co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G05580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0009773: photosynthetic electron transport in photosystem I	1.45E-07
6	GO:0015979: photosynthesis	2.60E-07
7	GO:0018026: peptidyl-lysine monomethylation	1.59E-06
8	GO:0010206: photosystem II repair	4.68E-06
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.35E-05
10	GO:0010027: thylakoid membrane organization	1.40E-05
11	GO:0015995: chlorophyll biosynthetic process	1.96E-05
12	GO:0061077: chaperone-mediated protein folding	5.04E-05
13	GO:0042026: protein refolding	8.36E-05
14	GO:1901259: chloroplast rRNA processing	8.36E-05
15	GO:0043686: co-translational protein modification	1.82E-04
16	GO:1902458: positive regulation of stomatal opening	1.82E-04
17	GO:0006729: tetrahydrobiopterin biosynthetic process	4.10E-04
18	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.10E-04
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.10E-04
20	GO:0019388: galactose catabolic process	4.10E-04
21	GO:0010207: photosystem II assembly	5.21E-04
22	GO:0006000: fructose metabolic process	6.69E-04
23	GO:0009405: pathogenesis	6.69E-04
24	GO:0006810: transport	7.53E-04
25	GO:0009658: chloroplast organization	9.50E-04
26	GO:0071484: cellular response to light intensity	9.55E-04
27	GO:0051085: chaperone mediated protein folding requiring cofactor	9.55E-04
28	GO:0010239: chloroplast mRNA processing	9.55E-04
29	GO:0009590: detection of gravity	9.55E-04
30	GO:0019464: glycine decarboxylation via glycine cleavage system	1.27E-03
31	GO:0015994: chlorophyll metabolic process	1.27E-03
32	GO:0006552: leucine catabolic process	1.27E-03
33	GO:0006546: glycine catabolic process	1.27E-03
34	GO:0045038: protein import into chloroplast thylakoid membrane	1.61E-03
35	GO:0031365: N-terminal protein amino acid modification	1.61E-03
36	GO:0010236: plastoquinone biosynthetic process	1.61E-03
37	GO:0042549: photosystem II stabilization	1.98E-03
38	GO:0042793: transcription from plastid promoter	1.98E-03
39	GO:0010190: cytochrome b6f complex assembly	1.98E-03
40	GO:0010189: vitamin E biosynthetic process	2.38E-03
41	GO:0006458: 'de novo' protein folding	2.38E-03
42	GO:0009627: systemic acquired resistance	2.74E-03
43	GO:0022904: respiratory electron transport chain	2.80E-03
44	GO:0018298: protein-chromophore linkage	3.20E-03
45	GO:2000070: regulation of response to water deprivation	3.24E-03
46	GO:0000105: histidine biosynthetic process	3.24E-03
47	GO:0009231: riboflavin biosynthetic process	3.24E-03
48	GO:0005978: glycogen biosynthetic process	3.24E-03
49	GO:0009642: response to light intensity	3.24E-03
50	GO:0017004: cytochrome complex assembly	3.71E-03
51	GO:0006002: fructose 6-phosphate metabolic process	3.71E-03
52	GO:0015996: chlorophyll catabolic process	3.71E-03
53	GO:0007186: G-protein coupled receptor signaling pathway	3.71E-03
54	GO:0006779: porphyrin-containing compound biosynthetic process	4.71E-03
55	GO:0009735: response to cytokinin	4.94E-03
56	GO:0006782: protoporphyrinogen IX biosynthetic process	5.24E-03
57	GO:0019684: photosynthesis, light reaction	5.79E-03
58	GO:0009089: lysine biosynthetic process via diaminopimelate	5.79E-03
59	GO:0009073: aromatic amino acid family biosynthetic process	5.79E-03
60	GO:0005983: starch catabolic process	6.35E-03
61	GO:0045037: protein import into chloroplast stroma	6.35E-03
62	GO:0006094: gluconeogenesis	6.94E-03
63	GO:0005986: sucrose biosynthetic process	6.94E-03
64	GO:0006006: glucose metabolic process	6.94E-03
65	GO:0006302: double-strand break repair	7.55E-03
