Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G06560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
2GO:0070328: triglyceride homeostasis0.00E+00
3GO:0034775: glutathione transmembrane transport0.00E+00
4GO:0071475: cellular hyperosmotic salinity response0.00E+00
5GO:0055091: phospholipid homeostasis0.00E+00
6GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
7GO:0042344: indole glucosinolate catabolic process1.03E-05
8GO:0010200: response to chitin1.17E-05
9GO:0052544: defense response by callose deposition in cell wall2.28E-05
10GO:0006751: glutathione catabolic process9.94E-05
11GO:0006955: immune response1.80E-04
12GO:0090421: embryonic meristem initiation2.48E-04
13GO:1902265: abscisic acid homeostasis2.48E-04
14GO:0046938: phytochelatin biosynthetic process2.48E-04
15GO:0051180: vitamin transport2.48E-04
16GO:0030974: thiamine pyrophosphate transport2.48E-04
17GO:0009865: pollen tube adhesion2.48E-04
18GO:0006680: glucosylceramide catabolic process2.48E-04
19GO:0006355: regulation of transcription, DNA-templated3.09E-04
20GO:0009873: ethylene-activated signaling pathway3.90E-04
21GO:0015709: thiosulfate transport5.49E-04
22GO:0008616: queuosine biosynthetic process5.49E-04
23GO:0071422: succinate transmembrane transport5.49E-04
24GO:0031407: oxylipin metabolic process5.49E-04
25GO:0007000: nucleolus organization5.49E-04
26GO:0055088: lipid homeostasis5.49E-04
27GO:0015908: fatty acid transport5.49E-04
28GO:0006898: receptor-mediated endocytosis5.49E-04
29GO:0015893: drug transport5.49E-04
30GO:0052542: defense response by callose deposition5.49E-04
31GO:0015786: UDP-glucose transport5.49E-04
32GO:0090630: activation of GTPase activity8.92E-04
33GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid8.92E-04
34GO:0015783: GDP-fucose transport8.92E-04
35GO:0046786: viral replication complex formation and maintenance8.92E-04
36GO:0051211: anisotropic cell growth8.92E-04
37GO:0000280: nuclear division8.92E-04
38GO:0044210: 'de novo' CTP biosynthetic process8.92E-04
39GO:0016045: detection of bacterium8.92E-04
40GO:0010359: regulation of anion channel activity8.92E-04
41GO:0006468: protein phosphorylation9.05E-04
42GO:0006470: protein dephosphorylation1.17E-03
43GO:0055089: fatty acid homeostasis1.27E-03
44GO:0010371: regulation of gibberellin biosynthetic process1.27E-03
45GO:0006351: transcription, DNA-templated1.27E-03
46GO:0070301: cellular response to hydrogen peroxide1.27E-03
47GO:0015729: oxaloacetate transport1.27E-03
48GO:0072334: UDP-galactose transmembrane transport1.27E-03
49GO:0015700: arsenite transport1.27E-03
50GO:0080024: indolebutyric acid metabolic process1.27E-03
51GO:0031408: oxylipin biosynthetic process1.32E-03
52GO:0001944: vasculature development1.57E-03
53GO:0009687: abscisic acid metabolic process1.70E-03
54GO:0046345: abscisic acid catabolic process1.70E-03
55GO:0051365: cellular response to potassium ion starvation1.70E-03
56GO:0022622: root system development1.70E-03
57GO:1902347: response to strigolactone1.70E-03
58GO:0032957: inositol trisphosphate metabolic process2.17E-03
59GO:0070897: DNA-templated transcriptional preinitiation complex assembly2.17E-03
60GO:0071423: malate transmembrane transport2.17E-03
61GO:0009823: cytokinin catabolic process2.17E-03
62GO:0006656: phosphatidylcholine biosynthetic process2.17E-03
63GO:0006873: cellular ion homeostasis2.17E-03
64GO:0048497: maintenance of floral organ identity2.17E-03
65GO:0006891: intra-Golgi vesicle-mediated transport2.64E-03
66GO:0035435: phosphate ion transmembrane transport2.67E-03
67GO:0047484: regulation of response to osmotic stress2.67E-03
