GO Enrichment Analysis of Co-expressed Genes with
AT5G04490
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 2 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 3 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 4 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 5 | GO:1904966: positive regulation of vitamin E biosynthetic process | 0.00E+00 |
| 6 | GO:0008298: intracellular mRNA localization | 0.00E+00 |
| 7 | GO:1904964: positive regulation of phytol biosynthetic process | 0.00E+00 |
| 8 | GO:0042493: response to drug | 0.00E+00 |
| 9 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.84E-06 |
| 10 | GO:0015979: photosynthesis | 6.44E-06 |
| 11 | GO:0018298: protein-chromophore linkage | 7.95E-06 |
| 12 | GO:0006021: inositol biosynthetic process | 6.79E-05 |
| 13 | GO:0009765: photosynthesis, light harvesting | 6.79E-05 |
| 14 | GO:0016123: xanthophyll biosynthetic process | 1.07E-04 |
| 15 | GO:0046855: inositol phosphate dephosphorylation | 1.54E-04 |
| 16 | GO:0033388: putrescine biosynthetic process from arginine | 3.27E-04 |
| 17 | GO:0009443: pyridoxal 5'-phosphate salvage | 3.27E-04 |
| 18 | GO:0042371: vitamin K biosynthetic process | 3.27E-04 |
| 19 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 3.27E-04 |
| 20 | GO:0030091: protein repair | 3.44E-04 |
| 21 | GO:0048564: photosystem I assembly | 3.44E-04 |
| 22 | GO:0009657: plastid organization | 4.21E-04 |
| 23 | GO:0006435: threonyl-tRNA aminoacylation | 7.13E-04 |
| 24 | GO:0006741: NADP biosynthetic process | 7.13E-04 |
| 25 | GO:0080005: photosystem stoichiometry adjustment | 7.13E-04 |
| 26 | GO:0048314: embryo sac morphogenesis | 7.13E-04 |
| 27 | GO:0030187: melatonin biosynthetic process | 7.13E-04 |
| 28 | GO:0000256: allantoin catabolic process | 7.13E-04 |
| 29 | GO:0009446: putrescine biosynthetic process | 7.13E-04 |
| 30 | GO:0009773: photosynthetic electron transport in photosystem I | 8.05E-04 |
| 31 | GO:0006790: sulfur compound metabolic process | 9.18E-04 |
| 32 | GO:0055114: oxidation-reduction process | 1.14E-03 |
| 33 | GO:0009405: pathogenesis | 1.16E-03 |
| 34 | GO:0002230: positive regulation of defense response to virus by host | 1.16E-03 |
| 35 | GO:1901672: positive regulation of systemic acquired resistance | 1.16E-03 |
| 36 | GO:0010136: ureide catabolic process | 1.16E-03 |
| 37 | GO:0005977: glycogen metabolic process | 1.16E-03 |
| 38 | GO:0019674: NAD metabolic process | 1.16E-03 |
| 39 | GO:0019853: L-ascorbic acid biosynthetic process | 1.31E-03 |
| 40 | GO:0046854: phosphatidylinositol phosphorylation | 1.31E-03 |
| 41 | GO:0090307: mitotic spindle assembly | 1.66E-03 |
| 42 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.66E-03 |
| 43 | GO:0006145: purine nucleobase catabolic process | 1.66E-03 |
| 44 | GO:0051016: barbed-end actin filament capping | 1.66E-03 |
| 45 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.66E-03 |
| 46 | GO:0009650: UV protection | 1.66E-03 |
| 47 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 1.66E-03 |
| 48 | GO:0046739: transport of virus in multicellular host | 1.66E-03 |
| 49 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.66E-03 |
| 50 | GO:0019363: pyridine nucleotide biosynthetic process | 1.66E-03 |
| 51 | GO:0006020: inositol metabolic process | 1.66E-03 |
| 52 | GO:0007017: microtubule-based process | 1.78E-03 |
| 53 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.78E-03 |
| 54 | GO:0048511: rhythmic process | 1.95E-03 |
| 55 | GO:0009644: response to high light intensity | 2.09E-03 |
| 56 | GO:0022622: root system development | 2.23E-03 |
| 57 | GO:0031122: cytoplasmic microtubule organization | 2.23E-03 |
| 58 | GO:0010021: amylopectin biosynthetic process | 2.23E-03 |
| 59 | GO:0031935: regulation of chromatin silencing | 2.23E-03 |
| 60 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.84E-03 |
| 61 | GO:0016120: carotene biosynthetic process | 2.84E-03 |
| 62 | GO:0006656: phosphatidylcholine biosynthetic process | 2.84E-03 |
| 63 | GO:0016558: protein import into peroxisome matrix | 2.84E-03 |
| 64 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.84E-03 |
