Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G05740

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0030155: regulation of cell adhesion0.00E+00
3GO:0019323: pentose catabolic process0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0090627: plant epidermal cell differentiation0.00E+00
9GO:0015805: S-adenosyl-L-methionine transport0.00E+00
10GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
11GO:0000023: maltose metabolic process0.00E+00
12GO:1905421: regulation of plant organ morphogenesis0.00E+00
13GO:0015979: photosynthesis1.18E-13
14GO:0009735: response to cytokinin1.18E-13
15GO:0032544: plastid translation1.71E-11
16GO:0006412: translation4.62E-11
17GO:0009409: response to cold5.14E-09
18GO:0042254: ribosome biogenesis2.37E-08
19GO:0010027: thylakoid membrane organization2.51E-07
20GO:0019464: glycine decarboxylation via glycine cleavage system7.48E-07
21GO:0009773: photosynthetic electron transport in photosystem I1.47E-06
22GO:0005983: starch catabolic process2.04E-06
23GO:0030388: fructose 1,6-bisphosphate metabolic process6.16E-06
24GO:0015995: chlorophyll biosynthetic process9.70E-06
25GO:0005978: glycogen biosynthetic process1.33E-05
26GO:0042742: defense response to bacterium1.62E-05
27GO:0006000: fructose metabolic process2.16E-05
28GO:0010206: photosystem II repair2.63E-05
29GO:0009658: chloroplast organization3.30E-05
30GO:0019252: starch biosynthetic process4.45E-05
31GO:0043085: positive regulation of catalytic activity5.76E-05
32GO:0010021: amylopectin biosynthetic process8.40E-05
33GO:0045454: cell redox homeostasis1.01E-04
34GO:0010190: cytochrome b6f complex assembly1.88E-04
35GO:0010304: PSII associated light-harvesting complex II catabolic process1.88E-04
36GO:0010196: nonphotochemical quenching3.30E-04
37GO:0009645: response to low light intensity stimulus3.30E-04
38GO:0000025: maltose catabolic process3.70E-04
39GO:0005980: glycogen catabolic process3.70E-04
40GO:0043489: RNA stabilization3.70E-04
41GO:0044262: cellular carbohydrate metabolic process3.70E-04
42GO:0080093: regulation of photorespiration3.70E-04
43GO:0031998: regulation of fatty acid beta-oxidation3.70E-04
44GO:0000413: protein peptidyl-prolyl isomerization4.00E-04
45GO:0006002: fructose 6-phosphate metabolic process5.06E-04
46GO:0010205: photoinhibition7.16E-04
47GO:0005982: starch metabolic process7.16E-04
48GO:0009629: response to gravity8.05E-04
49GO:0019388: galactose catabolic process8.05E-04
50GO:0005976: polysaccharide metabolic process8.05E-04
51GO:1904961: quiescent center organization8.05E-04
52GO:0007154: cell communication8.05E-04
53GO:0010270: photosystem II oxygen evolving complex assembly8.05E-04
54GO:0006094: gluconeogenesis1.24E-03
55GO:0005986: sucrose biosynthetic process1.24E-03
56GO:0009817: defense response to fungus, incompatible interaction1.29E-03
57GO:0048281: inflorescence morphogenesis1.30E-03
58GO:0071367: cellular response to brassinosteroid stimulus1.30E-03
59GO:0006518: peptide metabolic process1.30E-03
60GO:0010581: regulation of starch biosynthetic process1.30E-03
61GO:0090153: regulation of sphingolipid biosynthetic process1.30E-03
62GO:0016050: vesicle organization1.30E-03
63GO:2001295: malonyl-CoA biosynthetic process1.30E-03
64GO:0055114: oxidation-reduction process1.35E-03
65GO:0019253: reductive pentose-phosphate cycle1.40E-03
66GO:0010025: wax biosynthetic process1.74E-03
67GO:0034599: cellular response to oxidative stress1.84E-03
68GO:0006241: CTP biosynthetic process1.88E-03
69GO:0009052: pentose-phosphate shunt, non-oxidative branch1.88E-03
70GO:0010731: protein glutathionylation1.88E-03
71GO:0006424: glutamyl-tRNA aminoacylation1.88E-03
72GO:0006165: nucleoside diphosphate phosphorylation1.88E-03
73GO:0006228: UTP biosynthetic process1.88E-03