68GO:0010337: regulation of salicylic acid metabolic process2.67E-03
69GO:0009117: nucleotide metabolic process2.67E-03
70GO:0009611: response to wounding3.04E-03
71GO:0019760: glucosinolate metabolic process3.20E-03
72GO:1901001: negative regulation of response to salt stress3.21E-03
73GO:2000033: regulation of seed dormancy process3.21E-03
74GO:0010016: shoot system morphogenesis3.21E-03
75GO:0010103: stomatal complex morphogenesis3.79E-03
76GO:0032880: regulation of protein localization3.79E-03
77GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.79E-03
78GO:0010161: red light signaling pathway3.79E-03
79GO:0008272: sulfate transport3.79E-03
80GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway3.79E-03
81GO:0009061: anaerobic respiration4.39E-03
82GO:0009819: drought recovery4.39E-03
83GO:0009938: negative regulation of gibberellic acid mediated signaling pathway4.39E-03
84GO:0009690: cytokinin metabolic process4.39E-03
85GO:0009751: response to salicylic acid4.57E-03
86GO:0016049: cell growth4.72E-03
87GO:0009880: embryonic pattern specification5.03E-03
88GO:0006811: ion transport5.48E-03
89GO:0001708: cell fate specification5.70E-03
90GO:0046685: response to arsenic-containing substance5.70E-03
91GO:0006098: pentose-phosphate shunt5.70E-03
92GO:0006952: defense response5.74E-03
93GO:0043067: regulation of programmed cell death6.40E-03
94GO:0048268: clathrin coat assembly6.40E-03
95GO:0007346: regulation of mitotic cell cycle6.40E-03
96GO:0010468: regulation of gene expression6.53E-03
97GO:0009617: response to bacterium6.53E-03
98GO:0019538: protein metabolic process7.12E-03
99GO:0006839: mitochondrial transport7.18E-03
100GO:0006897: endocytosis7.49E-03
101GO:0006631: fatty acid metabolic process7.49E-03
102GO:0030148: sphingolipid biosynthetic process7.88E-03
103GO:0009682: induced systemic resistance7.88E-03
104GO:0048229: gametophyte development7.88E-03
105GO:0006890: retrograde vesicle-mediated transport, Golgi to ER8.66E-03
106GO:0000266: mitochondrial fission8.66E-03
107GO:0010105: negative regulation of ethylene-activated signaling pathway8.66E-03
108GO:0050826: response to freezing9.47E-03
109GO:0018107: peptidyl-threonine phosphorylation9.47E-03
110GO:2000012: regulation of auxin polar transport9.47E-03
111GO:0048467: gynoecium development1.03E-02
112GO:0010030: positive regulation of seed germination1.12E-02
113GO:0070588: calcium ion transmembrane transport1.12E-02
114GO:0009651: response to salt stress1.20E-02
115GO:0009833: plant-type primary cell wall biogenesis1.21E-02
116GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.25E-02
117GO:0007165: signal transduction1.26E-02
118GO:0009863: salicylic acid mediated signaling pathway1.30E-02
119GO:0010187: negative regulation of seed germination1.30E-02
120GO:2000377: regulation of reactive oxygen species metabolic process1.30E-02
121GO:0009737: response to abscisic acid1.31E-02
122GO:0043622: cortical microtubule organization1.39E-02
123GO:0009695: jasmonic acid biosynthetic process1.39E-02
124GO:0051321: meiotic cell cycle1.49E-02
125GO:0045892: negative regulation of transcription, DNA-templated1.53E-02
126GO:0009624: response to nematode1.57E-02
127GO:0080092: regulation of pollen tube growth1.59E-02
128GO:0018105: peptidyl-serine phosphorylation1.61E-02
129GO:0071215: cellular response to abscisic acid stimulus1.69E-02
130GO:0010584: pollen exine formation1.79E-02
131GO:0048443: stamen development1.79E-02
132GO:0042147: retrograde transport, endosome to Golgi1.90E-02
133GO:0008284: positive regulation of cell proliferation1.90E-02
134GO:0042631: cellular response to water deprivation2.01E-02