| 65 | GO:0006282: regulation of DNA repair | 2.84E-03 |
| 66 | GO:0000741: karyogamy | 3.51E-03 |
| 67 | GO:0042549: photosystem II stabilization | 3.51E-03 |
| 68 | GO:0009648: photoperiodism | 4.23E-03 |
| 69 | GO:0071470: cellular response to osmotic stress | 4.23E-03 |
| 70 | GO:0009793: embryo development ending in seed dormancy | 4.84E-03 |
| 71 | GO:1900056: negative regulation of leaf senescence | 4.99E-03 |
| 72 | GO:0009645: response to low light intensity stimulus | 4.99E-03 |
| 73 | GO:0032880: regulation of protein localization | 4.99E-03 |
| 74 | GO:0048528: post-embryonic root development | 4.99E-03 |
| 75 | GO:0009772: photosynthetic electron transport in photosystem II | 4.99E-03 |
| 76 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 5.80E-03 |
| 77 | GO:0009642: response to light intensity | 5.80E-03 |
| 78 | GO:0006605: protein targeting | 5.80E-03 |
| 79 | GO:0009231: riboflavin biosynthetic process | 5.80E-03 |
| 80 | GO:0015995: chlorophyll biosynthetic process | 6.71E-03 |
| 81 | GO:0006098: pentose-phosphate shunt | 7.54E-03 |
| 82 | GO:0009821: alkaloid biosynthetic process | 7.54E-03 |
| 83 | GO:0000373: Group II intron splicing | 7.54E-03 |
| 84 | GO:0032259: methylation | 8.08E-03 |
| 85 | GO:0010380: regulation of chlorophyll biosynthetic process | 8.48E-03 |
| 86 | GO:1900426: positive regulation of defense response to bacterium | 8.48E-03 |
| 87 | GO:0009638: phototropism | 8.48E-03 |
| 88 | GO:0055085: transmembrane transport | 9.02E-03 |
| 89 | GO:0009853: photorespiration | 9.44E-03 |
| 90 | GO:0006949: syncytium formation | 9.45E-03 |
| 91 | GO:0006415: translational termination | 1.05E-02 |
| 92 | GO:0010114: response to red light | 1.22E-02 |
| 93 | GO:2000012: regulation of auxin polar transport | 1.26E-02 |
| 94 | GO:0006807: nitrogen compound metabolic process | 1.26E-02 |
| 95 | GO:0010628: positive regulation of gene expression | 1.26E-02 |
| 96 | GO:0009725: response to hormone | 1.26E-02 |
| 97 | GO:0006094: gluconeogenesis | 1.26E-02 |
| 98 | GO:0009767: photosynthetic electron transport chain | 1.26E-02 |
| 99 | GO:0010207: photosystem II assembly | 1.37E-02 |
| 100 | GO:0010030: positive regulation of seed germination | 1.49E-02 |
| 101 | GO:0009658: chloroplast organization | 1.52E-02 |
| 102 | GO:0042753: positive regulation of circadian rhythm | 1.61E-02 |
| 103 | GO:0006863: purine nucleobase transport | 1.61E-02 |
| 104 | GO:0006833: water transport | 1.61E-02 |
| 105 | GO:0006364: rRNA processing | 1.65E-02 |
| 106 | GO:0009863: salicylic acid mediated signaling pathway | 1.73E-02 |
| 107 | GO:0080147: root hair cell development | 1.73E-02 |
| 108 | GO:0051321: meiotic cell cycle | 1.99E-02 |
| 109 | GO:0080167: response to karrikin | 2.00E-02 |
| 110 | GO:0080092: regulation of pollen tube growth | 2.12E-02 |
| 111 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 2.25E-02 |
| 112 | GO:0009411: response to UV | 2.25E-02 |
| 113 | GO:0006012: galactose metabolic process | 2.25E-02 |
| 114 | GO:0009553: embryo sac development | 2.28E-02 |
| 115 | GO:0006284: base-excision repair | 2.39E-02 |
| 116 | GO:0009306: protein secretion | 2.39E-02 |
| 117 | GO:0006396: RNA processing | 2.42E-02 |
| 118 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.53E-02 |
| 119 | GO:0008284: positive regulation of cell proliferation | 2.53E-02 |
| 120 | GO:0016117: carotenoid biosynthetic process | 2.53E-02 |
| 121 | GO:0042631: cellular response to water deprivation | 2.68E-02 |
| 122 | GO:0034220: ion transmembrane transport | 2.68E-02 |
| 123 | GO:0071472: cellular response to salt stress | 2.82E-02 |
| 124 | GO:0009958: positive gravitropism | 2.82E-02 |
| 125 | GO:0010197: polar nucleus fusion | 2.82E-02 |
| 126 | GO:0048868: pollen tube development | 2.82E-02 |
| 127 | GO:0015986: ATP synthesis coupled proton transport | 2.97E-02 |
| 128 | GO:0042752: regulation of circadian rhythm | 2.97E-02 |
| 129 | GO:0019252: starch biosynthetic process | 3.12E-02 |
| 130 | GO:0006281: DNA repair | 3.25E-02 |
| 131 | GO:0002229: defense response to oomycetes | 3.28E-02 |
| 132 | GO:0010193: response to ozone | 3.28E-02 |
