co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017012: protein-phytochromobilin linkage	0.00E+00
2	GO:0071000: response to magnetism	0.00E+00
3	GO:0010202: response to low fluence red light stimulus	0.00E+00
4	GO:0009583: detection of light stimulus	0.00E+00
5	GO:0046294: formaldehyde catabolic process	0.00E+00
6	GO:0010617: circadian regulation of calcium ion oscillation	4.16E-07
7	GO:0010343: singlet oxygen-mediated programmed cell death	4.16E-07
8	GO:0009649: entrainment of circadian clock	7.19E-06
9	GO:0046283: anthocyanin-containing compound metabolic process	1.20E-05
10	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.61E-05
11	GO:0072387: flavin adenine dinucleotide metabolic process	8.78E-05
12	GO:0006567: threonine catabolic process	8.78E-05
13	GO:1902265: abscisic acid homeostasis	8.78E-05
14	GO:0009638: phototropism	8.90E-05
15	GO:0009640: photomorphogenesis	1.79E-04
16	GO:0099402: plant organ development	2.08E-04
17	GO:0019441: tryptophan catabolic process to kynurenine	2.08E-04
18	GO:1901529: positive regulation of anion channel activity	2.08E-04
19	GO:0009585: red, far-red light phototransduction	2.69E-04
20	GO:1901672: positive regulation of systemic acquired resistance	3.48E-04
21	GO:0009150: purine ribonucleotide metabolic process	3.48E-04
22	GO:0071492: cellular response to UV-A	3.48E-04
23	GO:0010351: lithium ion transport	3.48E-04
24	GO:0010476: gibberellin mediated signaling pathway	3.48E-04
25	GO:0010325: raffinose family oligosaccharide biosynthetic process	3.48E-04
26	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	3.48E-04
27	GO:0031022: nuclear migration along microfilament	3.48E-04
28	GO:1902448: positive regulation of shade avoidance	3.48E-04
29	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	3.48E-04
30	GO:0009647: skotomorphogenesis	5.01E-04
31	GO:1901332: negative regulation of lateral root development	5.01E-04
32	GO:0009584: detection of visible light	5.01E-04
33	GO:0009399: nitrogen fixation	5.01E-04
34	GO:0010148: transpiration	5.01E-04
35	GO:0009963: positive regulation of flavonoid biosynthetic process	5.01E-04
36	GO:0006516: glycoprotein catabolic process	5.01E-04
37	GO:0006520: cellular amino acid metabolic process	5.37E-04
38	GO:0006749: glutathione metabolic process	6.66E-04
39	GO:1902347: response to strigolactone	6.66E-04
40	GO:0009902: chloroplast relocation	6.66E-04
41	GO:0034613: cellular protein localization	6.66E-04
42	GO:0006542: glutamine biosynthetic process	6.66E-04
43	GO:0009687: abscisic acid metabolic process	6.66E-04
44	GO:0006545: glycine biosynthetic process	6.66E-04
45	GO:0071486: cellular response to high light intensity	6.66E-04
46	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	6.66E-04
47	GO:0009765: photosynthesis, light harvesting	6.66E-04
48	GO:0051567: histone H3-K9 methylation	6.66E-04
49	GO:0000304: response to singlet oxygen	8.44E-04
50	GO:0098719: sodium ion import across plasma membrane	8.44E-04
51	GO:0010117: photoprotection	8.44E-04
52	GO:0010029: regulation of seed germination	9.88E-04
53	GO:0060918: auxin transport	1.03E-03
54	GO:0006796: phosphate-containing compound metabolic process	1.03E-03
55	GO:0016458: gene silencing	1.03E-03
56	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.03E-03
57	GO:0016070: RNA metabolic process	1.03E-03
58	GO:0031053: primary miRNA processing	1.03E-03
59	GO:0045962: positive regulation of development, heterochronic	1.03E-03
60	GO:1901371: regulation of leaf morphogenesis	1.03E-03
61	GO:0018298: protein-chromophore linkage	1.21E-03
62	GO:0009903: chloroplast avoidance movement	1.23E-03
63	GO:0048444: floral organ morphogenesis	1.23E-03
64	GO:0010555: response to mannitol	1.23E-03
65	GO:0010310: regulation of hydrogen peroxide metabolic process	1.23E-03
66	GO:2000067: regulation of root morphogenesis	1.23E-03
67	GO:0010218: response to far red light	1.32E-03
68	GO:0051510: regulation of unidimensional cell growth	1.44E-03
69	GO:0010374: stomatal complex development	1.44E-03
70	GO:0010161: red light signaling pathway	1.44E-03
71	GO:0009637: response to blue light	1.52E-03
72	GO:0009704: de-etiolation	1.66E-03
73	GO:0045292: mRNA cis splicing, via spliceosome	1.66E-03
