co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006005: L-fucose biosynthetic process	0.00E+00
2	GO:0032499: detection of peptidoglycan	0.00E+00
3	GO:2001143: N-methylnicotinate transport	0.00E+00
4	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
5	GO:0090352: regulation of nitrate assimilation	0.00E+00
6	GO:2001142: nicotinate transport	0.00E+00
7	GO:0010247: detection of phosphate ion	0.00E+00
8	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
9	GO:0009699: phenylpropanoid biosynthetic process	4.44E-09
10	GO:0080167: response to karrikin	4.42E-05
11	GO:0006744: ubiquinone biosynthetic process	4.52E-05
12	GO:0046244: salicylic acid catabolic process	1.02E-04
13	GO:0018920: glyphosate metabolic process	1.02E-04
14	GO:0080157: regulation of plant-type cell wall organization or biogenesis	1.02E-04
15	GO:0099636: cytoplasmic streaming	1.02E-04
16	GO:0032491: detection of molecule of fungal origin	1.02E-04
17	GO:0042350: GDP-L-fucose biosynthetic process	1.02E-04
18	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.02E-04
19	GO:0010113: negative regulation of systemic acquired resistance	1.02E-04
20	GO:0051014: actin filament severing	1.02E-04
21	GO:0090332: stomatal closure	1.12E-04
22	GO:0009073: aromatic amino acid family biosynthetic process	1.56E-04
23	GO:0009698: phenylpropanoid metabolic process	1.56E-04
24	GO:0010155: regulation of proton transport	2.40E-04
25	GO:0009805: coumarin biosynthetic process	2.40E-04
26	GO:0010372: positive regulation of gibberellin biosynthetic process	2.40E-04
27	GO:0009225: nucleotide-sugar metabolic process	2.67E-04
28	GO:0010187: negative regulation of seed germination	3.32E-04
29	GO:0009611: response to wounding	3.35E-04
30	GO:0016310: phosphorylation	3.88E-04
31	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	3.99E-04
32	GO:0010447: response to acidic pH	3.99E-04
33	GO:0070475: rRNA base methylation	3.99E-04
34	GO:0061077: chaperone-mediated protein folding	4.03E-04
35	GO:0046777: protein autophosphorylation	4.36E-04
36	GO:0006468: protein phosphorylation	5.14E-04
37	GO:0051131: chaperone-mediated protein complex assembly	5.73E-04
38	GO:0009800: cinnamic acid biosynthetic process	5.73E-04
39	GO:0071323: cellular response to chitin	5.73E-04
40	GO:0009408: response to heat	7.13E-04
41	GO:2000122: negative regulation of stomatal complex development	7.62E-04
42	GO:0071219: cellular response to molecule of bacterial origin	7.62E-04
43	GO:1902347: response to strigolactone	7.62E-04
44	GO:0045227: capsule polysaccharide biosynthetic process	7.62E-04
45	GO:0033320: UDP-D-xylose biosynthetic process	7.62E-04
46	GO:0010483: pollen tube reception	7.62E-04
47	GO:0051764: actin crosslink formation	7.62E-04
48	GO:0033358: UDP-L-arabinose biosynthetic process	7.62E-04
49	GO:0030041: actin filament polymerization	9.62E-04
50	GO:0030308: negative regulation of cell growth	9.62E-04
51	GO:0006904: vesicle docking involved in exocytosis	1.02E-03
52	GO:0010286: heat acclimation	1.02E-03
53	GO:0009615: response to virus	1.14E-03
54	GO:0033365: protein localization to organelle	1.17E-03
55	GO:0010337: regulation of salicylic acid metabolic process	1.17E-03
56	GO:0000470: maturation of LSU-rRNA	1.17E-03
57	GO:0042732: D-xylose metabolic process	1.17E-03
58	GO:0048317: seed morphogenesis	1.17E-03
59	GO:0006559: L-phenylalanine catabolic process	1.17E-03
60	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.20E-03
61	GO:0009816: defense response to bacterium, incompatible interaction	1.20E-03
62	GO:0009423: chorismate biosynthetic process	1.40E-03
63	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	1.65E-03
64	GO:0010044: response to aluminum ion	1.65E-03
65	GO:0051693: actin filament capping	1.65E-03
66	GO:0006402: mRNA catabolic process	1.90E-03
67	GO:2000070: regulation of response to water deprivation	1.90E-03
68	GO:0050821: protein stabilization	1.90E-03
69	GO:0045010: actin nucleation	1.90E-03
70	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.90E-03
71	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.90E-03
72	GO:0009819: drought recovery	1.90E-03
73	GO:0010052: guard cell differentiation	2.17E-03
74	GO:0017004: cytochrome complex assembly	2.17E-03
75	GO:0009808: lignin metabolic process	2.17E-03
76	GO:0015996: chlorophyll catabolic process	2.17E-03
