co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000372: Group I intron splicing	0.00E+00
2	GO:0008298: intracellular mRNA localization	0.00E+00
3	GO:0006399: tRNA metabolic process	0.00E+00
4	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
5	GO:0009451: RNA modification	2.19E-07
6	GO:0009793: embryo development ending in seed dormancy	4.09E-06
7	GO:0016120: carotene biosynthetic process	1.16E-05
8	GO:0016123: xanthophyll biosynthetic process	1.16E-05
9	GO:0048564: photosystem I assembly	4.50E-05
10	GO:1904966: positive regulation of vitamin E biosynthetic process	8.61E-05
11	GO:1904964: positive regulation of phytol biosynthetic process	8.61E-05
12	GO:0042371: vitamin K biosynthetic process	8.61E-05
13	GO:0006419: alanyl-tRNA aminoacylation	8.61E-05
14	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.04E-04
15	GO:0034755: iron ion transmembrane transport	2.04E-04
16	GO:0080005: photosystem stoichiometry adjustment	2.04E-04
17	GO:0005977: glycogen metabolic process	3.42E-04
18	GO:0008033: tRNA processing	4.86E-04
19	GO:0090307: mitotic spindle assembly	4.92E-04
20	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	4.92E-04
21	GO:0009226: nucleotide-sugar biosynthetic process	4.92E-04
22	GO:2001141: regulation of RNA biosynthetic process	4.92E-04
23	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.92E-04
24	GO:0031122: cytoplasmic microtubule organization	6.55E-04
25	GO:0010021: amylopectin biosynthetic process	6.55E-04
26	GO:0009765: photosynthesis, light harvesting	6.55E-04
27	GO:0006564: L-serine biosynthetic process	8.29E-04
28	GO:0032973: amino acid export	1.01E-03
29	GO:0006400: tRNA modification	1.41E-03
30	GO:0006401: RNA catabolic process	1.41E-03
31	GO:0043090: amino acid import	1.41E-03
32	GO:0042255: ribosome assembly	1.63E-03
33	GO:0006353: DNA-templated transcription, termination	1.63E-03
34	GO:0006402: mRNA catabolic process	1.63E-03
35	GO:0009657: plastid organization	1.86E-03
36	GO:0071482: cellular response to light stimulus	1.86E-03
37	GO:0080144: amino acid homeostasis	2.10E-03
38	GO:0000373: Group II intron splicing	2.10E-03
39	GO:0009051: pentose-phosphate shunt, oxidative branch	2.10E-03
40	GO:0006098: pentose-phosphate shunt	2.10E-03
41	GO:0031425: chloroplast RNA processing	2.35E-03
42	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.61E-03
43	GO:0009773: photosynthetic electron transport in photosystem I	2.87E-03
44	GO:0006415: translational termination	2.87E-03
45	GO:1903507: negative regulation of nucleic acid-templated transcription	2.87E-03
46	GO:0006879: cellular iron ion homeostasis	2.87E-03
47	GO:0006352: DNA-templated transcription, initiation	2.87E-03
48	GO:0010628: positive regulation of gene expression	3.43E-03
49	GO:0006006: glucose metabolic process	3.43E-03
50	GO:0006094: gluconeogenesis	3.43E-03
51	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.66E-03
52	GO:0080092: regulation of pollen tube growth	5.66E-03
53	GO:0016117: carotenoid biosynthetic process	6.73E-03
54	GO:0048868: pollen tube development	7.48E-03
55	GO:0007018: microtubule-based movement	7.87E-03
56	GO:0019252: starch biosynthetic process	8.26E-03
57	GO:0010193: response to ozone	8.66E-03
58	GO:0016032: viral process	9.07E-03
59	GO:0032502: developmental process	9.07E-03
60	GO:0009658: chloroplast organization	9.57E-03
61	GO:0001666: response to hypoxia	1.12E-02
62	GO:0080167: response to karrikin	1.19E-02
63	GO:0015995: chlorophyll biosynthetic process	1.26E-02
64	GO:0009817: defense response to fungus, incompatible interaction	1.35E-02
65	GO:0018298: protein-chromophore linkage	1.35E-02
66	GO:0015979: photosynthesis	1.36E-02
67	GO:0009637: response to blue light	1.60E-02
68	GO:0006397: mRNA processing	1.83E-02
69	GO:0010114: response to red light	1.92E-02
70	GO:0031347: regulation of defense response	2.19E-02
71	GO:0006364: rRNA processing	2.37E-02
72	GO:0010224: response to UV-B	2.43E-02
73	GO:0006096: glycolytic process	2.67E-02
