co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006069: ethanol oxidation	0.00E+00
2	GO:0032780: negative regulation of ATPase activity	0.00E+00
3	GO:0046292: formaldehyde metabolic process	0.00E+00
4	GO:0046294: formaldehyde catabolic process	0.00E+00
5	GO:0006520: cellular amino acid metabolic process	3.12E-05
6	GO:0009903: chloroplast avoidance movement	3.24E-05
7	GO:0009880: embryonic pattern specification	7.24E-05
8	GO:0006567: threonine catabolic process	1.00E-04
9	GO:1902265: abscisic acid homeostasis	1.00E-04
10	GO:0048527: lateral root development	1.42E-04
11	GO:0019441: tryptophan catabolic process to kynurenine	2.36E-04
12	GO:0080183: response to photooxidative stress	2.36E-04
13	GO:2000030: regulation of response to red or far red light	2.36E-04
14	GO:0030010: establishment of cell polarity	2.36E-04
15	GO:1901562: response to paraquat	3.92E-04
16	GO:0015940: pantothenate biosynthetic process	3.92E-04
17	GO:0071492: cellular response to UV-A	3.92E-04
18	GO:0006760: folic acid-containing compound metabolic process	3.92E-04
19	GO:0010351: lithium ion transport	3.92E-04
20	GO:0010476: gibberellin mediated signaling pathway	3.92E-04
21	GO:0010325: raffinose family oligosaccharide biosynthetic process	3.92E-04
22	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	3.92E-04
23	GO:0031022: nuclear migration along microfilament	3.92E-04
24	GO:0009647: skotomorphogenesis	5.64E-04
25	GO:0006624: vacuolar protein processing	5.64E-04
26	GO:0009399: nitrogen fixation	5.64E-04
27	GO:0009963: positive regulation of flavonoid biosynthetic process	5.64E-04
28	GO:0006516: glycoprotein catabolic process	5.64E-04
29	GO:0009902: chloroplast relocation	7.50E-04
30	GO:0034613: cellular protein localization	7.50E-04
31	GO:0006542: glutamine biosynthetic process	7.50E-04
32	GO:0006545: glycine biosynthetic process	7.50E-04
33	GO:0071486: cellular response to high light intensity	7.50E-04
34	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	7.50E-04
35	GO:0009765: photosynthesis, light harvesting	7.50E-04
36	GO:0071249: cellular response to nitrate	7.50E-04
37	GO:0051567: histone H3-K9 methylation	7.50E-04
38	GO:0009649: entrainment of circadian clock	7.50E-04
39	GO:0006749: glutathione metabolic process	7.50E-04
40	GO:0098719: sodium ion import across plasma membrane	9.47E-04
41	GO:0046283: anthocyanin-containing compound metabolic process	9.47E-04
42	GO:0009904: chloroplast accumulation movement	9.47E-04
43	GO:0006796: phosphate-containing compound metabolic process	1.16E-03
44	GO:0009117: nucleotide metabolic process	1.16E-03
45	GO:0016458: gene silencing	1.16E-03
46	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.16E-03
47	GO:0016070: RNA metabolic process	1.16E-03
48	GO:0031053: primary miRNA processing	1.16E-03
49	GO:0048444: floral organ morphogenesis	1.38E-03
50	GO:0050790: regulation of catalytic activity	1.62E-03
51	GO:0035556: intracellular signal transduction	1.76E-03
52	GO:0009637: response to blue light	1.81E-03
53	GO:0009704: de-etiolation	1.87E-03
54	GO:0009231: riboflavin biosynthetic process	1.87E-03
55	GO:0045292: mRNA cis splicing, via spliceosome	1.87E-03
56	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.87E-03
57	GO:0006970: response to osmotic stress	2.01E-03
58	GO:0019430: removal of superoxide radicals	2.14E-03
