E+00
2	GO:0001881: receptor recycling	0.00E+00
3	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	9.60E-06
4	GO:0043066: negative regulation of apoptotic process	8.18E-05
5	GO:0035335: peptidyl-tyrosine dephosphorylation	8.18E-05
6	GO:0008333: endosome to lysosome transport	1.42E-04
7	GO:0006536: glutamate metabolic process	2.85E-04
8	GO:0071219: cellular response to molecule of bacterial origin	2.85E-04
9	GO:0080142: regulation of salicylic acid biosynthetic process	2.85E-04
10	GO:0045116: protein neddylation	3.65E-04
11	GO:0009164: nucleoside catabolic process	3.65E-04
12	GO:0097428: protein maturation by iron-sulfur cluster transfer	3.65E-04
13	GO:0009554: megasporogenesis	5.36E-04
14	GO:0006401: RNA catabolic process	6.27E-04
15	GO:0006367: transcription initiation from RNA polymerase II promoter	8.20E-04
16	GO:0090305: nucleic acid phosphodiester bond hydrolysis	9.20E-04
17	GO:0010112: regulation of systemic acquired resistance	9.20E-04
18	GO:1900426: positive regulation of defense response to bacterium	1.02E-03
19	GO:0043069: negative regulation of programmed cell death	1.13E-03
20	GO:0000038: very long-chain fatty acid metabolic process	1.24E-03
21	GO:0072593: reactive oxygen species metabolic process	1.24E-03
22	GO:0006790: sulfur compound metabolic process	1.36E-03
23	GO:0007034: vacuolar transport	1.60E-03
24	GO:0010167: response to nitrate	1.72E-03
25	GO:0046854: phosphatidylinositol phosphorylation	1.72E-03
26	GO:0042147: retrograde transport, endosome to Golgi	2.84E-03
27	GO:0006623: protein targeting to vacuole	3.47E-03
28	GO:0002229: defense response to oomycetes	3.63E-03
29	GO:0046686: response to cadmium ion	5.30E-03
30	GO:0009817: defense response to fungus, incompatible interaction	5.60E-03
31	GO:0006099: tricarboxylic acid cycle	6.80E-03
32	GO:0006839: mitochondrial transport	7.22E-03
33	GO:0010224: response to UV-B	9.93E-03
34	GO:0006096: glycolytic process	1.09E-02
35	GO:0009626: plant-type hypersensitive response	1.14E-02
36	GO:0009742: brassinosteroid mediated signaling pathway	1.29E-02
37	GO:0042744: hydrogen peroxide catabolic process	1.60E-02
38	GO:0006413: translational initiation	1.74E-02
39	GO:0006979: response to oxidative stress	1.79E-02
40	GO:0006470: protein dephosphorylation	2.01E-02
41	GO:0009617: response to bacterium	2.07E-02
42	GO:0016192: vesicle-mediated transport	3.02E-02

Rank	GO Term	Adjusted P value
1	GO:0016881: acid-amino acid ligase activity	0.00E+00
2	GO:0004656: procollagen-proline 4-dioxygenase activity	5.15E-06
3	GO:0045309: protein phosphorylated amino acid binding	1.95E-05
4	GO:0019904: protein domain specific binding	2.85E-05
5	GO:0048037: cofactor binding	3.25E-05
6	GO:0004722: protein serine/threonine phosphatase activity	4.53E-05
7	GO:0031418: L-ascorbic acid binding	6.68E-05
8	GO:0019781: NEDD8 activating enzyme activity	8.18E-05
9	GO:0008805: carbon-monoxide oxygenase activity	8.18E-05
10	GO:0004775: succinate-CoA ligase (ADP-forming) activity	8.18E-05
11	GO:0004776: succinate-CoA ligase (GDP-forming) activity	8.18E-05
12	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	1.42E-04
13	GO:0004351: glutamate decarboxylase activity	2.11E-04
14	GO:0008641: small protein activating enzyme activity	3.65E-04
15	GO:0005496: steroid binding	3.65E-04
16	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.41E-04
17	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.36E-04
18	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	5.36E-04
19	GO:0004743: pyruvate kinase activity	1.02E-03
20	GO:0030955: potassium ion binding	1.02E-03
21	GO:0004725: protein tyrosine phosphatase activity	1.85E-03
22	GO:0008536: Ran GTPase binding	3.15E-03
23	GO:0004518: nuclease activity	3.80E-03
24	GO:0046872: metal ion binding	4.78E-03
25	GO:0003746: translation elongation factor activity	6.60E-03
26	GO:0016787: hydrolase activity	7.93E-03
27	GO:0005198: structural molecule activity	8.53E-03
28	GO:0015035: protein disulfide oxidoreductase activity	1.27E-02
29	GO:0005516: calmodulin binding	1.32E-02
30	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.48E-02
31	GO:0030170: pyridoxal phosphate binding	1.57E-02
32	GO:0005506: iron ion binding	1.75E-02
33	GO:0003743: translation initiation factor activity	2.04E-02
34	GO:0046982: protein heterodimerization activity	2.46E-02
35	GO:0000287: magnesium ion binding	2.46E-02
36	GO:0004601: peroxidase activity	2.50E-02
37	GO:0020037: heme binding	2.81E-02

Rank	GO Term	Adjusted P value
1	GO:0005674: transcription factor TFIIF complex	0.00E+00
2	GO:0005789: endoplasmic reticulum membrane	1.48E-04
3	GO:0005794: Golgi apparatus	2.67E-04
4	GO:0030904: retromer complex	4.48E-04
5	GO:0005771: multivesicular body	4.48E-04
6	GO:0005886: plasma membrane	5.06E-04
7	GO:0031902: late endosome membrane	5.22E-04
8	GO:0005635: nuclear envelope	8.02E-04
9	GO:0005783: endoplasmic reticulum	9.31E-03
10	GO:0000502: proteasome complex	9.69E-03
11	GO:0005739: mitochondrion	1.64E-02
12	GO:0005743: mitochondrial inner membrane	3.65E-02
13	GO:0043231: intracellular membrane-bounded organelle	4.12E-02