74	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.66E-03
75	GO:0019430: removal of superoxide radicals	1.89E-03
76	GO:0010100: negative regulation of photomorphogenesis	1.89E-03
77	GO:0007186: G-protein coupled receptor signaling pathway	1.89E-03
78	GO:0009056: catabolic process	2.14E-03
79	GO:0015780: nucleotide-sugar transport	2.14E-03
80	GO:0009965: leaf morphogenesis	2.18E-03
81	GO:0051453: regulation of intracellular pH	2.39E-03
82	GO:1900426: positive regulation of defense response to bacterium	2.39E-03
83	GO:0009641: shade avoidance	2.65E-03
84	GO:0006325: chromatin organization	2.65E-03
85	GO:0009750: response to fructose	2.93E-03
86	GO:0006790: sulfur compound metabolic process	3.21E-03
87	GO:0030048: actin filament-based movement	3.50E-03
88	GO:2000028: regulation of photoperiodism, flowering	3.50E-03
89	GO:0050826: response to freezing	3.50E-03
90	GO:0010075: regulation of meristem growth	3.50E-03
91	GO:0009785: blue light signaling pathway	3.50E-03
92	GO:0009266: response to temperature stimulus	3.80E-03
93	GO:2000377: regulation of reactive oxygen species metabolic process	4.74E-03
94	GO:0009058: biosynthetic process	4.86E-03
95	GO:0019915: lipid storage	5.42E-03
96	GO:0006306: DNA methylation	5.42E-03
97	GO:0006012: galactose metabolic process	6.12E-03
98	GO:0009693: ethylene biosynthetic process	6.12E-03
99	GO:0005975: carbohydrate metabolic process	6.74E-03
100	GO:0010051: xylem and phloem pattern formation	7.24E-03
101	GO:0010087: phloem or xylem histogenesis	7.24E-03
102	GO:0010118: stomatal movement	7.24E-03
103	GO:0006814: sodium ion transport	8.02E-03
104	GO:0042752: regulation of circadian rhythm	8.02E-03
105	GO:0009646: response to absence of light	8.02E-03
106	GO:0009749: response to glucose	8.42E-03
107	GO:0009630: gravitropism	9.24E-03
108	GO:1901657: glycosyl compound metabolic process	9.67E-03
109	GO:0071805: potassium ion transmembrane transport	1.05E-02
110	GO:0042128: nitrate assimilation	1.24E-02
111	GO:0048573: photoperiodism, flowering	1.28E-02
112	GO:0009407: toxin catabolic process	1.48E-02
113	GO:0010119: regulation of stomatal movement	1.53E-02
114	GO:0009867: jasmonic acid mediated signaling pathway	1.63E-02
115	GO:0032259: methylation	1.73E-02
116	GO:0006839: mitochondrial transport	1.79E-02
117	GO:0006281: DNA repair	1.81E-02
118	GO:0006897: endocytosis	1.84E-02
119	GO:0010114: response to red light	1.95E-02
120	GO:0009744: response to sucrose	1.95E-02
121	GO:0009644: response to high light intensity	2.06E-02
122	GO:0008643: carbohydrate transport	2.06E-02
123	GO:0009636: response to toxic substance	2.12E-02
124	GO:0031347: regulation of defense response	2.24E-02
125	GO:0009409: response to cold	2.31E-02
126	GO:0010224: response to UV-B	2.47E-02
127	GO:0051603: proteolysis involved in cellular protein catabolic process	2.47E-02
128	GO:0006810: transport	2.56E-02
129	GO:0006417: regulation of translation	2.60E-02
130	GO:0035556: intracellular signal transduction	3.38E-02
131	GO:0000398: mRNA splicing, via spliceosome	3.44E-02
132	GO:0006457: protein folding	4.14E-02
133	GO:0007623: circadian rhythm	4.58E-02
134	GO:0009739: response to gibberellin	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
2	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
3	GO:0008170: N-methyltransferase activity	0.00E+00
4	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
5	GO:0009008: DNA-methyltransferase activity	0.00E+00
6	GO:0031517: red light photoreceptor activity	0.00E+00
7	GO:0071949: FAD binding	7.31E-05
8	GO:1990841: promoter-specific chromatin binding	8.78E-05
9	GO:0004793: threonine aldolase activity	8.78E-05
10	GO:0008732: L-allo-threonine aldolase activity	8.78E-05
11	GO:0031516: far-red light photoreceptor activity	8.78E-05
12	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	8.78E-05
13	GO:0046480: galactolipid galactosyltransferase activity	8.78E-05
14	GO:0080079: cellobiose glucosidase activity	8.78E-05
15	GO:0004560: alpha-L-fucosidase activity	8.78E-05
16	GO:0004061: arylformamidase activity	2.08E-04
17	GO:0010331: gibberellin binding	2.08E-04
18	GO:0009883: red or far-red light photoreceptor activity	2.08E-04