59	GO:0015996: chlorophyll catabolic process	2.14E-03
60	GO:0009056: catabolic process	2.41E-03
61	GO:0015780: nucleotide-sugar transport	2.41E-03
62	GO:0042761: very long-chain fatty acid biosynthetic process	2.70E-03
63	GO:0051453: regulation of intracellular pH	2.70E-03
64	GO:0045036: protein targeting to chloroplast	3.00E-03
65	GO:0009641: shade avoidance	3.00E-03
66	GO:0051603: proteolysis involved in cellular protein catabolic process	3.22E-03
67	GO:0010224: response to UV-B	3.22E-03
68	GO:0006879: cellular iron ion homeostasis	3.31E-03
69	GO:0006378: mRNA polyadenylation	3.31E-03
70	GO:0052544: defense response by callose deposition in cell wall	3.31E-03
71	GO:0010152: pollen maturation	3.63E-03
72	GO:0016042: lipid catabolic process	3.78E-03
73	GO:0030048: actin filament-based movement	3.95E-03
74	GO:0006006: glucose metabolic process	3.95E-03
75	GO:0050826: response to freezing	3.95E-03
76	GO:0009753: response to jasmonic acid	4.29E-03
77	GO:0019853: L-ascorbic acid biosynthetic process	4.64E-03
78	GO:0009058: biosynthetic process	5.82E-03
79	GO:0019915: lipid storage	6.14E-03
80	GO:0061077: chaperone-mediated protein folding	6.14E-03
81	GO:0006306: DNA methylation	6.14E-03
82	GO:0016226: iron-sulfur cluster assembly	6.54E-03
83	GO:0006012: galactose metabolic process	6.94E-03
84	GO:0009693: ethylene biosynthetic process	6.94E-03
85	GO:0048443: stamen development	7.35E-03
86	GO:0080022: primary root development	8.21E-03
87	GO:0010051: xylem and phloem pattern formation	8.21E-03
88	GO:0042391: regulation of membrane potential	8.21E-03
89	GO:0009611: response to wounding	8.35E-03
90	GO:0009739: response to gibberellin	8.52E-03
91	GO:0005975: carbohydrate metabolic process	8.90E-03
92	GO:0006814: sodium ion transport	9.10E-03
93	GO:1901657: glycosyl compound metabolic process	1.10E-02
94	GO:0010090: trichome morphogenesis	1.10E-02
95	GO:0009826: unidimensional cell growth	1.14E-02
96	GO:0010286: heat acclimation	1.20E-02
97	GO:0071805: potassium ion transmembrane transport	1.20E-02
98	GO:0010029: regulation of seed germination	1.35E-02
99	GO:0009723: response to ethylene	1.37E-02
100	GO:0042128: nitrate assimilation	1.40E-02
101	GO:0048573: photoperiodism, flowering	1.46E-02
102	GO:0080167: response to karrikin	1.47E-02
103	GO:0008219: cell death	1.57E-02
104	GO:0055114: oxidation-reduction process	1.60E-02
105	GO:0009407: toxin catabolic process	1.68E-02
106	GO:0010119: regulation of stomatal movement	1.74E-02
107	GO:0009751: response to salicylic acid	2.14E-02
108	GO:0009408: response to heat	2.17E-02
109	GO:0006281: DNA repair	2.17E-02
110	GO:0030154: cell differentiation	2.21E-02
111	GO:0009640: photomorphogenesis	2.22E-02
112	GO:0048364: root development	2.26E-02
113	GO:0008643: carbohydrate transport	2.35E-02
114	GO:0009636: response to toxic substance	2.41E-02
115	GO:0009965: leaf morphogenesis	2.41E-02
116	GO:0006508: proteolysis	2.56E-02
117	GO:0009736: cytokinin-activated signaling pathway	2.75E-02
118	GO:0009585: red, far-red light phototransduction	2.75E-02
119	GO:0009409: response to cold	2.90E-02
120	GO:0006417: regulation of translation	2.95E-02
121	GO:0009734: auxin-activated signaling pathway	3.05E-02
122	GO:0048316: seed development	3.17E-02
123	GO:0009620: response to fungus	3.31E-02
124	GO:0016569: covalent chromatin modification	3.38E-02
125	GO:0046686: response to cadmium ion	3.45E-02