135GO:0048868: pollen tube development2.12E-02
136GO:0010268: brassinosteroid homeostasis2.12E-02
137GO:0009960: endosperm development2.12E-02
138GO:0010154: fruit development2.12E-02
139GO:0009958: positive gravitropism2.12E-02
140GO:0009646: response to absence of light2.23E-02
141GO:0009790: embryo development2.29E-02
142GO:0010183: pollen tube guidance2.34E-02
143GO:0008654: phospholipid biosynthetic process2.34E-02
144GO:0016132: brassinosteroid biosynthetic process2.46E-02
145GO:0048510: regulation of timing of transition from vegetative to reproductive phase2.46E-02
146GO:0010193: response to ozone2.46E-02
147GO:0016125: sterol metabolic process2.82E-02
148GO:0009639: response to red or far red light2.82E-02
149GO:0009739: response to gibberellin3.03E-02
150GO:0000910: cytokinesis3.07E-02
151GO:0007166: cell surface receptor signaling pathway3.10E-02
152GO:0042742: defense response to bacterium3.19E-02
153GO:0001666: response to hypoxia3.19E-02
154GO:0006979: response to oxidative stress3.22E-02
155GO:0010029: regulation of seed germination3.32E-02
156GO:0009816: defense response to bacterium, incompatible interaction3.32E-02
157GO:0008219: cell death3.86E-02
158GO:0009817: defense response to fungus, incompatible interaction3.86E-02
159GO:0048481: plant ovule development3.86E-02
160GO:0048527: lateral root development4.28E-02
161GO:0035556: intracellular signal transduction4.28E-02
162GO:0016310: phosphorylation4.55E-02
163GO:0009867: jasmonic acid mediated signaling pathway4.56E-02
164GO:0045087: innate immune response4.56E-02
165GO:0009723: response to ethylene4.83E-02
RankGO TermAdjusted P value
1GO:0004698: calcium-dependent protein kinase C activity0.00E+00
2GO:0017048: Rho GTPase binding0.00E+00
3GO:0042171: lysophosphatidic acid acyltransferase activity0.00E+00
4GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity8.84E-08
5GO:0016629: 12-oxophytodienoate reductase activity2.86E-06
6GO:0003840: gamma-glutamyltransferase activity1.03E-05
7GO:0036374: glutathione hydrolase activity1.03E-05
8GO:0003883: CTP synthase activity2.34E-05
9GO:0043565: sequence-specific DNA binding6.83E-05
10GO:0090422: thiamine pyrophosphate transporter activity2.48E-04
11GO:0004105: choline-phosphate cytidylyltransferase activity2.48E-04
12GO:0046870: cadmium ion binding2.48E-04
13GO:0015446: ATPase-coupled arsenite transmembrane transporter activity2.48E-04
14GO:0052638: indole-3-butyrate beta-glucosyltransferase activity2.48E-04
15GO:0004348: glucosylceramidase activity2.48E-04
16GO:0071992: phytochelatin transmembrane transporter activity2.48E-04
17GO:0008479: queuine tRNA-ribosyltransferase activity5.49E-04
18GO:0015117: thiosulfate transmembrane transporter activity5.49E-04
19GO:1901677: phosphate transmembrane transporter activity5.49E-04
20GO:0004385: guanylate kinase activity5.49E-04
21GO:0003700: transcription factor activity, sequence-specific DNA binding5.66E-04
22GO:0044212: transcription regulatory region DNA binding8.70E-04
23GO:0005457: GDP-fucose transmembrane transporter activity8.92E-04
24GO:0047325: inositol tetrakisphosphate 1-kinase activity8.92E-04
25GO:0005310: dicarboxylic acid transmembrane transporter activity8.92E-04
26GO:0015141: succinate transmembrane transporter activity8.92E-04
27GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity8.92E-04
28GO:0010295: (+)-abscisic acid 8'-hydroxylase activity8.92E-04
29GO:0004758: serine C-palmitoyltransferase activity8.92E-04
30GO:0004383: guanylate cyclase activity8.92E-04
31GO:0016301: kinase activity8.93E-04
32GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.27E-03
33GO:0001653: peptide receptor activity1.27E-03
