co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:0000740: nuclear membrane fusion	0.00E+00
3	GO:0006592: ornithine biosynthetic process	0.00E+00
4	GO:0046890: regulation of lipid biosynthetic process	0.00E+00
5	GO:0010513: positive regulation of phosphatidylinositol biosynthetic process	0.00E+00
6	GO:0042430: indole-containing compound metabolic process	0.00E+00
7	GO:0019428: allantoin biosynthetic process	0.00E+00
8	GO:0006721: terpenoid metabolic process	0.00E+00
9	GO:0051603: proteolysis involved in cellular protein catabolic process	4.13E-06
10	GO:0006511: ubiquitin-dependent protein catabolic process	7.14E-06
11	GO:0006144: purine nucleobase metabolic process	1.52E-04
12	GO:0001560: regulation of cell growth by extracellular stimulus	1.52E-04
13	GO:0019628: urate catabolic process	1.52E-04
14	GO:0016487: farnesol metabolic process	1.52E-04
15	GO:0031468: nuclear envelope reassembly	1.52E-04
16	GO:0010265: SCF complex assembly	1.52E-04
17	GO:0009615: response to virus	1.74E-04
18	GO:0009751: response to salicylic acid	2.97E-04
19	GO:0080183: response to photooxidative stress	3.47E-04
20	GO:0055088: lipid homeostasis	3.47E-04
21	GO:0010198: synergid death	3.47E-04
22	GO:0006212: uracil catabolic process	3.47E-04
23	GO:0051788: response to misfolded protein	3.47E-04
24	GO:0019483: beta-alanine biosynthetic process	3.47E-04
25	GO:0006432: phenylalanyl-tRNA aminoacylation	3.47E-04
26	GO:0006807: nitrogen compound metabolic process	3.61E-04
27	GO:0055114: oxidation-reduction process	5.59E-04
28	GO:0045793: positive regulation of cell size	5.68E-04
29	GO:0071494: cellular response to UV-C	5.68E-04
30	GO:0046168: glycerol-3-phosphate catabolic process	5.68E-04
31	GO:0008333: endosome to lysosome transport	5.68E-04
32	GO:0009735: response to cytokinin	7.33E-04
33	GO:0009558: embryo sac cellularization	8.13E-04
34	GO:0001676: long-chain fatty acid metabolic process	8.13E-04
35	GO:0032877: positive regulation of DNA endoreduplication	8.13E-04
36	GO:0046836: glycolipid transport	8.13E-04
37	GO:0006166: purine ribonucleoside salvage	8.13E-04
38	GO:0051085: chaperone mediated protein folding requiring cofactor	8.13E-04
39	GO:0006107: oxaloacetate metabolic process	8.13E-04
40	GO:0006241: CTP biosynthetic process	8.13E-04
41	GO:0006072: glycerol-3-phosphate metabolic process	8.13E-04
42	GO:0009647: skotomorphogenesis	8.13E-04
43	GO:0006165: nucleoside diphosphate phosphorylation	8.13E-04
44	GO:0009113: purine nucleobase biosynthetic process	8.13E-04
45	GO:0006228: UTP biosynthetic process	8.13E-04
46	GO:0006164: purine nucleotide biosynthetic process	8.13E-04
47	GO:0006168: adenine salvage	8.13E-04
48	GO:0051289: protein homotetramerization	8.13E-04
49	GO:1902290: positive regulation of defense response to oomycetes	8.13E-04
50	GO:0009651: response to salt stress	8.21E-04
51	GO:0080142: regulation of salicylic acid biosynthetic process	1.08E-03
52	GO:0051781: positive regulation of cell division	1.08E-03
53	GO:0006183: GTP biosynthetic process	1.08E-03
54	GO:0010363: regulation of plant-type hypersensitive response	1.08E-03
55	GO:0006221: pyrimidine nucleotide biosynthetic process	1.08E-03
56	GO:0071219: cellular response to molecule of bacterial origin	1.08E-03
57	GO:0032366: intracellular sterol transport	1.08E-03
58	GO:0044205: 'de novo' UMP biosynthetic process	1.08E-03
59	GO:0015986: ATP synthesis coupled proton transport	1.17E-03