74	GO:0009553: embryo sac development	2.98E-02
75	GO:0006396: RNA processing	3.11E-02
76	GO:0009555: pollen development	3.12E-02
77	GO:0009611: response to wounding	3.19E-02
78	GO:0055085: transmembrane transport	3.95E-02
79	GO:0009790: embryo development	3.99E-02
80	GO:0016036: cellular response to phosphate starvation	4.27E-02
81	GO:0007166: cell surface receptor signaling pathway	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0004519: endonuclease activity	6.15E-06
4	GO:0003723: RNA binding	6.44E-05
5	GO:0004813: alanine-tRNA ligase activity	8.61E-05
6	GO:0004654: polyribonucleotide nucleotidyltransferase activity	8.61E-05
7	GO:0019156: isoamylase activity	2.04E-04
8	GO:0004617: phosphoglycerate dehydrogenase activity	2.04E-04
9	GO:0016149: translation release factor activity, codon specific	4.92E-04
10	GO:0043495: protein anchor	6.55E-04
11	GO:0001053: plastid sigma factor activity	6.55E-04
12	GO:0004345: glucose-6-phosphate dehydrogenase activity	6.55E-04
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.55E-04
14	GO:0016987: sigma factor activity	6.55E-04
15	GO:0043015: gamma-tubulin binding	6.55E-04
16	GO:0051011: microtubule minus-end binding	8.29E-04
17	GO:0016597: amino acid binding	8.66E-04
18	GO:0004556: alpha-amylase activity	1.01E-03
19	GO:0004332: fructose-bisphosphate aldolase activity	1.01E-03
20	GO:0008195: phosphatidate phosphatase activity	1.20E-03
21	GO:0015631: tubulin binding	1.20E-03
22	GO:0019899: enzyme binding	1.41E-03
23	GO:0003747: translation release factor activity	2.10E-03
24	GO:0005381: iron ion transmembrane transporter activity	2.35E-03
25	GO:0003777: microtubule motor activity	2.80E-03
26	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.87E-03
27	GO:0000049: tRNA binding	3.15E-03
28	GO:0000175: 3'-5'-exoribonuclease activity	3.43E-03
29	GO:0019843: rRNA binding	4.49E-03
30	GO:0003714: transcription corepressor activity	4.65E-03
31	GO:0005528: FK506 binding	4.65E-03
32	GO:0022891: substrate-specific transmembrane transporter activity	6.01E-03
33	GO:0003727: single-stranded RNA binding	6.36E-03
34	GO:0008017: microtubule binding	6.47E-03
35	GO:0010181: FMN binding	7.87E-03
36	GO:0048038: quinone binding	8.66E-03
37	GO:0005200: structural constituent of cytoskeleton	1.03E-02
38	GO:0016168: chlorophyll binding	1.17E-02
39	GO:0003993: acid phosphatase activity	1.65E-02
40	GO:0050661: NADP binding	1.76E-02
41	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.14E-02
42	GO:0016491: oxidoreductase activity	2.16E-02
43	GO:0051287: NAD binding	2.19E-02
44	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.37E-02
45	GO:0003690: double-stranded DNA binding	2.43E-02
46	GO:0015171: amino acid transmembrane transporter activity	2.55E-02
47	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.64E-02
48	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.27E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.34E-15
3	GO:0009535: chloroplast thylakoid membrane	2.91E-05
4	GO:0009543: chloroplast thylakoid lumen	4.81E-05
5	GO:0009570: chloroplast stroma	1.62E-04
6	GO:0030095: chloroplast photosystem II	1.86E-04
7	GO:0008274: gamma-tubulin ring complex	2.04E-04
8	GO:0042651: thylakoid membrane	2.91E-04
9	GO:0009654: photosystem II oxygen evolving complex	2.91E-04
10	GO:0000923: equatorial microtubule organizing center	4.92E-04
11	GO:0043231: intracellular membrane-bounded organelle	5.78E-04
12	GO:0019898: extrinsic component of membrane	6.01E-04
13	GO:0005874: microtubule	1.76E-03
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.10E-03
15	GO:0000922: spindle pole	2.10E-03
16	GO:0016324: apical plasma membrane	2.61E-03
17	GO:0009532: plastid stroma	5.32E-03
18	GO:0005871: kinesin complex	6.73E-03
19	GO:0009523: photosystem II	8.26E-03
20	GO:0030529: intracellular ribonucleoprotein complex	1.12E-02
21	GO:0005819: spindle	1.70E-02
22	GO:0031977: thylakoid lumen	1.81E-02
23	GO:0009941: chloroplast envelope	3.50E-02
24	GO:0009579: thylakoid	3.73E-02