GO Enrichment Analysis of Co-expressed Genes with
AT5G03740
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 3 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 4 | GO:0090069: regulation of ribosome biogenesis | 0.00E+00 |
| 5 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 6 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 7 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 8 | GO:0006364: rRNA processing | 3.54E-11 |
| 9 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.83E-08 |
| 10 | GO:0042273: ribosomal large subunit biogenesis | 3.69E-06 |
| 11 | GO:0009553: embryo sac development | 1.08E-05 |
| 12 | GO:0000028: ribosomal small subunit assembly | 2.51E-05 |
| 13 | GO:0031120: snRNA pseudouridine synthesis | 5.94E-05 |
| 14 | GO:0031118: rRNA pseudouridine synthesis | 5.94E-05 |
| 15 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 5.94E-05 |
| 16 | GO:0010162: seed dormancy process | 5.94E-05 |
| 17 | GO:2000232: regulation of rRNA processing | 5.94E-05 |
| 18 | GO:0043985: histone H4-R3 methylation | 5.94E-05 |
| 19 | GO:0045041: protein import into mitochondrial intermembrane space | 1.44E-04 |
| 20 | GO:0034470: ncRNA processing | 1.44E-04 |
| 21 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.58E-04 |
| 22 | GO:0007005: mitochondrion organization | 2.14E-04 |
| 23 | GO:0009294: DNA mediated transformation | 2.34E-04 |
| 24 | GO:0010197: polar nucleus fusion | 3.24E-04 |
| 25 | GO:0007276: gamete generation | 3.57E-04 |
| 26 | GO:0009855: determination of bilateral symmetry | 3.57E-04 |
| 27 | GO:0051131: chaperone-mediated protein complex assembly | 3.57E-04 |
| 28 | GO:0000460: maturation of 5.8S rRNA | 4.78E-04 |
| 29 | GO:0006479: protein methylation | 4.78E-04 |
| 30 | GO:0046345: abscisic acid catabolic process | 4.78E-04 |
| 31 | GO:0042274: ribosomal small subunit biogenesis | 4.78E-04 |
| 32 | GO:0000380: alternative mRNA splicing, via spliceosome | 6.05E-04 |
| 33 | GO:0010375: stomatal complex patterning | 6.05E-04 |
| 34 | GO:0000470: maturation of LSU-rRNA | 7.40E-04 |
| 35 | GO:0000741: karyogamy | 7.40E-04 |
| 36 | GO:0006458: 'de novo' protein folding | 8.82E-04 |
| 37 | GO:0042026: protein refolding | 8.82E-04 |
| 38 | GO:0010374: stomatal complex development | 1.03E-03 |
| 39 | GO:0080186: developmental vegetative growth | 1.03E-03 |
| 40 | GO:0000387: spliceosomal snRNP assembly | 1.69E-03 |
| 41 | GO:0010582: floral meristem determinacy | 2.27E-03 |
| 42 | GO:0006108: malate metabolic process | 2.47E-03 |
| 43 | GO:0010030: positive regulation of seed germination | 2.89E-03 |
| 44 | GO:0009735: response to cytokinin | 2.98E-03 |
| 45 | GO:0051302: regulation of cell division | 3.57E-03 |
| 46 | GO:0061077: chaperone-mediated protein folding | 3.81E-03 |
| 47 | GO:0009693: ethylene biosynthetic process | 4.30E-03 |
| 48 | GO:0009561: megagametogenesis | 4.55E-03 |
| 49 | GO:0070417: cellular response to cold | 4.81E-03 |
| 50 | GO:0010501: RNA secondary structure unwinding | 5.07E-03 |
| 51 | GO:0009960: endosperm development | 5.34E-03 |
| 52 | GO:0006414: translational elongation | 5.53E-03 |
| 53 | GO:0042254: ribosome biogenesis | 5.98E-03 |
| 54 | GO:0016049: cell growth | 9.25E-03 |
| 55 | GO:0008219: cell death | 9.59E-03 |
| 56 | GO:0032259: methylation | 1.03E-02 |
| 57 | GO:0048527: lateral root development | 1.06E-02 |
| 58 | GO:0006099: tricarboxylic acid cycle | 1.17E-02 |
| 59 | GO:0046686: response to cadmium ion | 1.43E-02 |
| 60 | GO:0000154: rRNA modification | 1.47E-02 |
| 61 | GO:0016569: covalent chromatin modification | 2.06E-02 |
| 62 | GO:0006396: RNA processing | 2.19E-02 |
| 63 | GO:0009793: embryo development ending in seed dormancy | 2.36E-02 |
| 64 | GO:0009790: embryo development | 2.81E-02 |
| 65 | GO:0010150: leaf senescence | 3.17E-02 |
| 66 | GO:0009451: RNA modification | 3.22E-02 |
