co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G04790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0098586: cellular response to virus	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0046677: response to antibiotic	0.00E+00
5	GO:0015995: chlorophyll biosynthetic process	1.04E-05
6	GO:0009644: response to high light intensity	3.13E-05
7	GO:0016122: xanthophyll metabolic process	8.48E-05
8	GO:0046741: transport of virus in host, tissue to tissue	8.48E-05
9	GO:0009915: phloem sucrose loading	8.48E-05
10	GO:0042548: regulation of photosynthesis, light reaction	8.48E-05
11	GO:0000256: allantoin catabolic process	8.48E-05
12	GO:0050992: dimethylallyl diphosphate biosynthetic process	8.48E-05
13	GO:0010136: ureide catabolic process	1.47E-04
14	GO:0071484: cellular response to light intensity	2.18E-04
15	GO:0006145: purine nucleobase catabolic process	2.18E-04
16	GO:0043572: plastid fission	2.18E-04
17	GO:2001141: regulation of RNA biosynthetic process	2.18E-04
18	GO:0015994: chlorophyll metabolic process	2.95E-04
19	GO:0071483: cellular response to blue light	2.95E-04
20	GO:0018298: protein-chromophore linkage	3.66E-04
21	GO:0010117: photoprotection	3.77E-04
22	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	4.63E-04
23	GO:0010190: cytochrome b6f complex assembly	4.63E-04
24	GO:0009643: photosynthetic acclimation	4.63E-04
25	GO:0015979: photosynthesis	4.74E-04
26	GO:0034599: cellular response to oxidative stress	4.83E-04
27	GO:0071470: cellular response to osmotic stress	5.53E-04
28	GO:0010189: vitamin E biosynthetic process	5.53E-04
29	GO:0010114: response to red light	5.92E-04
30	GO:0009657: plastid organization	8.45E-04
31	GO:0006783: heme biosynthetic process	9.49E-04
32	GO:0006754: ATP biosynthetic process	9.49E-04
33	GO:0006779: porphyrin-containing compound biosynthetic process	1.06E-03
34	GO:0009624: response to nematode	1.10E-03
35	GO:0055114: oxidation-reduction process	1.13E-03
36	GO:0006782: protoporphyrinogen IX biosynthetic process	1.17E-03
37	GO:0009641: shade avoidance	1.17E-03
38	GO:0009773: photosynthetic electron transport in photosystem I	1.28E-03
39	GO:0006352: DNA-templated transcription, initiation	1.28E-03
40	GO:0005986: sucrose biosynthetic process	1.52E-03
41	GO:0009266: response to temperature stimulus	1.65E-03
42	GO:0010020: chloroplast fission	1.65E-03
43	GO:0010207: photosystem II assembly	1.65E-03
44	GO:0010223: secondary shoot formation	1.65E-03
45	GO:0007623: circadian rhythm	1.86E-03
46	GO:0006071: glycerol metabolic process	1.91E-03
47	GO:0006833: water transport	1.91E-03
48	GO:0051302: regulation of cell division	2.19E-03
49	GO:0019748: secondary metabolic process	2.48E-03
50	GO:0009658: chloroplast organization	2.85E-03
51	GO:0034220: ion transmembrane transport	3.09E-03
52	GO:0006662: glycerol ether metabolic process	3.25E-03
53	GO:0000302: response to reactive oxygen species	3.76E-03
54	GO:0045454: cell redox homeostasis	4.21E-03
55	GO:0010218: response to far red light	6.20E-03
56	GO:0006865: amino acid transport	6.61E-03
57	GO:0009853: photorespiration	6.82E-03
58	GO:0009637: response to blue light	6.82E-03
59	GO:0006631: fatty acid metabolic process	7.69E-03
60	GO:0009416: response to light stimulus	9.19E-03
61	GO:0031347: regulation of defense response	9.30E-03
62	GO:0006364: rRNA processing	1.00E-02
63	GO:0045893: positive regulation of transcription, DNA-templated	1.06E-02
64	GO:0006417: regulation of translation	1.08E-02
65	GO:0055085: transmembrane transport	1.17E-02
66	GO:0006396: RNA processing	1.31E-02
67	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.05E-02
68	GO:0042254: ribosome biogenesis	2.62E-02
69	GO:0006810: transport	2.75E-02
70	GO:0007049: cell cycle	2.79E-02
71	GO:0046686: response to cadmium ion	2.91E-02
72	GO:0006281: DNA repair	3.97E-02
73	GO:0006397: mRNA processing	4.10E-02

Rank	GO Term	Adjusted P value
1	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
2	GO:0009976: tocopherol cyclase activity	0.00E+00