74GO:0010148: transpiration1.88E-03
75GO:0009590: detection of gravity1.88E-03
76GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.88E-03
77GO:0051085: chaperone mediated protein folding requiring cofactor1.88E-03
78GO:0006289: nucleotide-excision repair1.93E-03
79GO:0009768: photosynthesis, light harvesting in photosystem I2.13E-03
80GO:0009765: photosynthesis, light harvesting2.52E-03
81GO:0006109: regulation of carbohydrate metabolic process2.52E-03
82GO:0006183: GTP biosynthetic process2.52E-03
83GO:0045727: positive regulation of translation2.52E-03
84GO:2000122: negative regulation of stomatal complex development2.52E-03
85GO:0010600: regulation of auxin biosynthetic process2.52E-03
86GO:0006546: glycine catabolic process2.52E-03
87GO:0010037: response to carbon dioxide2.52E-03
88GO:0006808: regulation of nitrogen utilization2.52E-03
89GO:0015976: carbon utilization2.52E-03
90GO:0035428: hexose transmembrane transport2.57E-03
91GO:0006284: base-excision repair3.04E-03
92GO:0000304: response to singlet oxygen3.23E-03
93GO:0032543: mitochondrial translation3.23E-03
94GO:0006544: glycine metabolic process3.23E-03
95GO:0006097: glyoxylate cycle3.23E-03
96GO:0006461: protein complex assembly3.23E-03
97GO:0006979: response to oxidative stress3.25E-03
98GO:0006662: glycerol ether metabolic process3.84E-03
99GO:0046323: glucose import3.84E-03
100GO:0000470: maturation of LSU-rRNA3.99E-03
101GO:0009913: epidermal cell differentiation3.99E-03
102GO:0006828: manganese ion transport3.99E-03
103GO:0006563: L-serine metabolic process3.99E-03
104GO:0042549: photosystem II stabilization3.99E-03
105GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.99E-03
106GO:0006457: protein folding4.01E-03
107GO:0009955: adaxial/abaxial pattern specification4.81E-03
108GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.81E-03
109GO:0042026: protein refolding4.81E-03
110GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.81E-03
111GO:1901259: chloroplast rRNA processing4.81E-03
112GO:0010555: response to mannitol4.81E-03
113GO:0030163: protein catabolic process5.40E-03
114GO:0070370: cellular heat acclimation5.68E-03
115GO:0010103: stomatal complex morphogenesis5.68E-03
116GO:0010161: red light signaling pathway5.68E-03
117GO:0048564: photosystem I assembly6.61E-03
118GO:0030091: protein repair6.61E-03
119GO:0010928: regulation of auxin mediated signaling pathway6.61E-03
120GO:0009642: response to light intensity6.61E-03
121GO:0009704: de-etiolation6.61E-03
122GO:0006810: transport7.34E-03
123GO:0015996: chlorophyll catabolic process7.58E-03
124GO:0001558: regulation of cell growth7.58E-03
125GO:0019430: removal of superoxide radicals7.58E-03
126GO:0009657: plastid organization7.58E-03
127GO:0017004: cytochrome complex assembly7.58E-03
128GO:0046686: response to cadmium ion8.33E-03
129GO:0006783: heme biosynthetic process8.60E-03
130GO:0018298: protein-chromophore linkage8.97E-03
131GO:0035999: tetrahydrofolate interconversion9.67E-03
132GO:0042761: very long-chain fatty acid biosynthetic process9.67E-03
133GO:0010380: regulation of chlorophyll biosynthetic process9.67E-03
134GO:0006633: fatty acid biosynthetic process9.81E-03
135GO:0006782: protoporphyrinogen IX biosynthetic process1.08E-02
136GO:0043069: negative regulation of programmed cell death1.08E-02
137GO:0007623: circadian rhythm1.11E-02
138GO:0009853: photorespiration1.14E-02
139GO:0006816: calcium ion transport1.19E-02
140GO:0072593: reactive oxygen species metabolic process1.19E-02
141GO:0006415: translational termination1.19E-02
142GO:0009750: response to fructose1.19E-02
143GO:0018119: peptidyl-cysteine S-nitrosylation1.19E-02
144GO:0016485: protein processing1.19E-02
145GO:0045037: protein import into chloroplast stroma1.32E-02