19	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.08E-04
20	GO:0008020: G-protein coupled photoreceptor activity	3.48E-04
21	GO:0001664: G-protein coupled receptor binding	3.48E-04
22	GO:0031683: G-protein beta/gamma-subunit complex binding	3.48E-04
23	GO:0000339: RNA cap binding	5.01E-04
24	GO:0009882: blue light photoreceptor activity	5.01E-04
25	GO:0047627: adenylylsulfatase activity	5.01E-04
26	GO:0004356: glutamate-ammonia ligase activity	8.44E-04
27	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.03E-03
28	GO:0015081: sodium ion transmembrane transporter activity	1.03E-03
29	GO:0004784: superoxide dismutase activity	1.03E-03
30	GO:0042802: identical protein binding	1.14E-03
31	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.23E-03
32	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.44E-03
33	GO:0004427: inorganic diphosphatase activity	1.44E-03
34	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.66E-03
35	GO:0004034: aldose 1-epimerase activity	1.66E-03
36	GO:0004673: protein histidine kinase activity	2.65E-03
37	GO:0015386: potassium:proton antiporter activity	2.93E-03
38	GO:0008378: galactosyltransferase activity	3.21E-03
39	GO:0022857: transmembrane transporter activity	3.48E-03
40	GO:0031072: heat shock protein binding	3.50E-03
41	GO:0000155: phosphorelay sensor kinase activity	3.50E-03
42	GO:0051082: unfolded protein binding	3.69E-03
43	GO:0004386: helicase activity	4.02E-03
44	GO:0004176: ATP-dependent peptidase activity	5.42E-03
45	GO:0016491: oxidoreductase activity	5.44E-03
46	GO:0004672: protein kinase activity	6.41E-03
47	GO:0016853: isomerase activity	8.02E-03
48	GO:0048038: quinone binding	8.83E-03
49	GO:0008168: methyltransferase activity	9.46E-03
50	GO:0015385: sodium:proton antiporter activity	9.67E-03
51	GO:0008237: metallopeptidase activity	1.05E-02
52	GO:0008483: transaminase activity	1.05E-02
53	GO:0016168: chlorophyll binding	1.19E-02
54	GO:0004806: triglyceride lipase activity	1.28E-02
55	GO:0005096: GTPase activator activity	1.43E-02
56	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.48E-02
57	GO:0004222: metalloendopeptidase activity	1.48E-02
58	GO:0042803: protein homodimerization activity	1.53E-02
59	GO:0004871: signal transducer activity	1.53E-02
60	GO:0008422: beta-glucosidase activity	1.74E-02
61	GO:0004364: glutathione transferase activity	1.90E-02
62	GO:0004185: serine-type carboxypeptidase activity	1.95E-02
63	GO:0035091: phosphatidylinositol binding	2.06E-02
64	GO:0016887: ATPase activity	2.80E-02
65	GO:0003676: nucleic acid binding	3.00E-02
66	GO:0008026: ATP-dependent helicase activity	3.23E-02
67	GO:0016829: lyase activity	3.85E-02
68	GO:0030170: pyridoxal phosphate binding	3.92E-02
69	GO:0016787: hydrolase activity	4.08E-02
70	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.22E-02
71	GO:0015297: antiporter activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0016604: nuclear body	1.11E-06
2	GO:0005845: mRNA cap binding complex	8.78E-05
3	GO:0000152: nuclear ubiquitin ligase complex	8.78E-05
4	GO:0005846: nuclear cap binding complex	2.08E-04
5	GO:0016605: PML body	3.48E-04
6	GO:0042646: plastid nucleoid	5.01E-04
7	GO:0030140: trans-Golgi network transport vesicle	1.03E-03
8	GO:0031359: integral component of chloroplast outer membrane	1.44E-03
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.14E-03
10	GO:0042644: chloroplast nucleoid	2.14E-03
11	GO:0005875: microtubule associated complex	4.42E-03
12	GO:0009536: plastid	4.88E-03
13	GO:0042651: thylakoid membrane	5.07E-03
14	GO:0009523: photosystem II	8.42E-03
15	GO:0032580: Golgi cisterna membrane	1.01E-02
16	GO:0005829: cytosol	1.04E-02
17	GO:0009295: nucleoid	1.05E-02
18	GO:0009941: chloroplast envelope	1.17E-02
19	GO:0009535: chloroplast thylakoid membrane	1.21E-02
20	GO:0009507: chloroplast	1.36E-02
21	GO:0009707: chloroplast outer membrane	1.38E-02
22	GO:0005743: mitochondrial inner membrane	1.68E-02
23	GO:0016607: nuclear speck	2.78E-02
24	GO:0010008: endosome membrane	2.78E-02
25	GO:0005834: heterotrimeric G-protein complex	2.84E-02
26	GO:0005654: nucleoplasm	3.57E-02
27	GO:0005623: cell	3.71E-02
28	GO:0005759: mitochondrial matrix	4.28E-02
29	GO:0005615: extracellular space	4.95E-02