3	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
4	GO:0035671: enone reductase activity	3.37E-05
5	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	3.37E-05
6	GO:0015173: aromatic amino acid transmembrane transporter activity	8.48E-05
7	GO:0008883: glutamyl-tRNA reductase activity	8.48E-05
8	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.47E-04
9	GO:0003913: DNA photolyase activity	1.47E-04
10	GO:0004848: ureidoglycolate hydrolase activity	1.47E-04
11	GO:0004148: dihydrolipoyl dehydrogenase activity	1.47E-04
12	GO:0050307: sucrose-phosphate phosphatase activity	1.47E-04
13	GO:0016853: isomerase activity	1.65E-04
14	GO:0015175: neutral amino acid transmembrane transporter activity	2.18E-04
15	GO:0016851: magnesium chelatase activity	2.18E-04
16	GO:0001053: plastid sigma factor activity	2.95E-04
17	GO:0016987: sigma factor activity	2.95E-04
18	GO:0051538: 3 iron, 4 sulfur cluster binding	3.77E-04
19	GO:0009881: photoreceptor activity	6.47E-04
20	GO:0008889: glycerophosphodiester phosphodiesterase activity	9.49E-04
21	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	9.49E-04
22	GO:0016887: ATPase activity	1.12E-03
23	GO:0022891: substrate-specific transmembrane transporter activity	2.63E-03
24	GO:0003727: single-stranded RNA binding	2.78E-03
25	GO:0047134: protein-disulfide reductase activity	2.94E-03
26	GO:0004791: thioredoxin-disulfide reductase activity	3.42E-03
27	GO:0010181: FMN binding	3.42E-03
28	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.10E-03
29	GO:0016791: phosphatase activity	4.28E-03
30	GO:0008237: metallopeptidase activity	4.46E-03
31	GO:0015250: water channel activity	4.83E-03
32	GO:0016168: chlorophyll binding	5.02E-03
33	GO:0004721: phosphoprotein phosphatase activity	5.40E-03
34	GO:0009055: electron carrier activity	5.56E-03
35	GO:0030145: manganese ion binding	6.40E-03
36	GO:0050897: cobalt ion binding	6.40E-03
37	GO:0050661: NADP binding	7.47E-03
38	GO:0004185: serine-type carboxypeptidase activity	8.14E-03
39	GO:0051537: 2 iron, 2 sulfur cluster binding	8.60E-03
40	GO:0043621: protein self-association	8.60E-03
41	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.00E-02
42	GO:0015171: amino acid transmembrane transporter activity	1.08E-02
43	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.15E-02
44	GO:0015035: protein disulfide oxidoreductase activity	1.31E-02
45	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.54E-02
46	GO:0016829: lyase activity	1.59E-02
47	GO:0005506: iron ion binding	1.84E-02
48	GO:0000287: magnesium ion binding	2.55E-02
49	GO:0050660: flavin adenine dinucleotide binding	2.87E-02
50	GO:0061630: ubiquitin protein ligase activity	3.12E-02
51	GO:0004722: protein serine/threonine phosphatase activity	3.66E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.52E-14
2	GO:0009535: chloroplast thylakoid membrane	1.60E-08
3	GO:0009534: chloroplast thylakoid	1.14E-06
4	GO:0042651: thylakoid membrane	7.90E-05
5	GO:0009570: chloroplast stroma	1.06E-04
6	GO:0010007: magnesium chelatase complex	1.47E-04
7	GO:0031977: thylakoid lumen	5.47E-04
8	GO:0005747: mitochondrial respiratory chain complex I	9.50E-04
9	GO:0009706: chloroplast inner membrane	1.10E-03
10	GO:0009941: chloroplast envelope	1.26E-03
11	GO:0010287: plastoglobule	1.29E-03
12	GO:0043234: protein complex	1.91E-03
13	GO:0009654: photosystem II oxygen evolving complex	2.19E-03
14	GO:0045271: respiratory chain complex I	2.19E-03
15	GO:0031969: chloroplast membrane	3.53E-03
16	GO:0019898: extrinsic component of membrane	3.59E-03
17	GO:0009523: photosystem II	3.59E-03
18	GO:0010319: stromule	4.46E-03
19	GO:0009707: chloroplast outer membrane	5.79E-03
20	GO:0031966: mitochondrial membrane	9.54E-03
21	GO:0005777: peroxisome	1.06E-02
22	GO:0009579: thylakoid	1.10E-02
23	GO:0009543: chloroplast thylakoid lumen	1.51E-02
24	GO:0005759: mitochondrial matrix	1.77E-02
25	GO:0005739: mitochondrion	1.90E-02
26	GO:0005887: integral component of plasma membrane	4.94E-02