Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G02450

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
2GO:0019750: chloroplast localization0.00E+00
3GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
4GO:0090239: regulation of histone H4 acetylation0.00E+00
5GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
6GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
7GO:0009264: deoxyribonucleotide catabolic process0.00E+00
8GO:0006412: translation1.57E-136
9GO:0042254: ribosome biogenesis1.97E-54
10GO:0000027: ribosomal large subunit assembly2.05E-11
11GO:0006511: ubiquitin-dependent protein catabolic process2.86E-10
12GO:0000028: ribosomal small subunit assembly1.49E-08
13GO:0006626: protein targeting to mitochondrion5.24E-07
14GO:0051603: proteolysis involved in cellular protein catabolic process8.41E-06
15GO:0009955: adaxial/abaxial pattern specification2.42E-05
16GO:0006414: translational elongation4.01E-05
17GO:1902626: assembly of large subunit precursor of preribosome6.14E-05
18GO:0000398: mRNA splicing, via spliceosome2.34E-04
19GO:0006820: anion transport2.51E-04
20GO:0009735: response to cytokinin4.03E-04
21GO:0043248: proteasome assembly4.58E-04
22GO:0045040: protein import into mitochondrial outer membrane4.58E-04
23GO:0009651: response to salt stress6.08E-04
24GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.60E-04
25GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.60E-04
26GO:1901349: glucosinolate transport6.60E-04
27GO:0006407: rRNA export from nucleus6.60E-04
28GO:0090449: phloem glucosinolate loading6.60E-04
29GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process6.60E-04
30GO:0015801: aromatic amino acid transport6.60E-04
31GO:1990542: mitochondrial transmembrane transport6.60E-04
32GO:0030490: maturation of SSU-rRNA6.60E-04
33GO:2001006: regulation of cellulose biosynthetic process6.60E-04
34GO:0006434: seryl-tRNA aminoacylation6.60E-04
35GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process6.95E-04
36GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c7.76E-04
37GO:0000413: protein peptidyl-prolyl isomerization1.20E-03
38GO:0009245: lipid A biosynthetic process1.40E-03
39GO:0098656: anion transmembrane transport1.40E-03
40GO:0006452: translational frameshifting1.42E-03
41GO:0051788: response to misfolded protein1.42E-03
42GO:0015786: UDP-glucose transport1.42E-03
43GO:0006432: phenylalanyl-tRNA aminoacylation1.42E-03
44GO:0045905: positive regulation of translational termination1.42E-03
45GO:0071668: plant-type cell wall assembly1.42E-03
46GO:0009156: ribonucleoside monophosphate biosynthetic process1.42E-03
47GO:0045901: positive regulation of translational elongation1.42E-03
48GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.42E-03
49GO:0048569: post-embryonic animal organ development1.42E-03
50GO:0043981: histone H4-K5 acetylation1.42E-03
51GO:0008283: cell proliferation1.43E-03
52GO:0046686: response to cadmium ion1.63E-03
53GO:0000387: spliceosomal snRNP assembly1.66E-03
54GO:0010452: histone H3-K36 methylation2.35E-03
55GO:1904278: positive regulation of wax biosynthetic process2.35E-03
56GO:0009150: purine ribonucleotide metabolic process2.35E-03
57GO:0002181: cytoplasmic translation2.35E-03
58GO:0045793: positive regulation of cell size2.35E-03
59GO:0015783: GDP-fucose transport2.35E-03
60GO:0034227: tRNA thio-modification2.35E-03
61GO:0042256: mature ribosome assembly2.35E-03
62GO:0090506: axillary shoot meristem initiation2.35E-03
63GO:0006446: regulation of translational initiation3.32E-03
64GO:0006241: CTP biosynthetic process3.41E-03
65GO:0072334: UDP-galactose transmembrane transport3.41E-03
66GO:0009647: skotomorphogenesis3.41E-03
67GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.41E-03
68GO:0006165: nucleoside diphosphate phosphorylation3.41E-03
69GO:0006228: UTP biosynthetic process3.41E-03
70GO:0006164: purine nucleotide biosynthetic process3.41E-03
71GO:0006168: adenine salvage3.41E-03
72GO:0001676: long-chain fatty acid metabolic process3.41E-03
