co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
2	GO:0042362: fat-soluble vitamin biosynthetic process	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:0001881: receptor recycling	0.00E+00
5	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
6	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
7	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
8	GO:0006412: translation	2.33E-18
9	GO:0042254: ribosome biogenesis	2.18E-13
10	GO:0006511: ubiquitin-dependent protein catabolic process	7.34E-11
11	GO:0051603: proteolysis involved in cellular protein catabolic process	2.39E-05
12	GO:1902626: assembly of large subunit precursor of preribosome	3.59E-05
13	GO:0010387: COP9 signalosome assembly	1.34E-04
14	GO:0006914: autophagy	1.56E-04
15	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.05E-04
16	GO:0043248: proteasome assembly	2.90E-04
17	GO:0000027: ribosomal large subunit assembly	3.03E-04
18	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	4.99E-04
19	GO:0000338: protein deneddylation	4.99E-04
20	GO:0000028: ribosomal small subunit assembly	6.22E-04
21	GO:0031540: regulation of anthocyanin biosynthetic process	6.22E-04
22	GO:0048589: developmental growth	9.06E-04
23	GO:0009245: lipid A biosynthetic process	9.06E-04
24	GO:0006212: uracil catabolic process	1.05E-03
25	GO:0019483: beta-alanine biosynthetic process	1.05E-03
26	GO:0015786: UDP-glucose transport	1.05E-03
27	GO:0051788: response to misfolded protein	1.05E-03
28	GO:0045905: positive regulation of translational termination	1.05E-03
29	GO:0043132: NAD transport	1.05E-03
30	GO:0045901: positive regulation of translational elongation	1.05E-03
31	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	1.05E-03
32	GO:0046939: nucleotide phosphorylation	1.05E-03
33	GO:0006452: translational frameshifting	1.05E-03
34	GO:0009915: phloem sucrose loading	1.05E-03
35	GO:0006672: ceramide metabolic process	1.05E-03
36	GO:0045454: cell redox homeostasis	1.17E-03
37	GO:0016925: protein sumoylation	1.64E-03
38	GO:0008333: endosome to lysosome transport	1.72E-03
39	GO:0002181: cytoplasmic translation	1.72E-03
40	GO:0044375: regulation of peroxisome size	1.72E-03
41	GO:0045793: positive regulation of cell size	1.72E-03
42	GO:0015783: GDP-fucose transport	1.72E-03
43	GO:0034227: tRNA thio-modification	1.72E-03
44	GO:0006807: nitrogen compound metabolic process	1.87E-03
45	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.50E-03
46	GO:1901332: negative regulation of lateral root development	2.50E-03
47	GO:0009743: response to carbohydrate	2.50E-03
48	GO:0015858: nucleoside transport	2.50E-03
49	GO:0006168: adenine salvage	2.50E-03
50	GO:0071786: endoplasmic reticulum tubular network organization	2.50E-03
51	GO:0006882: cellular zinc ion homeostasis	2.50E-03
52	GO:0001676: long-chain fatty acid metabolic process	2.50E-03
53	GO:0046513: ceramide biosynthetic process	2.50E-03
54	GO:0032877: positive regulation of DNA endoreduplication	2.50E-03
55	GO:0046836: glycolipid transport	2.50E-03
56	GO:0006166: purine ribonucleoside salvage	2.50E-03
57	GO:0006107: oxaloacetate metabolic process	2.50E-03
58	GO:0072334: UDP-galactose transmembrane transport	2.50E-03
59	GO:0009647: skotomorphogenesis	2.50E-03
60	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	2.50E-03
61	GO:0009853: photorespiration	2.95E-03
62	GO:0051781: positive regulation of cell division	3.36E-03
63	GO:0048442: sepal development	3.36E-03
64	GO:0010363: regulation of plant-type hypersensitive response	3.36E-03
65	GO:0015992: proton transport	3.55E-03
66	GO:0010431: seed maturation	3.55E-03
67	GO:0061077: chaperone-mediated protein folding	3.55E-03
68	GO:0016226: iron-sulfur cluster assembly	3.89E-03