| 133 | GO:0006635: fatty acid beta-oxidation | 3.28E-02 |
| 134 | GO:0031047: gene silencing by RNA | 3.44E-02 |
| 135 | GO:0016032: viral process | 3.44E-02 |
| 136 | GO:0009828: plant-type cell wall loosening | 3.76E-02 |
| 137 | GO:0006413: translational initiation | 3.78E-02 |
| 138 | GO:0005975: carbohydrate metabolic process | 4.04E-02 |
| 139 | GO:0051607: defense response to virus | 4.09E-02 |
| 140 | GO:0001666: response to hypoxia | 4.26E-02 |
| 141 | GO:0010027: thylakoid membrane organization | 4.26E-02 |
| 142 | GO:0009816: defense response to bacterium, incompatible interaction | 4.43E-02 |
| 143 | GO:0042128: nitrate assimilation | 4.61E-02 |
| 144 | GO:0010411: xyloglucan metabolic process | 4.78E-02 |
| 145 | GO:0016311: dephosphorylation | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 4 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 5 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 6 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 7 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 8 | GO:0050126: N-carbamoylputrescine amidase activity | 0.00E+00 |
| 9 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 10 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 11 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 12 | GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity | 0.00E+00 |
| 13 | GO:0004059: aralkylamine N-acetyltransferase activity | 0.00E+00 |
| 14 | GO:0016168: chlorophyll binding | 4.60E-06 |
| 15 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.84E-06 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.84E-06 |
| 17 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.84E-06 |
| 18 | GO:0043495: protein anchor | 6.79E-05 |
| 19 | GO:0004462: lactoylglutathione lyase activity | 1.54E-04 |
| 20 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.10E-04 |
| 21 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.10E-04 |
| 22 | GO:0022891: substrate-specific transmembrane transporter activity | 2.25E-04 |
| 23 | GO:0019899: enzyme binding | 2.73E-04 |
| 24 | GO:0047911: galacturan 1,4-alpha-galacturonidase activity | 3.27E-04 |
| 25 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 3.27E-04 |
| 26 | GO:0042736: NADH kinase activity | 3.27E-04 |
| 27 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 3.27E-04 |
| 28 | GO:0004451: isocitrate lyase activity | 3.27E-04 |
| 29 | GO:0004033: aldo-keto reductase (NADP) activity | 3.44E-04 |
| 30 | GO:0004829: threonine-tRNA ligase activity | 7.13E-04 |
| 31 | GO:0019172: glyoxalase III activity | 7.13E-04 |
| 32 | GO:0019156: isoamylase activity | 7.13E-04 |
| 33 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 7.13E-04 |
| 34 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 8.05E-04 |
| 35 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 1.16E-03 |
| 36 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.16E-03 |
| 37 | GO:0004751: ribose-5-phosphate isomerase activity | 1.16E-03 |
| 38 | GO:0070402: NADPH binding | 1.16E-03 |
| 39 | GO:0016491: oxidoreductase activity | 1.26E-03 |
| 40 | GO:0031409: pigment binding | 1.45E-03 |
| 41 | GO:0016149: translation release factor activity, codon specific | 1.66E-03 |
| 42 | GO:0008453: alanine-glyoxylate transaminase activity | 2.23E-03 |
| 43 | GO:0043015: gamma-tubulin binding | 2.23E-03 |
| 44 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 2.23E-03 |
| 45 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.23E-03 |
| 46 | GO:0051011: microtubule minus-end binding | 2.84E-03 |
| 47 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 2.84E-03 |
| 48 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.84E-03 |
| 49 | GO:0008080: N-acetyltransferase activity | 3.19E-03 |
| 50 | GO:0000293: ferric-chelate reductase activity | 3.51E-03 |
| 51 | GO:0042578: phosphoric ester hydrolase activity | 3.51E-03 |
| 52 | GO:0004556: alpha-amylase activity | 3.51E-03 |
| 53 | GO:0004332: fructose-bisphosphate aldolase activity | 3.51E-03 |
| 54 | GO:0048038: quinone binding | 3.94E-03 |
| 55 | GO:0015631: tubulin binding | 4.23E-03 |