146GO:0006631: fatty acid metabolic process1.36E-02
147GO:0010102: lateral root morphogenesis1.44E-02
148GO:0006108: malate metabolic process1.44E-02
149GO:0006006: glucose metabolic process1.44E-02
150GO:0009767: photosynthetic electron transport chain1.44E-02
151GO:0010207: photosystem II assembly1.57E-02
152GO:0010020: chloroplast fission1.57E-02
153GO:0009266: response to temperature stimulus1.57E-02
154GO:0009644: response to high light intensity1.60E-02
155GO:0005985: sucrose metabolic process1.70E-02
156GO:0006636: unsaturated fatty acid biosynthetic process1.84E-02
157GO:0009944: polarity specification of adaxial/abaxial axis1.98E-02
158GO:0000027: ribosomal large subunit assembly1.98E-02
159GO:0019344: cysteine biosynthetic process1.98E-02
160GO:0009585: red, far-red light phototransduction1.99E-02
161GO:0006418: tRNA aminoacylation for protein translation2.12E-02
162GO:0007017: microtubule-based process2.12E-02
163GO:0051302: regulation of cell division2.12E-02
164GO:0031408: oxylipin biosynthetic process2.27E-02
165GO:0016114: terpenoid biosynthetic process2.27E-02
166GO:0030245: cellulose catabolic process2.42E-02
167GO:0010017: red or far-red light signaling pathway2.42E-02
168GO:0016226: iron-sulfur cluster assembly2.42E-02
169GO:0007005: mitochondrion organization2.42E-02
170GO:0009686: gibberellin biosynthetic process2.58E-02
171GO:0009411: response to UV2.58E-02
172GO:0001944: vasculature development2.58E-02
173GO:0009306: protein secretion2.73E-02
174GO:0009624: response to nematode2.84E-02
175GO:0042335: cuticle development3.06E-02
176GO:0048868: pollen tube development3.23E-02
177GO:0015986: ATP synthesis coupled proton transport3.40E-02
178GO:0006508: proteolysis3.42E-02
179GO:0048825: cotyledon development3.57E-02
180GO:0000302: response to reactive oxygen species3.75E-02
181GO:0032259: methylation3.88E-02
182GO:0042744: hydrogen peroxide catabolic process4.04E-02
183GO:0015031: protein transport4.11E-02
184GO:0009790: embryo development4.14E-02
185GO:0008152: metabolic process4.61E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
3GO:0005363: maltose transmembrane transporter activity0.00E+00
4GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0009899: ent-kaurene synthase activity0.00E+00
9GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
10GO:0051738: xanthophyll binding0.00E+00
11GO:0019843: rRNA binding2.75E-17
12GO:0003735: structural constituent of ribosome2.34E-13
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.31E-07
14GO:0008266: poly(U) RNA binding3.67E-06
15GO:0051920: peroxiredoxin activity5.58E-06
16GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.16E-06
17GO:0016209: antioxidant activity1.33E-05
18GO:0008047: enzyme activator activity4.55E-05
19GO:0004375: glycine dehydrogenase (decarboxylating) activity4.74E-05
20GO:0016851: magnesium chelatase activity4.74E-05
21GO:0005528: FK506 binding1.71E-04
22GO:0008184: glycogen phosphorylase activity3.70E-04
23GO:0004856: xylulokinase activity3.70E-04
24GO:0009496: plastoquinol--plastocyanin reductase activity3.70E-04
25GO:0080132: fatty acid alpha-hydroxylase activity3.70E-04
26GO:0004134: 4-alpha-glucanotransferase activity3.70E-04
27GO:0004645: phosphorylase activity3.70E-04
28GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.70E-04
29GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.70E-04
30GO:0019203: carbohydrate phosphatase activity3.70E-04
31GO:0034256: chlorophyll(ide) b reductase activity3.70E-04
32GO:0008158: hedgehog receptor activity3.70E-04
33GO:0004853: uroporphyrinogen decarboxylase activity3.70E-04
34GO:0045485: omega-6 fatty acid desaturase activity3.70E-04
35GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.70E-04
36GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.70E-04