69	GO:0010117: photoprotection	4.31E-03
70	GO:0007029: endoplasmic reticulum organization	4.31E-03
71	GO:1902183: regulation of shoot apical meristem development	4.31E-03
72	GO:0044209: AMP salvage	4.31E-03
73	GO:0045116: protein neddylation	4.31E-03
74	GO:0032957: inositol trisphosphate metabolic process	4.31E-03
75	GO:0009735: response to cytokinin	4.64E-03
76	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.29E-03
77	GO:0006574: valine catabolic process	5.34E-03
78	GO:0001731: formation of translation preinitiation complex	5.34E-03
79	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	5.34E-03
80	GO:0006555: methionine metabolic process	5.34E-03
81	GO:0015991: ATP hydrolysis coupled proton transport	5.42E-03
82	GO:0006662: glycerol ether metabolic process	5.84E-03
83	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	6.44E-03
84	GO:0010189: vitamin E biosynthetic process	6.44E-03
85	GO:0009554: megasporogenesis	6.44E-03
86	GO:0009955: adaxial/abaxial pattern specification	6.44E-03
87	GO:0019509: L-methionine salvage from methylthioadenosine	6.44E-03
88	GO:1901001: negative regulation of response to salt stress	6.44E-03
89	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	6.44E-03
90	GO:0048528: post-embryonic root development	7.62E-03
91	GO:1900056: negative regulation of leaf senescence	7.62E-03
92	GO:0046686: response to cadmium ion	8.05E-03
93	GO:0030163: protein catabolic process	8.24E-03
94	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	8.87E-03
95	GO:0009642: response to light intensity	8.87E-03
96	GO:0009690: cytokinin metabolic process	8.87E-03
97	GO:0006506: GPI anchor biosynthetic process	8.87E-03
98	GO:0006102: isocitrate metabolic process	8.87E-03
99	GO:0010100: negative regulation of photomorphogenesis	1.02E-02
100	GO:0007389: pattern specification process	1.02E-02
101	GO:0043562: cellular response to nitrogen levels	1.02E-02
102	GO:0010093: specification of floral organ identity	1.02E-02
103	GO:0022900: electron transport chain	1.02E-02
104	GO:0010206: photosystem II repair	1.16E-02
105	GO:0015780: nucleotide-sugar transport	1.16E-02
106	GO:0098656: anion transmembrane transport	1.16E-02
107	GO:0046685: response to arsenic-containing substance	1.16E-02
108	GO:0071577: zinc II ion transmembrane transport	1.30E-02
109	GO:0042761: very long-chain fatty acid biosynthetic process	1.30E-02
110	GO:0015031: protein transport	1.33E-02
111	GO:0048441: petal development	1.45E-02
112	GO:0000103: sulfate assimilation	1.45E-02
113	GO:0006032: chitin catabolic process	1.45E-02
114	GO:0043069: negative regulation of programmed cell death	1.45E-02
115	GO:0048829: root cap development	1.45E-02
116	GO:0010043: response to zinc ion	1.59E-02
117	GO:0015770: sucrose transport	1.61E-02
118	GO:0000272: polysaccharide catabolic process	1.61E-02
119	GO:0008361: regulation of cell size	1.78E-02
120	GO:0006820: anion transport	1.78E-02
121	GO:0034599: cellular response to oxidative stress	1.82E-02
122	GO:0006099: tricarboxylic acid cycle	1.82E-02
123	GO:0006626: protein targeting to mitochondrion	1.94E-02
124	GO:0010102: lateral root morphogenesis	1.94E-02
125	GO:0006108: malate metabolic process	1.94E-02
126	GO:0006839: mitochondrial transport	1.99E-02
127	GO:0007034: vacuolar transport	2.12E-02
128	GO:0006446: regulation of translational initiation	2.12E-02
129	GO:0009266: response to temperature stimulus	2.12E-02
130	GO:0048467: gynoecium development	2.12E-02
131	GO:0009640: photomorphogenesis	2.25E-02
132	GO:0010039: response to iron ion	2.30E-02
133	GO:0006636: unsaturated fatty acid biosynthetic process	2.48E-02
134	GO:0055114: oxidation-reduction process	2.64E-02