73GO:0046513: ceramide biosynthetic process3.41E-03
74GO:0032877: positive regulation of DNA endoreduplication3.41E-03
75GO:0046836: glycolipid transport3.41E-03
76GO:0006166: purine ribonucleoside salvage3.41E-03
77GO:0070301: cellular response to hydrogen peroxide3.41E-03
78GO:0006183: GTP biosynthetic process4.60E-03
79GO:0010363: regulation of plant-type hypersensitive response4.60E-03
80GO:2000032: regulation of secondary shoot formation4.60E-03
81GO:0009165: nucleotide biosynthetic process4.60E-03
82GO:0051781: positive regulation of cell division4.60E-03
83GO:0042274: ribosomal small subunit biogenesis4.60E-03
84GO:0030150: protein import into mitochondrial matrix4.61E-03
85GO:0006487: protein N-linked glycosylation4.61E-03
86GO:0009116: nucleoside metabolic process4.61E-03
87GO:0009853: photorespiration5.30E-03
88GO:0061077: chaperone-mediated protein folding5.61E-03
89GO:0010117: photoprotection5.92E-03
90GO:1902183: regulation of shoot apical meristem development5.92E-03
91GO:0044209: AMP salvage5.92E-03
92GO:0001731: formation of translation preinitiation complex7.35E-03
93GO:0051568: histone H3-K4 methylation7.35E-03
94GO:0000470: maturation of LSU-rRNA7.35E-03
95GO:0009965: leaf morphogenesis8.53E-03
96GO:1901001: negative regulation of response to salt stress8.89E-03
97GO:0000911: cytokinesis by cell plate formation8.89E-03
98GO:0098655: cation transmembrane transport8.89E-03
99GO:0000245: spliceosomal complex assembly8.89E-03
100GO:0009554: megasporogenesis8.89E-03
101GO:1900056: negative regulation of leaf senescence1.05E-02
102GO:0032880: regulation of protein localization1.05E-02
103GO:0048528: post-embryonic root development1.05E-02
104GO:0009690: cytokinin metabolic process1.23E-02
105GO:0006506: GPI anchor biosynthetic process1.23E-02
106GO:0031540: regulation of anthocyanin biosynthetic process1.23E-02
107GO:0022900: electron transport chain1.41E-02
108GO:0010204: defense response signaling pathway, resistance gene-independent1.41E-02
109GO:0009808: lignin metabolic process1.41E-02
110GO:0010206: photosystem II repair1.61E-02
111GO:0006189: 'de novo' IMP biosynthetic process1.61E-02
112GO:0048589: developmental growth1.61E-02
113GO:0009060: aerobic respiration1.61E-02
114GO:0015780: nucleotide-sugar transport1.61E-02
115GO:0009409: response to cold1.69E-02
116GO:0042761: very long-chain fatty acid biosynthetic process1.81E-02
117GO:0010449: root meristem growth1.81E-02
118GO:0009870: defense response signaling pathway, resistance gene-dependent2.02E-02
119GO:0043069: negative regulation of programmed cell death2.02E-02
120GO:0045036: protein targeting to chloroplast2.02E-02
121GO:0016441: posttranscriptional gene silencing2.02E-02
122GO:0006913: nucleocytoplasmic transport2.24E-02
123GO:0048229: gametophyte development2.24E-02
124GO:0010015: root morphogenesis2.24E-02
125GO:0016925: protein sumoylation2.47E-02
126GO:0008361: regulation of cell size2.47E-02
127GO:0006790: sulfur compound metabolic process2.47E-02
128GO:0010043: response to zinc ion2.53E-02
129GO:0009793: embryo development ending in seed dormancy2.59E-02
130GO:0010102: lateral root morphogenesis2.70E-02
131GO:2000028: regulation of photoperiodism, flowering2.70E-02
132GO:0048467: gynoecium development2.95E-02
133GO:0006413: translational initiation3.08E-02
134GO:0034976: response to endoplasmic reticulum stress3.46E-02
135GO:0006406: mRNA export from nucleus3.72E-02
136GO:0006289: nucleotide-excision repair3.72E-02
137GO:0009644: response to high light intensity3.86E-02
138GO:0003333: amino acid transmembrane transport4.27E-02
139GO:0015992: proton transport4.27E-02
140GO:0007005: mitochondrion organization4.55E-02
141GO:0040007: growth4.84E-02
RankGO TermAdjusted P value
1GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
2GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
3GO:0003735: structural constituent of ribosome5.74E-177
4GO:0003729: mRNA binding9.41E-33
5GO:0004298: threonine-type endopeptidase activity2.86E-27
6GO:0019843: rRNA binding7.23E-16