37GO:0004791: thioredoxin-disulfide reductase activity4.85E-04
38GO:0016491: oxidoreductase activity6.66E-04
39GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.84E-04
40GO:0033201: alpha-1,4-glucan synthase activity8.05E-04
41GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.05E-04
42GO:0004750: ribulose-phosphate 3-epimerase activity8.05E-04
43GO:0018708: thiol S-methyltransferase activity8.05E-04
44GO:0003844: 1,4-alpha-glucan branching enzyme activity8.05E-04
45GO:0004614: phosphoglucomutase activity8.05E-04
46GO:0008967: phosphoglycolate phosphatase activity8.05E-04
47GO:0004618: phosphoglycerate kinase activity8.05E-04
48GO:0010297: heteropolysaccharide binding8.05E-04
49GO:0016168: chlorophyll binding9.89E-04
50GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.30E-03
51GO:0043169: cation binding1.30E-03
52GO:0004373: glycogen (starch) synthase activity1.30E-03
53GO:0005504: fatty acid binding1.30E-03
54GO:0017150: tRNA dihydrouridine synthase activity1.30E-03
55GO:0002161: aminoacyl-tRNA editing activity1.30E-03
56GO:0004148: dihydrolipoyl dehydrogenase activity1.30E-03
57GO:0004075: biotin carboxylase activity1.30E-03
58GO:0045174: glutathione dehydrogenase (ascorbate) activity1.30E-03
59GO:0030267: glyoxylate reductase (NADP) activity1.30E-03
60GO:0004324: ferredoxin-NADP+ reductase activity1.30E-03
61GO:0004222: metalloendopeptidase activity1.45E-03
62GO:0004252: serine-type endopeptidase activity1.68E-03
63GO:0031409: pigment binding1.74E-03
64GO:0019201: nucleotide kinase activity1.88E-03
65GO:0016149: translation release factor activity, codon specific1.88E-03
66GO:0004550: nucleoside diphosphate kinase activity1.88E-03
67GO:0043023: ribosomal large subunit binding1.88E-03
68GO:0045430: chalcone isomerase activity2.52E-03
69GO:0009011: starch synthase activity2.52E-03
70GO:0019199: transmembrane receptor protein kinase activity2.52E-03
71GO:0008878: glucose-1-phosphate adenylyltransferase activity2.52E-03
72GO:0042277: peptide binding2.52E-03
73GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.52E-03
74GO:0019104: DNA N-glycosylase activity2.52E-03
75GO:0022891: substrate-specific transmembrane transporter activity2.80E-03
76GO:0004372: glycine hydroxymethyltransferase activity3.23E-03
77GO:0003959: NADPH dehydrogenase activity3.23E-03
78GO:0016773: phosphotransferase activity, alcohol group as acceptor3.23E-03
79GO:0004040: amidase activity3.23E-03
80GO:0003989: acetyl-CoA carboxylase activity3.23E-03
81GO:0008725: DNA-3-methyladenine glycosylase activity3.23E-03
82GO:0047134: protein-disulfide reductase activity3.30E-03
83GO:0004130: cytochrome-c peroxidase activity3.99E-03
84GO:0016615: malate dehydrogenase activity3.99E-03
85GO:2001070: starch binding3.99E-03
86GO:0005355: glucose transmembrane transporter activity4.13E-03
87GO:0050662: coenzyme binding4.13E-03
88GO:0004601: peroxidase activity4.57E-03
89GO:0048038: quinone binding4.74E-03
90GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.81E-03
91GO:0004017: adenylate kinase activity4.81E-03
92GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.81E-03
93GO:0004602: glutathione peroxidase activity4.81E-03
94GO:0030060: L-malate dehydrogenase activity4.81E-03
95GO:0005337: nucleoside transmembrane transporter activity6.61E-03
96GO:0015078: hydrogen ion transmembrane transporter activity7.58E-03
97GO:0008236: serine-type peptidase activity8.53E-03
98GO:0008138: protein tyrosine/serine/threonine phosphatase activity8.60E-03
99GO:0003747: translation release factor activity8.60E-03
100GO:0005384: manganese ion transmembrane transporter activity9.67E-03
101GO:0005515: protein binding1.02E-02
102GO:0015386: potassium:proton antiporter activity1.19E-02
103GO:0044183: protein binding involved in protein folding1.19E-02