135	GO:0006406: mRNA export from nucleus	2.67E-02
136	GO:0006289: nucleotide-excision repair	2.67E-02
137	GO:0006487: protein N-linked glycosylation	2.67E-02
138	GO:0009116: nucleoside metabolic process	2.67E-02
139	GO:0031347: regulation of defense response	2.73E-02
140	GO:0051302: regulation of cell division	2.87E-02
141	GO:0009585: red, far-red light phototransduction	3.04E-02
142	GO:0051260: protein homooligomerization	3.07E-02
143	GO:0048511: rhythmic process	3.07E-02
144	GO:0007005: mitochondrion organization	3.27E-02
145	GO:0019722: calcium-mediated signaling	3.70E-02
146	GO:0010089: xylem development	3.70E-02
147	GO:0010584: pollen exine formation	3.70E-02
148	GO:0042147: retrograde transport, endosome to Golgi	3.91E-02
149	GO:0034220: ion transmembrane transport	4.14E-02
150	GO:0000413: protein peptidyl-prolyl isomerization	4.14E-02
151	GO:0010118: stomatal movement	4.14E-02
152	GO:0042631: cellular response to water deprivation	4.14E-02
153	GO:0010154: fruit development	4.36E-02
154	GO:0006810: transport	4.39E-02
155	GO:0048825: cotyledon development	4.83E-02
156	GO:0006623: protein targeting to vacuole	4.83E-02
157	GO:0000398: mRNA splicing, via spliceosome	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
3	GO:0010176: homogentisate phytyltransferase activity	0.00E+00
4	GO:0044610: FMN transmembrane transporter activity	0.00E+00
5	GO:0003796: lysozyme activity	0.00E+00
6	GO:0008752: FMN reductase activity	0.00E+00
7	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
8	GO:0016881: acid-amino acid ligase activity	0.00E+00
9	GO:0003837: beta-ureidopropionase activity	0.00E+00
10	GO:0003735: structural constituent of ribosome	4.10E-27
11	GO:0004298: threonine-type endopeptidase activity	9.24E-20
12	GO:0008233: peptidase activity	1.33E-11
13	GO:0004129: cytochrome-c oxidase activity	1.08E-04
14	GO:0008794: arsenate reductase (glutaredoxin) activity	1.08E-04
15	GO:0003729: mRNA binding	1.08E-04
16	GO:0031386: protein tag	2.05E-04
17	GO:0031177: phosphopantetheine binding	2.90E-04
18	GO:0000035: acyl binding	3.89E-04
19	GO:0005347: ATP transmembrane transporter activity	3.89E-04
20	GO:0015035: protein disulfide oxidoreductase activity	4.00E-04
21	GO:0015230: FAD transmembrane transporter activity	4.90E-04
22	GO:0019786: Atg8-specific protease activity	4.90E-04
23	GO:0019843: rRNA binding	5.72E-04
24	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	6.22E-04
25	GO:0008137: NADH dehydrogenase (ubiquinone) activity	9.76E-04
26	GO:0008805: carbon-monoxide oxygenase activity	1.05E-03
27	GO:0019779: Atg8 activating enzyme activity	1.05E-03
28	GO:0008517: folic acid transporter activity	1.05E-03
29	GO:0015228: coenzyme A transmembrane transporter activity	1.05E-03
30	GO:0050291: sphingosine N-acyltransferase activity	1.05E-03
31	GO:0019781: NEDD8 activating enzyme activity	1.05E-03
32	GO:0004750: ribulose-phosphate 3-epimerase activity	1.05E-03
33	GO:0051724: NAD transporter activity	1.05E-03
34	GO:0018708: thiol S-methyltransferase activity	1.05E-03
35	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.72E-03
36	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	1.72E-03
37	GO:0005457: GDP-fucose transmembrane transporter activity	1.72E-03
38	GO:0047325: inositol tetrakisphosphate 1-kinase activity	1.72E-03
39	GO:0008430: selenium binding	1.72E-03
40	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.72E-03
41	GO:0005047: signal recognition particle binding	1.72E-03
42	GO:0003999: adenine phosphoribosyltransferase activity	2.50E-03
43	GO:0005460: UDP-glucose transmembrane transporter activity	2.50E-03
44	GO:0004449: isocitrate dehydrogenase (NAD+) activity	2.50E-03