60	GO:0009229: thiamine diphosphate biosynthetic process	1.36E-03
61	GO:0044209: AMP salvage	1.36E-03
62	GO:0071493: cellular response to UV-B	1.36E-03
63	GO:0036065: fucosylation	1.36E-03
64	GO:0006564: L-serine biosynthetic process	1.36E-03
65	GO:0030163: protein catabolic process	1.52E-03
66	GO:0009408: response to heat	1.61E-03
67	GO:0009759: indole glucosinolate biosynthetic process	1.67E-03
68	GO:0006751: glutathione catabolic process	1.67E-03
69	GO:0043248: proteasome assembly	1.67E-03
70	GO:0009228: thiamine biosynthetic process	1.67E-03
71	GO:1901001: negative regulation of response to salt stress	2.01E-03
72	GO:0009612: response to mechanical stimulus	2.01E-03
73	GO:0009627: systemic acquired resistance	2.14E-03
74	GO:0007623: circadian rhythm	2.15E-03
75	GO:0010044: response to aluminum ion	2.36E-03
76	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.36E-03
77	GO:0080027: response to herbivore	2.36E-03
78	GO:0048528: post-embryonic root development	2.36E-03
79	GO:1900056: negative regulation of leaf senescence	2.36E-03
80	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.36E-03
81	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.48E-03
82	GO:0009817: defense response to fungus, incompatible interaction	2.49E-03
83	GO:0009617: response to bacterium	2.69E-03
84	GO:0050821: protein stabilization	2.73E-03
85	GO:0031540: regulation of anthocyanin biosynthetic process	2.73E-03
86	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.73E-03
87	GO:1900150: regulation of defense response to fungus	2.73E-03
88	GO:0009690: cytokinin metabolic process	2.73E-03
89	GO:0042742: defense response to bacterium	2.94E-03
90	GO:0006979: response to oxidative stress	2.98E-03
91	GO:0043562: cellular response to nitrogen levels	3.12E-03
92	GO:0010120: camalexin biosynthetic process	3.12E-03
93	GO:0006526: arginine biosynthetic process	3.12E-03
94	GO:0006189: 'de novo' IMP biosynthetic process	3.53E-03
95	GO:0098656: anion transmembrane transport	3.53E-03
96	GO:0009245: lipid A biosynthetic process	3.53E-03
97	GO:0009821: alkaloid biosynthetic process	3.53E-03
98	GO:0010112: regulation of systemic acquired resistance	3.53E-03
99	GO:0006631: fatty acid metabolic process	3.74E-03
100	GO:1900426: positive regulation of defense response to bacterium	3.96E-03
101	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	3.96E-03
102	GO:0009926: auxin polar transport	4.05E-03
103	GO:0043069: negative regulation of programmed cell death	4.40E-03
104	GO:0072593: reactive oxygen species metabolic process	4.86E-03
105	GO:0006820: anion transport	5.34E-03
106	GO:0002213: defense response to insect	5.34E-03
107	GO:0006108: malate metabolic process	5.83E-03
108	GO:2000028: regulation of photoperiodism, flowering	5.83E-03
109	GO:0006626: protein targeting to mitochondrion	5.83E-03
110	GO:0045454: cell redox homeostasis	6.17E-03
111	GO:0007034: vacuolar transport	6.33E-03
112	GO:0046686: response to cadmium ion	6.38E-03
113	GO:0009969: xyloglucan biosynthetic process	6.86E-03
114	GO:0007030: Golgi organization	6.86E-03
115	GO:0009626: plant-type hypersensitive response	6.87E-03
116	GO:0009620: response to fungus	7.09E-03
117	GO:0006071: glycerol metabolic process	7.40E-03
118	GO:0006289: nucleotide-excision repair	7.95E-03
119	GO:0006487: protein N-linked glycosylation	7.95E-03
120	GO:0009116: nucleoside metabolic process	7.95E-03