7GO:0008233: peptidase activity1.47E-12
8GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity8.10E-06
9GO:0003746: translation elongation factor activity1.61E-05
10GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.93E-05
11GO:0015288: porin activity5.44E-05
12GO:0008308: voltage-gated anion channel activity7.57E-05
13GO:0008097: 5S rRNA binding1.28E-04
14GO:0004576: oligosaccharyl transferase activity2.18E-04
15GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity3.29E-04
16GO:0031177: phosphopantetheine binding4.58E-04
17GO:0000035: acyl binding6.07E-04
18GO:0004828: serine-tRNA ligase activity6.60E-04
19GO:0047326: inositol tetrakisphosphate 5-kinase activity6.60E-04
20GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity6.60E-04
21GO:0005080: protein kinase C binding6.60E-04
22GO:0090448: glucosinolate:proton symporter activity6.60E-04
23GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity6.60E-04
24GO:0035614: snRNA stem-loop binding6.60E-04
25GO:0000824: inositol tetrakisphosphate 3-kinase activity6.60E-04
26GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process9.63E-04
27GO:0043022: ribosome binding9.63E-04
28GO:0004750: ribulose-phosphate 3-epimerase activity1.42E-03
29GO:0004826: phenylalanine-tRNA ligase activity1.42E-03
30GO:0030619: U1 snRNA binding1.42E-03
31GO:0050291: sphingosine N-acyltransferase activity1.42E-03
32GO:0015173: aromatic amino acid transmembrane transporter activity1.42E-03
33GO:0008253: 5'-nucleotidase activity2.35E-03
34GO:0070181: small ribosomal subunit rRNA binding2.35E-03
35GO:0005457: GDP-fucose transmembrane transporter activity2.35E-03
36GO:0070180: large ribosomal subunit rRNA binding2.35E-03
37GO:0015266: protein channel activity2.94E-03
38GO:0004175: endopeptidase activity3.32E-03
39GO:0003999: adenine phosphoribosyltransferase activity3.41E-03
40GO:0022890: inorganic cation transmembrane transporter activity3.41E-03
41GO:0005460: UDP-glucose transmembrane transporter activity3.41E-03
42GO:0004550: nucleoside diphosphate kinase activity3.41E-03
43GO:0047627: adenylylsulfatase activity3.41E-03
44GO:0017077: oxidative phosphorylation uncoupler activity3.41E-03
45GO:0017089: glycolipid transporter activity3.41E-03
46GO:0004749: ribose phosphate diphosphokinase activity3.41E-03
47GO:0070628: proteasome binding4.60E-03
48GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances4.60E-03
49GO:0010011: auxin binding4.60E-03
50GO:0051861: glycolipid binding4.60E-03
51GO:0005528: FK506 binding4.61E-03
52GO:0005459: UDP-galactose transmembrane transporter activity5.92E-03
53GO:0005275: amine transmembrane transporter activity5.92E-03
54GO:0031386: protein tag5.92E-03
55GO:0003723: RNA binding6.14E-03
56GO:0031593: polyubiquitin binding7.35E-03
57GO:0102391: decanoate--CoA ligase activity8.89E-03
58GO:0005347: ATP transmembrane transporter activity8.89E-03
59GO:0005338: nucleotide-sugar transmembrane transporter activity1.05E-02
60GO:0008121: ubiquinol-cytochrome-c reductase activity1.05E-02
61GO:0008143: poly(A) binding1.05E-02
62GO:0004467: long-chain fatty acid-CoA ligase activity1.05E-02
63GO:0001055: RNA polymerase II activity1.81E-02
64GO:0004129: cytochrome-c oxidase activity2.24E-02
65GO:0046961: proton-transporting ATPase activity, rotational mechanism2.24E-02
66GO:0008794: arsenate reductase (glutaredoxin) activity2.24E-02
67GO:0001054: RNA polymerase I activity2.24E-02
68GO:0044183: protein binding involved in protein folding2.24E-02
69GO:0001056: RNA polymerase III activity2.47E-02
70GO:0000049: tRNA binding2.47E-02
71GO:0050897: cobalt ion binding2.53E-02
72GO:0043130: ubiquitin binding3.72E-02
73GO:0003743: translation initiation factor activity4.08E-02
74GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.27E-02
75GO:0004540: ribonuclease activity4.27E-02
76GO:0003899: DNA-directed 5'-3' RNA polymerase activity4.80E-02
RankGO TermAdjusted P value
1GO:0019774: proteasome core complex, beta-subunit complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0022626: cytosolic ribosome1.75E-128