45	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.50E-03
46	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	2.50E-03
47	GO:0035198: miRNA binding	2.50E-03
48	GO:0017089: glycolipid transporter activity	2.50E-03
49	GO:0019201: nucleotide kinase activity	2.50E-03
50	GO:0005528: FK506 binding	2.93E-03
51	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.36E-03
52	GO:0004576: oligosaccharyl transferase activity	3.36E-03
53	GO:0019776: Atg8 ligase activity	3.36E-03
54	GO:0004659: prenyltransferase activity	3.36E-03
55	GO:0010011: auxin binding	3.36E-03
56	GO:0051861: glycolipid binding	3.36E-03
57	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	3.36E-03
58	GO:0070628: proteasome binding	3.36E-03
59	GO:0008198: ferrous iron binding	4.31E-03
60	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	4.31E-03
61	GO:0080122: AMP transmembrane transporter activity	4.31E-03
62	GO:0004040: amidase activity	4.31E-03
63	GO:0005459: UDP-galactose transmembrane transporter activity	4.31E-03
64	GO:0008641: small protein activating enzyme activity	4.31E-03
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.98E-03
66	GO:0047134: protein-disulfide reductase activity	5.01E-03
67	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	5.34E-03
68	GO:0031593: polyubiquitin binding	5.34E-03
69	GO:0004791: thioredoxin-disulfide reductase activity	6.28E-03
70	GO:0102391: decanoate--CoA ligase activity	6.44E-03
71	GO:0004656: procollagen-proline 4-dioxygenase activity	6.44E-03
72	GO:0015217: ADP transmembrane transporter activity	6.44E-03
73	GO:0051920: peroxiredoxin activity	6.44E-03
74	GO:0004017: adenylate kinase activity	6.44E-03
75	GO:0004467: long-chain fatty acid-CoA ligase activity	7.62E-03
76	GO:0005338: nucleotide-sugar transmembrane transporter activity	7.62E-03
77	GO:0042162: telomeric DNA binding	7.62E-03
78	GO:0008121: ubiquinol-cytochrome-c reductase activity	7.62E-03
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.24E-03
80	GO:0043022: ribosome binding	8.87E-03
81	GO:0015288: porin activity	8.87E-03
82	GO:0016209: antioxidant activity	8.87E-03
83	GO:0015078: hydrogen ion transmembrane transporter activity	1.02E-02
84	GO:0008308: voltage-gated anion channel activity	1.02E-02
85	GO:0000989: transcription factor activity, transcription factor binding	1.16E-02
86	GO:0004568: chitinase activity	1.45E-02
87	GO:0050897: cobalt ion binding	1.59E-02
88	GO:0008515: sucrose transmembrane transporter activity	1.61E-02
89	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.61E-02
90	GO:0008327: methyl-CpG binding	1.61E-02
91	GO:0008559: xenobiotic-transporting ATPase activity	1.61E-02
92	GO:0003746: translation elongation factor activity	1.74E-02
93	GO:0003697: single-stranded DNA binding	1.74E-02
94	GO:0008017: microtubule binding	2.00E-02
95	GO:0004364: glutathione transferase activity	2.16E-02
96	GO:0003712: transcription cofactor activity	2.30E-02
97	GO:0003743: translation initiation factor activity	2.30E-02
98	GO:0051119: sugar transmembrane transporter activity	2.30E-02
99	GO:0009055: electron carrier activity	2.40E-02
100	GO:0005198: structural molecule activity	2.53E-02
101	GO:0031418: L-ascorbic acid binding	2.67E-02
102	GO:0005385: zinc ion transmembrane transporter activity	2.67E-02
103	GO:0043130: ubiquitin binding	2.67E-02
104	GO:0004601: peroxidase activity	3.27E-02
105	GO:0008514: organic anion transmembrane transporter activity	3.70E-02
106	GO:0022857: transmembrane transporter activity	4.06E-02
107	GO:0003713: transcription coactivator activity	4.36E-02
108	GO:0046873: metal ion transmembrane transporter activity	4.36E-02
109	GO:0008080: N-acetyltransferase activity	4.36E-02
110	GO:0010181: FMN binding	4.59E-02