126	GO:0006468: protein phosphorylation	3.69E-02
127	GO:0000398: mRNA splicing, via spliceosome	3.91E-02
128	GO:0042744: hydrogen peroxide catabolic process	4.54E-02
129	GO:0009790: embryo development	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
2	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
3	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
4	GO:0008170: N-methyltransferase activity	0.00E+00
5	GO:0042030: ATPase inhibitor activity	0.00E+00
6	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
7	GO:0080007: S-nitrosoglutathione reductase activity	0.00E+00
8	GO:0009008: DNA-methyltransferase activity	0.00E+00
9	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
10	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
11	GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity	0.00E+00
12	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
13	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.28E-05
14	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	1.00E-04
15	GO:0080047: GDP-L-galactose phosphorylase activity	1.00E-04
16	GO:0004793: threonine aldolase activity	1.00E-04
17	GO:0008732: L-allo-threonine aldolase activity	1.00E-04
18	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.00E-04
19	GO:0080048: GDP-D-glucose phosphorylase activity	1.00E-04
20	GO:0046480: galactolipid galactosyltransferase activity	1.00E-04
21	GO:0080079: cellobiose glucosidase activity	1.00E-04
22	GO:0004560: alpha-L-fucosidase activity	1.00E-04
23	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.00E-04
24	GO:0004061: arylformamidase activity	2.36E-04
25	GO:0010331: gibberellin binding	2.36E-04
26	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.36E-04
27	GO:0052692: raffinose alpha-galactosidase activity	3.92E-04
28	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.92E-04
29	GO:0004557: alpha-galactosidase activity	3.92E-04
30	GO:0003935: GTP cyclohydrolase II activity	3.92E-04
31	GO:0035529: NADH pyrophosphatase activity	5.64E-04
32	GO:0016656: monodehydroascorbate reductase (NADH) activity	5.64E-04
33	GO:0000339: RNA cap binding	5.64E-04
34	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	7.50E-04
35	GO:0010011: auxin binding	7.50E-04
36	GO:0004197: cysteine-type endopeptidase activity	8.35E-04
37	GO:0004356: glutamate-ammonia ligase activity	9.47E-04
38	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.16E-03
39	GO:0015081: sodium ion transmembrane transporter activity	1.16E-03
40	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.16E-03
41	GO:0004784: superoxide dismutase activity	1.16E-03
42	GO:0070300: phosphatidic acid binding	1.38E-03
43	GO:0005261: cation channel activity	1.38E-03
44	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.38E-03
45	GO:0005085: guanyl-nucleotide exchange factor activity	1.62E-03
46	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.62E-03
47	GO:0004427: inorganic diphosphatase activity	1.62E-03
48	GO:0016788: hydrolase activity, acting on ester bonds	1.87E-03
49	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.87E-03
50	GO:0004034: aldose 1-epimerase activity	1.87E-03
51	GO:0071949: FAD binding	2.41E-03
52	GO:0052689: carboxylic ester hydrolase activity	2.72E-03
53	GO:0015386: potassium:proton antiporter activity	3.31E-03
54	GO:0008378: galactosyltransferase activity	3.63E-03