121	GO:0000027: ribosomal large subunit assembly	7.95E-03
122	GO:0009863: salicylic acid mediated signaling pathway	7.95E-03
123	GO:0006629: lipid metabolic process	8.06E-03
124	GO:0048511: rhythmic process	9.10E-03
125	GO:0007005: mitochondrion organization	9.69E-03
126	GO:0042744: hydrogen peroxide catabolic process	1.11E-02
127	GO:0042147: retrograde transport, endosome to Golgi	1.16E-02
128	GO:0034220: ion transmembrane transport	1.22E-02
129	GO:0000413: protein peptidyl-prolyl isomerization	1.22E-02
130	GO:0010051: xylem and phloem pattern formation	1.22E-02
131	GO:0010118: stomatal movement	1.22E-02
132	GO:0042631: cellular response to water deprivation	1.22E-02
133	GO:0010197: polar nucleus fusion	1.29E-02
134	GO:0061025: membrane fusion	1.36E-02
135	GO:0006623: protein targeting to vacuole	1.42E-02
136	GO:0048825: cotyledon development	1.42E-02
137	GO:0080156: mitochondrial mRNA modification	1.50E-02
138	GO:0002229: defense response to oomycetes	1.50E-02
139	GO:0010193: response to ozone	1.50E-02
140	GO:0032502: developmental process	1.57E-02
141	GO:0006914: autophagy	1.71E-02
142	GO:0000910: cytokinesis	1.86E-02
143	GO:0050832: defense response to fungus	1.94E-02
144	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.02E-02
145	GO:0006974: cellular response to DNA damage stimulus	2.10E-02
146	GO:0006457: protein folding	2.31E-02
147	GO:0009723: response to ethylene	2.41E-02
148	GO:0009832: plant-type cell wall biogenesis	2.43E-02
149	GO:0009407: toxin catabolic process	2.51E-02
150	GO:0010043: response to zinc ion	2.60E-02
151	GO:0007568: aging	2.60E-02
152	GO:0009853: photorespiration	2.78E-02
153	GO:0045087: innate immune response	2.78E-02
154	GO:0044550: secondary metabolite biosynthetic process	2.81E-02
155	GO:0051707: response to other organism	3.32E-02
156	GO:0006855: drug transmembrane transport	3.71E-02
157	GO:0031347: regulation of defense response	3.81E-02
158	GO:0009753: response to jasmonic acid	4.09E-02
159	GO:0006486: protein glycosylation	4.11E-02
160	GO:0009736: cytokinin-activated signaling pathway	4.11E-02
161	GO:0010224: response to UV-B	4.21E-02
162	GO:0009733: response to auxin	4.64E-02
163	GO:0006412: translation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0008777: acetylornithine deacetylase activity	0.00E+00
2	GO:0033971: hydroxyisourate hydrolase activity	0.00E+00
3	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
4	GO:0008752: FMN reductase activity	0.00E+00
5	GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity	0.00E+00
6	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
7	GO:0003837: beta-ureidopropionase activity	0.00E+00
8	GO:0050152: omega-amidase activity	0.00E+00
9	GO:0004637: phosphoribosylamine-glycine ligase activity	0.00E+00
10	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
11	GO:0004151: dihydroorotase activity	0.00E+00
12	GO:0050334: thiaminase activity	0.00E+00
13	GO:0047886: farnesol dehydrogenase activity	0.00E+00
14	GO:0004298: threonine-type endopeptidase activity	8.91E-13
15	GO:0008233: peptidase activity	2.47E-09
16	GO:0019786: Atg8-specific protease activity	1.52E-04
17	GO:0050897: cobalt ion binding	3.07E-04
18	GO:0008517: folic acid transporter activity	3.47E-04
19	GO:0004617: phosphoglycerate dehydrogenase activity	3.47E-04
20	GO:0018708: thiol S-methyltransferase activity	3.47E-04