| 56 | GO:0008195: phosphatidate phosphatase activity | 4.23E-03 |
| 57 | GO:0003951: NAD+ kinase activity | 6.65E-03 |
| 58 | GO:0003747: translation release factor activity | 7.54E-03 |
| 59 | GO:0045309: protein phosphorylated amino acid binding | 8.48E-03 |
| 60 | GO:0016844: strictosidine synthase activity | 8.48E-03 |
| 61 | GO:0003993: acid phosphatase activity | 9.88E-03 |
| 62 | GO:0019904: protein domain specific binding | 1.05E-02 |
| 63 | GO:0042802: identical protein binding | 1.18E-02 |
| 64 | GO:0008081: phosphoric diester hydrolase activity | 1.26E-02 |
| 65 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.32E-02 |
| 66 | GO:0005198: structural molecule activity | 1.37E-02 |
| 67 | GO:0008083: growth factor activity | 1.37E-02 |
| 68 | GO:0005528: FK506 binding | 1.73E-02 |
| 69 | GO:0031625: ubiquitin protein ligase binding | 1.83E-02 |
| 70 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.86E-02 |
| 71 | GO:0004176: ATP-dependent peptidase activity | 1.99E-02 |
| 72 | GO:0003727: single-stranded RNA binding | 2.39E-02 |
| 73 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.82E-02 |
| 74 | GO:0010181: FMN binding | 2.97E-02 |
| 75 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 3.02E-02 |
| 76 | GO:0004872: receptor activity | 3.12E-02 |
| 77 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 3.28E-02 |
| 78 | GO:0008483: transaminase activity | 3.92E-02 |
| 79 | GO:0005200: structural constituent of cytoskeleton | 3.92E-02 |
| 80 | GO:0015250: water channel activity | 4.26E-02 |
| 81 | GO:0003743: translation initiation factor activity | 4.72E-02 |
| 82 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 4.78E-02 |
| 83 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 4.96E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009349: riboflavin synthase complex | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 3.41E-31 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 4.31E-20 |
| 5 | GO:0009534: chloroplast thylakoid | 6.55E-08 |
| 6 | GO:0009941: chloroplast envelope | 1.06E-06 |
| 7 | GO:0009523: photosystem II | 1.22E-06 |
| 8 | GO:0010287: plastoglobule | 1.29E-06 |
| 9 | GO:0009570: chloroplast stroma | 2.02E-06 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 2.06E-05 |
| 11 | GO:0030286: dynein complex | 6.79E-05 |
| 12 | GO:0042651: thylakoid membrane | 1.52E-04 |
| 13 | GO:0031977: thylakoid lumen | 2.43E-04 |
| 14 | GO:0009782: photosystem I antenna complex | 3.27E-04 |
| 15 | GO:0009538: photosystem I reaction center | 3.44E-04 |
| 16 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 5.07E-04 |
| 17 | GO:0009579: thylakoid | 6.67E-04 |
| 18 | GO:0080085: signal recognition particle, chloroplast targeting | 7.13E-04 |
| 19 | GO:0008274: gamma-tubulin ring complex | 7.13E-04 |
| 20 | GO:0008290: F-actin capping protein complex | 7.13E-04 |
| 21 | GO:0030095: chloroplast photosystem II | 1.17E-03 |
| 22 | GO:0000923: equatorial microtubule organizing center | 1.66E-03 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 1.78E-03 |
| 24 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 3.51E-03 |
| 25 | GO:0019898: extrinsic component of membrane | 3.68E-03 |
| 26 | GO:0031969: chloroplast membrane | 4.77E-03 |
| 27 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 6.65E-03 |
| 28 | GO:0042644: chloroplast nucleoid | 7.54E-03 |
| 29 | GO:0000922: spindle pole | 7.54E-03 |
| 30 | GO:0016324: apical plasma membrane | 9.45E-03 |
| 31 | GO:0048471: perinuclear region of cytoplasm | 1.05E-02 |
| 32 | GO:0009508: plastid chromosome | 1.26E-02 |
| 33 | GO:0030076: light-harvesting complex | 1.49E-02 |
| 34 | GO:0005875: microtubule associated complex | 1.61E-02 |
| 35 | GO:0045271: respiratory chain complex I | 1.86E-02 |
| 36 | GO:0005747: mitochondrial respiratory chain complex I | 2.02E-02 |
| 37 | GO:0009706: chloroplast inner membrane | 2.35E-02 |
| 38 | GO:0009505: plant-type cell wall | 2.94E-02 |
| 39 | GO:0009522: photosystem I | 2.97E-02 |
| 40 | GO:0009295: nucleoid | 3.92E-02 |
| 41 | GO:0005778: peroxisomal membrane | 3.92E-02 |
| 42 | GO:0010319: stromule | 3.92E-02 |