55	GO:0004022: alcohol dehydrogenase (NAD) activity	3.95E-03
56	GO:0016787: hydrolase activity	4.10E-03
57	GO:0022857: transmembrane transporter activity	4.16E-03
58	GO:0004175: endopeptidase activity	4.30E-03
59	GO:0030552: cAMP binding	4.64E-03
60	GO:0030553: cGMP binding	4.64E-03
61	GO:0005528: FK506 binding	5.37E-03
62	GO:0005216: ion channel activity	5.75E-03
63	GO:0030170: pyridoxal phosphate binding	6.13E-03
64	GO:0004176: ATP-dependent peptidase activity	6.14E-03
65	GO:0016491: oxidoreductase activity	7.18E-03
66	GO:0005249: voltage-gated potassium channel activity	8.21E-03
67	GO:0030551: cyclic nucleotide binding	8.21E-03
68	GO:0004672: protein kinase activity	8.46E-03
69	GO:0016853: isomerase activity	9.10E-03
70	GO:0048038: quinone binding	1.00E-02
71	GO:0015385: sodium:proton antiporter activity	1.10E-02
72	GO:0008483: transaminase activity	1.20E-02
73	GO:0008237: metallopeptidase activity	1.20E-02
74	GO:0005515: protein binding	1.34E-02
75	GO:0016168: chlorophyll binding	1.35E-02
76	GO:0004806: triglyceride lipase activity	1.46E-02
77	GO:0008236: serine-type peptidase activity	1.51E-02
78	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.68E-02
79	GO:0004222: metalloendopeptidase activity	1.68E-02
80	GO:0050897: cobalt ion binding	1.74E-02
81	GO:0008422: beta-glucosidase activity	1.97E-02
82	GO:0004364: glutathione transferase activity	2.16E-02
83	GO:0004185: serine-type carboxypeptidase activity	2.22E-02
84	GO:0051537: 2 iron, 2 sulfur cluster binding	2.35E-02
85	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.48E-02
86	GO:0016298: lipase activity	2.81E-02
87	GO:0008234: cysteine-type peptidase activity	2.95E-02
88	GO:0004386: helicase activity	3.76E-02
89	GO:0016829: lyase activity	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0005845: mRNA cap binding complex	1.00E-04
2	GO:0000152: nuclear ubiquitin ligase complex	1.00E-04
3	GO:0005764: lysosome	2.31E-04
4	GO:0005846: nuclear cap binding complex	2.36E-04
5	GO:0009507: chloroplast	3.23E-04
6	GO:0009941: chloroplast envelope	4.54E-04
7	GO:0000323: lytic vacuole	5.64E-04
8	GO:0005849: mRNA cleavage factor complex	5.64E-04
9	GO:0042646: plastid nucleoid	5.64E-04
10	GO:0005829: cytosol	6.78E-04
11	GO:0031463: Cul3-RING ubiquitin ligase complex	1.16E-03
12	GO:0031359: integral component of chloroplast outer membrane	1.62E-03
13	GO:0009501: amyloplast	1.87E-03
14	GO:0005773: vacuole	2.01E-03
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.41E-03
16	GO:0042644: chloroplast nucleoid	2.41E-03
17	GO:0016604: nuclear body	2.70E-03
18	GO:0005875: microtubule associated complex	5.00E-03
19	GO:0005623: cell	5.67E-03
20	GO:0009536: plastid	6.44E-03
21	GO:0005615: extracellular space	8.52E-03
22	GO:0009523: photosystem II	9.56E-03
23	GO:0048046: apoplast	1.03E-02
24	GO:0005737: cytoplasm	1.15E-02
25	GO:0032580: Golgi cisterna membrane	1.15E-02
26	GO:0005778: peroxisomal membrane	1.20E-02
27	GO:0010319: stromule	1.20E-02
28	GO:0009295: nucleoid	1.20E-02
29	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.30E-02
30	GO:0009707: chloroplast outer membrane	1.57E-02
31	GO:0009535: chloroplast thylakoid membrane	1.60E-02
32	GO:0010008: endosome membrane	3.17E-02
33	GO:0009706: chloroplast inner membrane	3.53E-02
34	GO:0010287: plastoglobule	3.99E-02
35	GO:0005654: nucleoplasm	4.06E-02