77	GO:0006887: exocytosis	2.19E-03
78	GO:0048589: developmental growth	2.45E-03
79	GO:0007338: single fertilization	2.45E-03
80	GO:0046685: response to arsenic-containing substance	2.45E-03
81	GO:0030042: actin filament depolymerization	2.74E-03
82	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.05E-03
83	GO:0019538: protein metabolic process	3.05E-03
84	GO:0010224: response to UV-B	3.30E-03
85	GO:0010015: root morphogenesis	3.36E-03
86	GO:0016925: protein sumoylation	3.69E-03
87	GO:0000266: mitochondrial fission	3.69E-03
88	GO:0050826: response to freezing	4.02E-03
89	GO:0046274: lignin catabolic process	4.02E-03
90	GO:0055046: microgametogenesis	4.02E-03
91	GO:0007015: actin filament organization	4.37E-03
92	GO:0034605: cellular response to heat	4.37E-03
93	GO:0006396: RNA processing	4.66E-03
94	GO:0090351: seedling development	4.72E-03
95	GO:0070588: calcium ion transmembrane transport	4.72E-03
96	GO:0046854: phosphatidylinositol phosphorylation	4.72E-03
97	GO:0042742: defense response to bacterium	4.91E-03
98	GO:0080147: root hair cell development	5.46E-03
99	GO:0051017: actin filament bundle assembly	5.46E-03
100	GO:0007010: cytoskeleton organization	5.46E-03
101	GO:0009845: seed germination	6.12E-03
102	GO:0098542: defense response to other organism	6.24E-03
103	GO:0009411: response to UV	7.06E-03
104	GO:0040007: growth	7.06E-03
105	GO:0006012: galactose metabolic process	7.06E-03
106	GO:0071215: cellular response to abscisic acid stimulus	7.06E-03
107	GO:0009686: gibberellin biosynthetic process	7.06E-03
108	GO:0006817: phosphate ion transport	7.48E-03
109	GO:0009306: protein secretion	7.48E-03
110	GO:0009561: megagametogenesis	7.48E-03
111	GO:0042631: cellular response to water deprivation	8.35E-03
112	GO:0009741: response to brassinosteroid	8.80E-03
113	GO:0009960: endosperm development	8.80E-03
114	GO:0007166: cell surface receptor signaling pathway	8.93E-03
115	GO:0046686: response to cadmium ion	9.61E-03
116	GO:0009791: post-embryonic development	9.73E-03
117	GO:0010183: pollen tube guidance	9.73E-03
118	GO:0031047: gene silencing by RNA	1.07E-02
119	GO:0032502: developmental process	1.07E-02
120	GO:1901657: glycosyl compound metabolic process	1.12E-02
121	GO:0006457: protein folding	1.16E-02
122	GO:0016579: protein deubiquitination	1.27E-02
123	GO:0001666: response to hypoxia	1.32E-02
124	GO:0048366: leaf development	1.43E-02
125	GO:0048573: photoperiodism, flowering	1.48E-02
126	GO:0016049: cell growth	1.54E-02
127	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.55E-02
128	GO:0048481: plant ovule development	1.60E-02
129	GO:0009817: defense response to fungus, incompatible interaction	1.60E-02
130	GO:0048767: root hair elongation	1.65E-02
131	GO:0009813: flavonoid biosynthetic process	1.65E-02
132	GO:0006499: N-terminal protein myristoylation	1.71E-02
133	GO:0009910: negative regulation of flower development	1.77E-02
134	GO:0045087: innate immune response	1.89E-02
135	GO:0008283: cell proliferation	2.26E-02
136	GO:0048364: root development	2.32E-02
137	GO:0008152: metabolic process	2.45E-02
138	GO:0009965: leaf morphogenesis	2.46E-02
139	GO:0016567: protein ubiquitination	2.62E-02
140	GO:0009809: lignin biosynthetic process	2.80E-02
141	GO:0006417: regulation of translation	3.01E-02
142	GO:0009620: response to fungus	3.37E-02
143	GO:0016569: covalent chromatin modification	3.44E-02
144	GO:0009553: embryo sac development	3.52E-02
145	GO:0009742: brassinosteroid mediated signaling pathway	3.75E-02
146	GO:0009555: pollen development	3.93E-02
147	GO:0035556: intracellular signal transduction	4.15E-02

Rank	GO Term	Adjusted P value
1	GO:0046409: p-coumarate 3-hydroxylase activity	0.00E+00
2	GO:2001080: chitosan binding	0.00E+00
3	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
4	GO:0090416: nicotinate transporter activity	0.00E+00
5	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
6	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
7	GO:0005524: ATP binding	3.10E-09
8	GO:0016301: kinase activity	4.64E-08
9	GO:0002020: protease binding	1.55E-05
10	GO:0004674: protein serine/threonine kinase activity	2.88E-05
11	GO:0016207: 4-coumarate-CoA ligase activity	9.24E-05
12	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	1.02E-04