21	GO:0004826: phenylalanine-tRNA ligase activity	3.47E-04
22	GO:0019779: Atg8 activating enzyme activity	3.47E-04
23	GO:0031072: heat shock protein binding	3.61E-04
24	GO:0043130: ubiquitin binding	5.64E-04
25	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	5.68E-04
26	GO:0052692: raffinose alpha-galactosidase activity	5.68E-04
27	GO:0004557: alpha-galactosidase activity	5.68E-04
28	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.68E-04
29	GO:0004550: nucleoside diphosphate kinase activity	8.13E-04
30	GO:0017089: glycolipid transporter activity	8.13E-04
31	GO:0003999: adenine phosphoribosyltransferase activity	8.13E-04
32	GO:0010011: auxin binding	1.08E-03
33	GO:0051861: glycolipid binding	1.08E-03
34	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.08E-03
35	GO:0070628: proteasome binding	1.08E-03
36	GO:0004576: oligosaccharyl transferase activity	1.08E-03
37	GO:0019776: Atg8 ligase activity	1.08E-03
38	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.09E-03
39	GO:0015035: protein disulfide oxidoreductase activity	1.12E-03
40	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.36E-03
41	GO:0004040: amidase activity	1.36E-03
42	GO:0031593: polyubiquitin binding	1.67E-03
43	GO:0031177: phosphopantetheine binding	1.67E-03
44	GO:0051117: ATPase binding	1.67E-03
45	GO:0008237: metallopeptidase activity	1.71E-03
46	GO:0004656: procollagen-proline 4-dioxygenase activity	2.01E-03
47	GO:0102391: decanoate--CoA ligase activity	2.01E-03
48	GO:0000035: acyl binding	2.01E-03
49	GO:0004467: long-chain fatty acid-CoA ligase activity	2.36E-03
50	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	2.36E-03
51	GO:0043295: glutathione binding	2.36E-03
52	GO:0015288: porin activity	2.73E-03
53	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	2.73E-03
54	GO:0008308: voltage-gated anion channel activity	3.12E-03
55	GO:0008417: fucosyltransferase activity	3.53E-03
56	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.53E-03
57	GO:0004601: peroxidase activity	3.74E-03
58	GO:0016844: strictosidine synthase activity	3.96E-03
59	GO:0051537: 2 iron, 2 sulfur cluster binding	4.38E-03
60	GO:0008559: xenobiotic-transporting ATPase activity	4.86E-03
61	GO:0008794: arsenate reductase (glutaredoxin) activity	4.86E-03
62	GO:0051287: NAD binding	4.90E-03
63	GO:0046872: metal ion binding	5.32E-03
64	GO:0000049: tRNA binding	5.34E-03
65	GO:0004022: alcohol dehydrogenase (NAD) activity	5.83E-03
66	GO:0004175: endopeptidase activity	6.33E-03
67	GO:0008266: poly(U) RNA binding	6.33E-03
68	GO:0020037: heme binding	6.52E-03
69	GO:0004190: aspartic-type endopeptidase activity	6.86E-03
70	GO:0008061: chitin binding	6.86E-03
71	GO:0003712: transcription cofactor activity	6.86E-03
72	GO:0051082: unfolded protein binding	7.76E-03
73	GO:0031418: L-ascorbic acid binding	7.95E-03
74	GO:0009055: electron carrier activity	8.81E-03
75	GO:0004540: ribonuclease activity	9.10E-03
76	GO:0003735: structural constituent of ribosome	9.76E-03
77	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	9.99E-03
78	GO:0005506: iron ion binding	1.09E-02
79	GO:0001085: RNA polymerase II transcription factor binding	1.29E-02
80	GO:0010181: FMN binding	1.36E-02
81	GO:0050662: coenzyme binding	1.36E-02
82	GO:0004872: receptor activity	1.42E-02
83	GO:0005515: protein binding	1.43E-02
84	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.71E-02