66	GO:0010020: chloroplast fission	7.55E-03
67	GO:0019253: reductive pentose-phosphate cycle	7.55E-03
68	GO:0010030: positive regulation of seed germination	8.18E-03
69	GO:0005985: sucrose metabolic process	8.18E-03
70	GO:0006457: protein folding	8.37E-03
71	GO:0000162: tryptophan biosynthetic process	8.82E-03
72	GO:0009768: photosynthesis, light harvesting in photosystem I	1.02E-02
73	GO:0051321: meiotic cell cycle	1.09E-02
74	GO:0007005: mitochondrion organization	1.16E-02
75	GO:0006412: translation	1.17E-02
76	GO:0071369: cellular response to ethylene stimulus	1.23E-02
77	GO:0009561: megagametogenesis	1.31E-02
78	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.38E-02
79	GO:0042631: cellular response to water deprivation	1.46E-02
80	GO:0010182: sugar mediated signaling pathway	1.54E-02
81	GO:0009646: response to absence of light	1.62E-02
82	GO:0006979: response to oxidative stress	1.66E-02
83	GO:0019252: starch biosynthetic process	1.70E-02
84	GO:0071554: cell wall organization or biogenesis	1.79E-02
85	GO:0009409: response to cold	2.58E-02
86	GO:0016311: dephosphorylation	2.71E-02
87	GO:0042254: ribosome biogenesis	2.74E-02
88	GO:0008219: cell death	2.81E-02
89	GO:0009813: flavonoid biosynthetic process	2.91E-02
90	GO:0010218: response to far red light	3.01E-02
91	GO:0009637: response to blue light	3.32E-02
92	GO:0009867: jasmonic acid mediated signaling pathway	3.32E-02
93	GO:0006631: fatty acid metabolic process	3.76E-02
94	GO:0010114: response to red light	3.98E-02
95	GO:0032259: methylation	4.69E-02
96	GO:0006364: rRNA processing	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
3	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0048039: ubiquinone binding	0.00E+00
9	GO:0051082: unfolded protein binding	9.00E-07
10	GO:0031072: heat shock protein binding	1.74E-05
11	GO:0016279: protein-lysine N-methyltransferase activity	2.51E-05
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.51E-05
13	GO:0005528: FK506 binding	3.69E-05
14	GO:0080030: methyl indole-3-acetate esterase activity	6.00E-05
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.43E-05
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.82E-04
17	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.82E-04
18	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.82E-04
19	GO:0050308: sugar-phosphatase activity	1.82E-04
20	GO:0042586: peptide deformylase activity	1.82E-04
21	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.82E-04
22	GO:0019203: carbohydrate phosphatase activity	1.82E-04
23	GO:0019843: rRNA binding	2.94E-04
24	GO:0044183: protein binding involved in protein folding	3.54E-04
25	GO:0047746: chlorophyllase activity	4.10E-04
26	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.10E-04
27	GO:0016630: protochlorophyllide reductase activity	4.10E-04
28	GO:0004614: phosphoglucomutase activity	4.10E-04
29	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.10E-04
30	GO:0003913: DNA photolyase activity	6.69E-04
31	GO:0005504: fatty acid binding	6.69E-04
32	GO:0090729: toxin activity	6.69E-04
33	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.55E-04
34	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.55E-04
35	GO:0016851: magnesium chelatase activity	9.55E-04
36	GO:0080032: methyl jasmonate esterase activity	1.27E-03
37	GO:0045430: chalcone isomerase activity	1.27E-03
38	GO:0003959: NADPH dehydrogenase activity	1.61E-03
39	GO:0048038: quinone binding	1.71E-03
40	GO:2001070: starch binding	1.98E-03
41	GO:0004602: glutathione peroxidase activity	2.38E-03
42	GO:0009055: electron carrier activity	2.63E-03