111	GO:0004872: receptor activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0005840: ribosome	7.59E-21
3	GO:0005839: proteasome core complex	9.24E-20
4	GO:0000502: proteasome complex	1.49E-19
5	GO:0022625: cytosolic large ribosomal subunit	4.56E-19
6	GO:0022626: cytosolic ribosome	8.57E-18
7	GO:0022627: cytosolic small ribosomal subunit	2.15E-11
8	GO:0005829: cytosol	3.18E-11
9	GO:0005774: vacuolar membrane	2.33E-09
10	GO:0005737: cytoplasm	7.94E-09
11	GO:0019773: proteasome core complex, alpha-subunit complex	8.35E-09
12	GO:0000421: autophagosome membrane	4.40E-07
13	GO:0005773: vacuole	1.92E-06
14	GO:0031410: cytoplasmic vesicle	3.33E-05
15	GO:0046861: glyoxysomal membrane	3.59E-05
16	GO:0005747: mitochondrial respiratory chain complex I	3.73E-05
17	GO:0015934: large ribosomal subunit	4.76E-05
18	GO:0005783: endoplasmic reticulum	1.21E-04
19	GO:0005788: endoplasmic reticulum lumen	2.33E-04
20	GO:0005758: mitochondrial intermembrane space	3.03E-04
21	GO:0045271: respiratory chain complex I	3.47E-04
22	GO:0070469: respiratory chain	3.47E-04
23	GO:0019774: proteasome core complex, beta-subunit complex	4.90E-04
24	GO:0009510: plasmodesmatal desmotubule	4.90E-04
25	GO:0005730: nucleolus	5.28E-04
26	GO:0009514: glyoxysome	7.58E-04
27	GO:0008180: COP9 signalosome	9.06E-04
28	GO:0005697: telomerase holoenzyme complex	1.05E-03
29	GO:0016020: membrane	1.29E-03
30	GO:0008541: proteasome regulatory particle, lid subcomplex	1.43E-03
31	GO:0005750: mitochondrial respiratory chain complex III	2.11E-03
32	GO:0005732: small nucleolar ribonucleoprotein complex	2.20E-03
33	GO:0033180: proton-transporting V-type ATPase, V1 domain	2.50E-03
34	GO:1990726: Lsm1-7-Pat1 complex	2.50E-03
35	GO:0071782: endoplasmic reticulum tubular network	2.50E-03
36	GO:0005775: vacuolar lumen	2.50E-03
37	GO:0009526: plastid envelope	3.36E-03
38	GO:0033179: proton-transporting V-type ATPase, V0 domain	3.36E-03
39	GO:0005776: autophagosome	3.36E-03
40	GO:0016471: vacuolar proton-transporting V-type ATPase complex	3.36E-03
41	GO:0008250: oligosaccharyltransferase complex	4.31E-03
42	GO:0005746: mitochondrial respiratory chain	4.31E-03
43	GO:0005771: multivesicular body	5.34E-03
44	GO:0030904: retromer complex	5.34E-03
45	GO:0016282: eukaryotic 43S preinitiation complex	5.34E-03
46	GO:0031966: mitochondrial membrane	5.47E-03
47	GO:0005794: Golgi apparatus	6.32E-03
48	GO:0033290: eukaryotic 48S preinitiation complex	6.44E-03
49	GO:0009506: plasmodesma	7.57E-03
50	GO:0009507: chloroplast	7.57E-03
51	GO:0005789: endoplasmic reticulum membrane	7.70E-03
52	GO:0045273: respiratory chain complex II	8.87E-03
53	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	8.87E-03
54	GO:0005688: U6 snRNP	8.87E-03
55	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	8.87E-03
56	GO:0005779: integral component of peroxisomal membrane	1.02E-02
57	GO:0046930: pore complex	1.02E-02
58	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.02E-02
59	GO:0005874: microtubule	1.14E-02
60	GO:0031090: organelle membrane	1.16E-02
61	GO:0005763: mitochondrial small ribosomal subunit	1.16E-02
62	GO:0071011: precatalytic spliceosome	1.30E-02
63	GO:0005618: cell wall	1.43E-02
64	GO:0005740: mitochondrial envelope	1.45E-02
65	GO:0071013: catalytic step 2 spliceosome	1.61E-02
66	GO:0005759: mitochondrial matrix	1.68E-02
67	GO:0005665: DNA-directed RNA polymerase II, core complex	1.78E-02
68	GO:0009508: plastid chromosome	1.94E-02
69	GO:0000419: DNA-directed RNA polymerase V complex	2.48E-02
70	GO:0042651: thylakoid membrane	2.87E-02
71	GO:0015935: small ribosomal subunit	3.07E-02
72	GO:0005741: mitochondrial outer membrane	3.07E-02
73	GO:0009504: cell plate	4.83E-02