34GO:0015131: oxaloacetate transmembrane transporter activity1.27E-03
35GO:0048487: beta-tubulin binding1.27E-03
36GO:0005460: UDP-glucose transmembrane transporter activity1.27E-03
37GO:0000062: fatty-acyl-CoA binding1.70E-03
38GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.70E-03
39GO:0010294: abscisic acid glucosyltransferase activity2.17E-03
40GO:0005459: UDP-galactose transmembrane transporter activity2.17E-03
41GO:0019139: cytokinin dehydrogenase activity2.17E-03
42GO:0004623: phospholipase A2 activity2.17E-03
43GO:0010181: FMN binding2.31E-03
44GO:0019137: thioglucosidase activity2.67E-03
45GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.40E-03
46GO:0004143: diacylglycerol kinase activity3.79E-03
47GO:0015140: malate transmembrane transporter activity3.79E-03
48GO:0004722: protein serine/threonine phosphatase activity3.90E-03
49GO:0004674: protein serine/threonine kinase activity4.25E-03
50GO:0016209: antioxidant activity4.39E-03
51GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.76E-03
52GO:0008308: voltage-gated anion channel activity5.03E-03
53GO:0005096: GTPase activator activity5.22E-03
54GO:0000989: transcription factor activity, transcription factor binding5.70E-03
55GO:0005545: 1-phosphatidylinositol binding7.12E-03
56GO:0004713: protein tyrosine kinase activity7.12E-03
57GO:0005543: phospholipid binding7.88E-03
58GO:0015116: sulfate transmembrane transporter activity8.66E-03
59GO:0005262: calcium channel activity9.47E-03
60GO:0019888: protein phosphatase regulator activity9.47E-03
61GO:0008083: growth factor activity1.03E-02
62GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.03E-02
63GO:0017025: TBP-class protein binding1.12E-02
64GO:0016298: lipase activity1.14E-02
65GO:0080043: quercetin 3-O-glucosyltransferase activity1.43E-02
66GO:0080044: quercetin 7-O-glucosyltransferase activity1.43E-02
67GO:0016874: ligase activity1.47E-02
68GO:0035251: UDP-glucosyltransferase activity1.49E-02
69GO:0004707: MAP kinase activity1.49E-02
70GO:0030276: clathrin binding2.12E-02
71GO:0015297: antiporter activity2.59E-02
72GO:0003677: DNA binding2.61E-02
73GO:0016722: oxidoreductase activity, oxidizing metal ions2.94E-02
74GO:0008194: UDP-glycosyltransferase activity3.03E-02
75GO:0016597: amino acid binding3.07E-02
76GO:0004683: calmodulin-dependent protein kinase activity3.59E-02
77GO:0102483: scopolin beta-glucosidase activity3.59E-02
78GO:0004721: phosphoprotein phosphatase activity3.59E-02
79GO:0008236: serine-type peptidase activity3.72E-02
80GO:0005524: ATP binding3.82E-02
81GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.14E-02
82GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.28E-02
83GO:0043531: ADP binding4.58E-02
84GO:0046872: metal ion binding4.65E-02
85GO:0008422: beta-glucosidase activity4.86E-02
RankGO TermAdjusted P value
1GO:0070382: exocytic vesicle2.48E-04
2GO:0045177: apical part of cell1.27E-03
3GO:0005905: clathrin-coated pit1.32E-03
4GO:0030136: clathrin-coated vesicle1.84E-03
5GO:0000793: condensed chromosome2.67E-03
6GO:0031463: Cul3-RING ubiquitin ligase complex2.67E-03
7GO:0000794: condensed nuclear chromosome3.79E-03
8GO:0005615: extracellular space6.01E-03
9GO:0016604: nuclear body6.40E-03
10GO:0000159: protein phosphatase type 2A complex7.88E-03
11GO:0005622: intracellular7.99E-03
12GO:0005938: cell cortex9.47E-03
13GO:0005795: Golgi stack1.12E-02
14GO:0005743: mitochondrial inner membrane1.79E-02
15GO:0046658: anchored component of plasma membrane3.59E-02
16GO:0005737: cytoplasm3.73E-02
17GO:0005874: microtubule5.00E-02
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Gene type



Gene DE type