85	GO:0003684: damaged DNA binding	1.71E-02
86	GO:0016597: amino acid binding	1.86E-02
87	GO:0015250: water channel activity	1.94E-02
88	GO:0016788: hydrolase activity, acting on ester bonds	2.13E-02
89	GO:0030247: polysaccharide binding	2.18E-02
90	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.34E-02
91	GO:0004497: monooxygenase activity	2.59E-02
92	GO:0019825: oxygen binding	2.60E-02
93	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.60E-02
94	GO:0003697: single-stranded DNA binding	2.78E-02
95	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.78E-02
96	GO:0003993: acid phosphatase activity	2.86E-02
97	GO:0004364: glutathione transferase activity	3.23E-02
98	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.34E-02
99	GO:0004722: protein serine/threonine phosphatase activity	3.39E-02
100	GO:0005524: ATP binding	3.47E-02
101	GO:0043621: protein self-association	3.52E-02
102	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.71E-02
103	GO:0016298: lipase activity	4.21E-02
104	GO:0008234: cysteine-type peptidase activity	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	3.66E-14
2	GO:0005839: proteasome core complex	8.91E-13
3	GO:0005829: cytosol	1.04E-11
4	GO:0005773: vacuole	8.20E-11
5	GO:0005774: vacuolar membrane	2.92E-08
6	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.84E-05
7	GO:0019773: proteasome core complex, alpha-subunit complex	1.36E-04
8	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	1.52E-04
9	GO:0022626: cytosolic ribosome	1.53E-04
10	GO:0005753: mitochondrial proton-transporting ATP synthase complex	4.57E-04
11	GO:0005758: mitochondrial intermembrane space	5.64E-04
12	GO:0046861: glyoxysomal membrane	5.68E-04
13	GO:0005775: vacuolar lumen	8.13E-04
14	GO:0009331: glycerol-3-phosphate dehydrogenase complex	8.13E-04
15	GO:0005776: autophagosome	1.08E-03
16	GO:0008250: oligosaccharyltransferase complex	1.36E-03
17	GO:0005771: multivesicular body	1.67E-03
18	GO:0030904: retromer complex	1.67E-03
19	GO:0005783: endoplasmic reticulum	1.67E-03
20	GO:0000421: autophagosome membrane	2.73E-03
21	GO:0015934: large ribosomal subunit	2.88E-03
22	GO:0000325: plant-type vacuole	2.88E-03
23	GO:0046930: pore complex	3.12E-03
24	GO:0009514: glyoxysome	3.12E-03
25	GO:0008541: proteasome regulatory particle, lid subcomplex	4.86E-03
26	GO:0005737: cytoplasm	6.28E-03
27	GO:0005747: mitochondrial respiratory chain complex I	6.65E-03
28	GO:0005794: Golgi apparatus	7.72E-03
29	GO:0009507: chloroplast	8.19E-03
30	GO:0045271: respiratory chain complex I	8.51E-03
31	GO:0070469: respiratory chain	8.51E-03
32	GO:0005741: mitochondrial outer membrane	9.10E-03
33	GO:0031410: cytoplasmic vesicle	9.69E-03
34	GO:0005886: plasma membrane	9.72E-03
35	GO:0009543: chloroplast thylakoid lumen	9.73E-03
36	GO:0005840: ribosome	1.20E-02
37	GO:0032580: Golgi cisterna membrane	1.71E-02
38	GO:0005777: peroxisome	1.99E-02
39	GO:0005788: endoplasmic reticulum lumen	2.02E-02
40	GO:0005667: transcription factor complex	2.10E-02
41	GO:0022625: cytosolic large ribosomal subunit	2.72E-02
42	GO:0009570: chloroplast stroma	2.89E-02
43	GO:0005819: spindle	2.95E-02
44	GO:0031902: late endosome membrane	3.14E-02
45	GO:0005618: cell wall	3.15E-02
46	GO:0005743: mitochondrial inner membrane	3.55E-02
47	GO:0031966: mitochondrial membrane	3.91E-02
48	GO:0009941: chloroplast envelope	4.17E-02
49	GO:0009506: plasmodesma	4.65E-02