13	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	1.02E-04
14	GO:0050577: GDP-L-fucose synthase activity	1.02E-04
15	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	2.40E-04
16	GO:0045548: phenylalanine ammonia-lyase activity	3.99E-04
17	GO:0016874: ligase activity	5.14E-04
18	GO:0019789: SUMO transferase activity	5.73E-04
19	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	5.73E-04
20	GO:0050373: UDP-arabinose 4-epimerase activity	7.62E-04
21	GO:0019199: transmembrane receptor protein kinase activity	7.62E-04
22	GO:0047631: ADP-ribose diphosphatase activity	9.62E-04
23	GO:0048040: UDP-glucuronate decarboxylase activity	1.17E-03
24	GO:0004656: procollagen-proline 4-dioxygenase activity	1.40E-03
25	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.40E-03
26	GO:0070403: NAD+ binding	1.40E-03
27	GO:0004012: phospholipid-translocating ATPase activity	1.40E-03
28	GO:0003978: UDP-glucose 4-epimerase activity	1.40E-03
29	GO:0004143: diacylglycerol kinase activity	1.65E-03
30	GO:0004525: ribonuclease III activity	1.90E-03
31	GO:0004564: beta-fructofuranosidase activity	1.90E-03
32	GO:0003951: NAD+ kinase activity	2.17E-03
33	GO:0004430: 1-phosphatidylinositol 4-kinase activity	2.17E-03
34	GO:0004575: sucrose alpha-glucosidase activity	2.74E-03
35	GO:0005388: calcium-transporting ATPase activity	4.02E-03
36	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.02E-03
37	GO:0003779: actin binding	4.39E-03
38	GO:0051082: unfolded protein binding	4.52E-03
39	GO:0008061: chitin binding	4.72E-03
40	GO:0031418: L-ascorbic acid binding	5.46E-03
41	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.24E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	7.06E-03
43	GO:0004842: ubiquitin-protein transferase activity	8.02E-03
44	GO:0004672: protein kinase activity	8.79E-03
45	GO:0003729: mRNA binding	8.97E-03
46	GO:0050662: coenzyme binding	9.26E-03
47	GO:0016853: isomerase activity	9.26E-03
48	GO:0042802: identical protein binding	9.93E-03
49	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.02E-02
50	GO:0004518: nuclease activity	1.07E-02
51	GO:0051015: actin filament binding	1.12E-02
52	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.22E-02
53	GO:0005515: protein binding	1.46E-02
54	GO:0102483: scopolin beta-glucosidase activity	1.48E-02
55	GO:0030247: polysaccharide binding	1.48E-02
56	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.77E-02
57	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.89E-02
58	GO:0008422: beta-glucosidase activity	2.01E-02
59	GO:0005506: iron ion binding	2.01E-02
60	GO:0022857: transmembrane transporter activity	3.44E-02
61	GO:0003676: nucleic acid binding	4.06E-02
62	GO:0015144: carbohydrate transmembrane transporter activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0043680: filiform apparatus	0.00E+00
2	GO:0005886: plasma membrane	2.44E-08
3	GO:0016442: RISC complex	1.02E-04
4	GO:0000145: exocyst	8.55E-04
5	GO:0005746: mitochondrial respiratory chain	9.62E-04
6	GO:0032580: Golgi cisterna membrane	9.62E-04
7	GO:0016021: integral component of membrane	1.27E-03
8	GO:0016363: nuclear matrix	1.40E-03
9	GO:0009506: plasmodesma	2.06E-03
10	GO:0010494: cytoplasmic stress granule	2.45E-03
11	GO:0090404: pollen tube tip	3.36E-03
12	GO:0048471: perinuclear region of cytoplasm	3.36E-03
13	GO:0005884: actin filament	3.36E-03
14	GO:0005618: cell wall	3.81E-03
15	GO:0005741: mitochondrial outer membrane	6.24E-03
16	GO:0005770: late endosome	8.80E-03
17	GO:0005789: endoplasmic reticulum membrane	9.33E-03
18	GO:0005794: Golgi apparatus	1.15E-02
19	GO:0000932: P-body	1.32E-02
20	GO:0005788: endoplasmic reticulum lumen	1.38E-02
21	GO:0005829: cytosol	1.89E-02
22	GO:0031902: late endosome membrane	2.13E-02
23	GO:0090406: pollen tube	2.26E-02
24	GO:0043231: intracellular membrane-bounded organelle	2.45E-02
25	GO:0005856: cytoskeleton	2.46E-02
26	GO:0031966: mitochondrial membrane	2.66E-02
27	GO:0005635: nuclear envelope	2.94E-02
28	GO:0016020: membrane	3.05E-02
29	GO:0005774: vacuolar membrane	3.16E-02
30	GO:0016607: nuclear speck	3.22E-02
31	GO:0005783: endoplasmic reticulum	3.25E-02
32	GO:0005834: heterotrimeric G-protein complex	3.30E-02
33	GO:0022626: cytosolic ribosome	3.77E-02
34	GO:0005623: cell	4.30E-02
35	GO:0009524: phragmoplast	4.38E-02