| 67 | GO:0007166: cell surface receptor signaling pathway | 3.49E-02 |
| 68 | GO:0009723: response to ethylene | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 2 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 3 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 4 | GO:0000166: nucleotide binding | 6.45E-13 |
| 5 | GO:0003723: RNA binding | 1.16E-08 |
| 6 | GO:0043021: ribonucleoprotein complex binding | 2.06E-07 |
| 7 | GO:0070181: small ribosomal subunit rRNA binding | 7.95E-07 |
| 8 | GO:0030515: snoRNA binding | 1.90E-05 |
| 9 | GO:0003746: translation elongation factor activity | 5.79E-05 |
| 10 | GO:0008746: NAD(P)+ transhydrogenase activity | 5.94E-05 |
| 11 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.31E-04 |
| 12 | GO:0004407: histone deacetylase activity | 1.58E-04 |
| 13 | GO:0008026: ATP-dependent helicase activity | 2.34E-04 |
| 14 | GO:0048027: mRNA 5'-UTR binding | 3.57E-04 |
| 15 | GO:0008168: methyltransferase activity | 7.31E-04 |
| 16 | GO:0016615: malate dehydrogenase activity | 7.40E-04 |
| 17 | GO:0030060: L-malate dehydrogenase activity | 8.82E-04 |
| 18 | GO:0001055: RNA polymerase II activity | 1.69E-03 |
| 19 | GO:0001054: RNA polymerase I activity | 2.07E-03 |
| 20 | GO:0044183: protein binding involved in protein folding | 2.07E-03 |
| 21 | GO:0051082: unfolded protein binding | 2.22E-03 |
| 22 | GO:0001056: RNA polymerase III activity | 2.27E-03 |
| 23 | GO:0009982: pseudouridine synthase activity | 2.47E-03 |
| 24 | GO:0003676: nucleic acid binding | 3.70E-03 |
| 25 | GO:0004527: exonuclease activity | 5.34E-03 |
| 26 | GO:0003713: transcription coactivator activity | 5.34E-03 |
| 27 | GO:0004004: ATP-dependent RNA helicase activity | 8.92E-03 |
| 28 | GO:0050897: cobalt ion binding | 1.06E-02 |
| 29 | GO:0003924: GTPase activity | 1.07E-02 |
| 30 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.17E-02 |
| 31 | GO:0003729: mRNA binding | 1.35E-02 |
| 32 | GO:0003735: structural constituent of ribosome | 1.95E-02 |
| 33 | GO:0019843: rRNA binding | 2.52E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034455: t-UTP complex | 0.00E+00 |
| 2 | GO:0070545: PeBoW complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 2.09E-26 |
| 4 | GO:0032040: small-subunit processome | 6.33E-09 |
| 5 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 7.07E-09 |
| 6 | GO:0030687: preribosome, large subunit precursor | 9.61E-08 |
| 7 | GO:0005634: nucleus | 6.58E-07 |
| 8 | GO:0005834: heterotrimeric G-protein complex | 8.94E-06 |
| 9 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 5.94E-05 |
| 10 | GO:0005654: nucleoplasm | 2.82E-04 |
| 11 | GO:0031429: box H/ACA snoRNP complex | 3.57E-04 |
| 12 | GO:0005759: mitochondrial matrix | 3.93E-04 |
| 13 | GO:0022627: cytosolic small ribosomal subunit | 6.32E-04 |
| 14 | GO:0031428: box C/D snoRNP complex | 7.40E-04 |
| 15 | GO:0005618: cell wall | 8.88E-04 |
| 16 | GO:0034399: nuclear periphery | 1.18E-03 |
| 17 | GO:0005763: mitochondrial small ribosomal subunit | 1.52E-03 |
| 18 | GO:0005736: DNA-directed RNA polymerase I complex | 1.52E-03 |
| 19 | GO:0005666: DNA-directed RNA polymerase III complex | 1.69E-03 |
| 20 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.88E-03 |
| 21 | GO:0031307: integral component of mitochondrial outer membrane | 2.27E-03 |
| 22 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.27E-03 |
| 23 | GO:0005774: vacuolar membrane | 2.74E-03 |
| 24 | GO:0000419: DNA-directed RNA polymerase V complex | 3.11E-03 |
| 25 | GO:0009532: plastid stroma | 3.81E-03 |
| 26 | GO:0010319: stromule | 7.35E-03 |
| 27 | GO:0030529: intracellular ribonucleoprotein complex | 7.97E-03 |
| 28 | GO:0015934: large ribosomal subunit | 1.06E-02 |
| 29 | GO:0005829: cytosol | 1.33E-02 |
| 30 | GO:0005747: mitochondrial respiratory chain complex I | 1.93E-02 |
| 31 | GO:0005622: intracellular | 3.39E-02 |