4GO:0005840: ribosome8.53E-125
5GO:0022625: cytosolic large ribosomal subunit7.25E-104
6GO:0022627: cytosolic small ribosomal subunit9.24E-78
7GO:0005829: cytosol6.47E-47
8GO:0005737: cytoplasm5.88E-41
9GO:0005730: nucleolus5.33E-34
10GO:0005839: proteasome core complex2.86E-27
11GO:0009506: plasmodesma1.89E-25
12GO:0000502: proteasome complex1.95E-24
13GO:0005774: vacuolar membrane1.22E-21
14GO:0015934: large ribosomal subunit4.17E-17
15GO:0005773: vacuole1.27E-13
16GO:0019773: proteasome core complex, alpha-subunit complex2.07E-12
17GO:0016020: membrane5.19E-10
18GO:0015935: small ribosomal subunit2.61E-09
19GO:0005618: cell wall3.99E-09
20GO:0005853: eukaryotic translation elongation factor 1 complex2.66E-07
21GO:0009507: chloroplast8.39E-07
22GO:0005732: small nucleolar ribonucleoprotein complex3.04E-05
23GO:0005741: mitochondrial outer membrane6.64E-05
24GO:0005742: mitochondrial outer membrane translocase complex7.57E-05
25GO:0046930: pore complex7.57E-05
26GO:0005783: endoplasmic reticulum8.09E-05
27GO:0071011: precatalytic spliceosome1.31E-04
28GO:0071013: catalytic step 2 spliceosome2.06E-04
29GO:0005886: plasma membrane2.71E-04
30GO:0019013: viral nucleocapsid3.00E-04
31GO:0008250: oligosaccharyltransferase complex3.29E-04
32GO:0005788: endoplasmic reticulum lumen4.86E-04
33GO:0005758: mitochondrial intermembrane space5.48E-04
34GO:0070469: respiratory chain6.23E-04
35GO:0072546: ER membrane protein complex6.60E-04
36GO:0030686: 90S preribosome6.60E-04
37GO:0005685: U1 snRNP1.40E-03
38GO:0008541: proteasome regulatory particle, lid subcomplex2.25E-03
39GO:0046861: glyoxysomal membrane2.35E-03
40GO:0034719: SMN-Sm protein complex2.35E-03
41GO:0005665: DNA-directed RNA polymerase II, core complex2.58E-03
42GO:0005681: spliceosomal complex2.92E-03
43GO:0005747: mitochondrial respiratory chain complex I3.07E-03
44GO:0033180: proton-transporting V-type ATPase, V1 domain3.41E-03
45GO:1990726: Lsm1-7-Pat1 complex3.41E-03
46GO:0005743: mitochondrial inner membrane3.83E-03
47GO:0005769: early endosome4.16E-03
48GO:0000419: DNA-directed RNA polymerase V complex4.16E-03
49GO:0005682: U5 snRNP4.60E-03
50GO:0009526: plastid envelope4.60E-03
51GO:0016471: vacuolar proton-transporting V-type ATPase complex4.60E-03
52GO:0016593: Cdc73/Paf1 complex4.60E-03
53GO:0045271: respiratory chain complex I5.10E-03
54GO:0005687: U4 snRNP5.92E-03
55GO:0097526: spliceosomal tri-snRNP complex5.92E-03
56GO:0005746: mitochondrial respiratory chain5.92E-03
57GO:0016282: eukaryotic 43S preinitiation complex7.35E-03
58GO:0000974: Prp19 complex7.35E-03
59GO:0005771: multivesicular body7.35E-03
60GO:0005762: mitochondrial large ribosomal subunit8.89E-03
61GO:0033290: eukaryotic 48S preinitiation complex8.89E-03
62GO:0005689: U12-type spliceosomal complex8.89E-03
63GO:0016272: prefoldin complex8.89E-03
64GO:0005688: U6 snRNP1.23E-02
65GO:0071004: U2-type prespliceosome1.23E-02
66GO:0045273: respiratory chain complex II1.23E-02
67GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.23E-02
68GO:0046540: U4/U6 x U5 tri-snRNP complex1.41E-02
69GO:0009514: glyoxysome1.41E-02
70GO:0031901: early endosome membrane1.61E-02
71GO:0031090: organelle membrane1.61E-02
72GO:0005736: DNA-directed RNA polymerase I complex1.61E-02
73GO:0005666: DNA-directed RNA polymerase III complex1.81E-02
74GO:0015030: Cajal body1.81E-02
75GO:0005686: U2 snRNP2.02E-02
76GO:0000418: DNA-directed RNA polymerase IV complex2.02E-02
77GO:0009707: chloroplast outer membrane2.18E-02
78GO:0005852: eukaryotic translation initiation factor 3 complex2.24E-02
79GO:0048471: perinuclear region of cytoplasm2.24E-02
80GO:0031307: integral component of mitochondrial outer membrane2.47E-02
81GO:0005750: mitochondrial respiratory chain complex III2.95E-02
82GO:0005795: Golgi stack3.20E-02
83GO:0042651: thylakoid membrane3.99E-02
84GO:0005622: intracellular3.99E-02
85GO:0031966: mitochondrial membrane4.47E-02
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Gene type



Gene DE type