43	GO:0009881: photoreceptor activity	2.80E-03
44	GO:0004033: aldo-keto reductase (NADP) activity	3.24E-03
45	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.20E-03
46	GO:0000287: magnesium ion binding	5.03E-03
47	GO:0016788: hydrolase activity, acting on ester bonds	5.28E-03
48	GO:0004521: endoribonuclease activity	6.35E-03
49	GO:0004565: beta-galactosidase activity	6.94E-03
50	GO:0016491: oxidoreductase activity	7.42E-03
51	GO:0031409: pigment binding	8.82E-03
52	GO:0008026: ATP-dependent helicase activity	1.06E-02
53	GO:0008408: 3'-5' exonuclease activity	1.09E-02
54	GO:0003756: protein disulfide isomerase activity	1.31E-02
55	GO:0003735: structural constituent of ribosome	1.52E-02
56	GO:0008483: transaminase activity	2.14E-02
57	GO:0016413: O-acetyltransferase activity	2.23E-02
58	GO:0016168: chlorophyll binding	2.42E-02
59	GO:0008168: methyltransferase activity	2.59E-02
60	GO:0008236: serine-type peptidase activity	2.71E-02
61	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.71E-02
62	GO:0030145: manganese ion binding	3.11E-02
63	GO:0003746: translation elongation factor activity	3.32E-02
64	GO:0003993: acid phosphatase activity	3.43E-02
65	GO:0051539: 4 iron, 4 sulfur cluster binding	3.65E-02
66	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02
67	GO:0005525: GTP binding	4.26E-02
68	GO:0005198: structural molecule activity	4.32E-02
69	GO:0004722: protein serine/threonine phosphatase activity	4.36E-02
70	GO:0003924: GTPase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0009507: chloroplast	4.01E-45
5	GO:0009535: chloroplast thylakoid membrane	7.86E-24
6	GO:0009570: chloroplast stroma	2.71E-20
7	GO:0009941: chloroplast envelope	1.49E-17
8	GO:0009534: chloroplast thylakoid	2.24E-16
9	GO:0009543: chloroplast thylakoid lumen	9.78E-11
10	GO:0009579: thylakoid	5.10E-10
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.41E-08
12	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.59E-06
13	GO:0010319: stromule	1.09E-05
14	GO:0042646: plastid nucleoid	1.35E-05
15	GO:0030095: chloroplast photosystem II	2.15E-05
16	GO:0031977: thylakoid lumen	5.42E-05
17	GO:0000791: euchromatin	1.82E-04
18	GO:0009295: nucleoid	2.10E-04
19	GO:0042644: chloroplast nucleoid	2.17E-04
20	GO:0030870: Mre11 complex	4.10E-04
21	GO:0009508: plastid chromosome	4.63E-04
22	GO:0009528: plastid inner membrane	6.69E-04
23	GO:0010007: magnesium chelatase complex	6.69E-04
24	GO:0009654: photosystem II oxygen evolving complex	7.90E-04
25	GO:0042651: thylakoid membrane	7.90E-04
26	GO:0009532: plastid stroma	8.65E-04
27	GO:0005960: glycine cleavage complex	9.55E-04
28	GO:0009527: plastid outer membrane	1.27E-03
29	GO:0019898: extrinsic component of membrane	1.60E-03
30	GO:0000795: synaptonemal complex	1.61E-03
31	GO:0048046: apoplast	1.83E-03
32	GO:0010287: plastoglobule	1.84E-03
33	GO:0016272: prefoldin complex	2.38E-03
34	GO:0031305: integral component of mitochondrial inner membrane	3.24E-03
35	GO:0009538: photosystem I reaction center	3.24E-03
36	GO:0015934: large ribosomal subunit	3.70E-03
37	GO:0005840: ribosome	4.99E-03
38	GO:0055028: cortical microtubule	5.24E-03
39	GO:0005740: mitochondrial envelope	5.24E-03
40	GO:0005874: microtubule	6.49E-03
41	GO:0030076: light-harvesting complex	8.18E-03
42	GO:0009706: chloroplast inner membrane	1.00E-02
43	GO:0015935: small ribosomal subunit	1.09E-02
44	GO:0009522: photosystem I	1.62E-02
45	GO:0000785: chromatin	1.87E-02
46	GO:0022626: cytosolic ribosome	2.17E-02
47	GO:0009707: chloroplast outer membrane	2.81E-02
48	GO:0031969: chloroplast membrane	3.33E-02