104GO:0047372: acylglycerol lipase activity1.19E-02
105GO:0000049: tRNA binding1.32E-02
106GO:0004022: alcohol dehydrogenase (NAD) activity1.44E-02
107GO:0004089: carbonate dehydratase activity1.44E-02
108GO:0015095: magnesium ion transmembrane transporter activity1.44E-02
109GO:0031072: heat shock protein binding1.44E-02
110GO:0008168: methyltransferase activity1.84E-02
111GO:0001046: core promoter sequence-specific DNA binding1.98E-02
112GO:0051536: iron-sulfur cluster binding1.98E-02
113GO:0004857: enzyme inhibitor activity1.98E-02
114GO:0015079: potassium ion transmembrane transporter activity2.12E-02
115GO:0004176: ATP-dependent peptidase activity2.27E-02
116GO:0008810: cellulase activity2.58E-02
117GO:0051082: unfolded protein binding2.84E-02
118GO:0004812: aminoacyl-tRNA ligase activity2.90E-02
119GO:0015035: protein disulfide oxidoreductase activity2.92E-02
120GO:0030170: pyridoxal phosphate binding3.94E-02
121GO:0016787: hydrolase activity4.05E-02
122GO:0015144: carbohydrate transmembrane transporter activity4.24E-02
123GO:0003684: damaged DNA binding4.30E-02
124GO:0008237: metallopeptidase activity4.49E-02
125GO:0005200: structural constituent of cytoskeleton4.49E-02
126GO:0005351: sugar:proton symporter activity4.77E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0042579: microbody0.00E+00
6GO:0009507: chloroplast4.89E-95
7GO:0009570: chloroplast stroma2.21E-77
8GO:0009941: chloroplast envelope2.78E-75
9GO:0009534: chloroplast thylakoid1.52E-52
10GO:0009579: thylakoid1.67E-44
11GO:0009535: chloroplast thylakoid membrane6.30E-44
12GO:0009543: chloroplast thylakoid lumen9.36E-16
13GO:0031977: thylakoid lumen1.94E-15
14GO:0010319: stromule4.31E-14
15GO:0005840: ribosome6.53E-14
16GO:0010287: plastoglobule5.96E-13
17GO:0009706: chloroplast inner membrane7.68E-08
18GO:0048046: apoplast1.25E-07
19GO:0016020: membrane1.89E-07
20GO:0009533: chloroplast stromal thylakoid8.89E-06
21GO:0010007: magnesium chelatase complex2.16E-05
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.63E-05
23GO:0005960: glycine cleavage complex4.74E-05
24GO:0009295: nucleoid8.25E-05
25GO:0009508: plastid chromosome8.76E-05
26GO:0030095: chloroplast photosystem II1.06E-04
27GO:0009536: plastid1.60E-04
28GO:0031969: chloroplast membrane3.49E-04
29GO:0009782: photosystem I antenna complex3.70E-04
30GO:0009538: photosystem I reaction center4.14E-04
31GO:0009501: amyloplast4.14E-04
32GO:0009523: photosystem II5.31E-04
33GO:0030093: chloroplast photosystem I8.05E-04
34GO:0000311: plastid large ribosomal subunit1.10E-03
35GO:0015934: large ribosomal subunit1.54E-03
36GO:0030076: light-harvesting complex1.57E-03
37GO:0009654: photosystem II oxygen evolving complex2.13E-03
38GO:0009517: PSII associated light-harvesting complex II2.52E-03
39GO:0055035: plastid thylakoid membrane3.23E-03
40GO:0009512: cytochrome b6f complex3.23E-03
41GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.99E-03
42GO:0009522: photosystem I4.13E-03
43GO:0019898: extrinsic component of membrane4.43E-03
44GO:0009840: chloroplastic endopeptidase Clp complex4.81E-03
45GO:0022625: cytosolic large ribosomal subunit6.85E-03
46GO:0022626: cytosolic ribosome7.64E-03
47GO:0042644: chloroplast nucleoid8.60E-03
48GO:0045298: tubulin complex8.60E-03
49GO:0005763: mitochondrial small ribosomal subunit8.60E-03
50GO:0000312: plastid small ribosomal subunit1.57E-02
51GO:0043234: protein complex1.84E-02
52GO:0042651: thylakoid membrane2.12E-02
53GO:0015935: small ribosomal subunit2.27E-02
54GO:0009532: plastid stroma2.27E-02
55GO:0005623: cell3.64E-02
56GO:0005759: mitochondrial matrix4.45E-02
57GO:0030529: intracellular ribonucleoprotein complex4.87E-02
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Gene type



Gene DE type