GO Enrichment Analysis of Co-expressed Genes with
AT5G02090
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 2 | GO:0015827: tryptophan transport | 0.00E+00 |
| 3 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 4 | GO:0015810: aspartate transport | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 1.39E-11 |
| 6 | GO:0010027: thylakoid membrane organization | 5.23E-07 |
| 7 | GO:0018298: protein-chromophore linkage | 9.59E-07 |
| 8 | GO:0009768: photosynthesis, light harvesting in photosystem I | 3.52E-06 |
| 9 | GO:0042549: photosystem II stabilization | 9.58E-06 |
| 10 | GO:0009769: photosynthesis, light harvesting in photosystem II | 1.90E-05 |
| 11 | GO:0010205: photoinhibition | 4.94E-05 |
| 12 | GO:0065002: intracellular protein transmembrane transport | 5.94E-05 |
| 13 | GO:0043686: co-translational protein modification | 5.94E-05 |
| 14 | GO:0043007: maintenance of rDNA | 5.94E-05 |
| 15 | GO:0043953: protein transport by the Tat complex | 5.94E-05 |
| 16 | GO:0009073: aromatic amino acid family biosynthetic process | 7.05E-05 |
| 17 | GO:0009773: photosynthetic electron transport in photosystem I | 7.05E-05 |
| 18 | GO:0009658: chloroplast organization | 7.90E-05 |
| 19 | GO:0035304: regulation of protein dephosphorylation | 1.44E-04 |
| 20 | GO:0018026: peptidyl-lysine monomethylation | 1.44E-04 |
| 21 | GO:0035436: triose phosphate transmembrane transport | 2.46E-04 |
| 22 | GO:0005977: glycogen metabolic process | 2.46E-04 |
| 23 | GO:0009405: pathogenesis | 2.46E-04 |
| 24 | GO:0010021: amylopectin biosynthetic process | 4.78E-04 |
| 25 | GO:0009765: photosynthesis, light harvesting | 4.78E-04 |
| 26 | GO:0015994: chlorophyll metabolic process | 4.78E-04 |
| 27 | GO:0015713: phosphoglycerate transport | 4.78E-04 |
| 28 | GO:0031365: N-terminal protein amino acid modification | 6.05E-04 |
| 29 | GO:0042793: transcription from plastid promoter | 7.40E-04 |
| 30 | GO:0009643: photosynthetic acclimation | 7.40E-04 |
| 31 | GO:0009635: response to herbicide | 7.40E-04 |
| 32 | GO:0030488: tRNA methylation | 8.82E-04 |
| 33 | GO:0009645: response to low light intensity stimulus | 1.03E-03 |
| 34 | GO:0010196: nonphotochemical quenching | 1.03E-03 |
| 35 | GO:0030091: protein repair | 1.18E-03 |
| 36 | GO:0009644: response to high light intensity | 1.27E-03 |
| 37 | GO:0010206: photosystem II repair | 1.52E-03 |
| 38 | GO:0019684: photosynthesis, light reaction | 2.07E-03 |
| 39 | GO:0009767: photosynthetic electron transport chain | 2.47E-03 |
| 40 | GO:0010207: photosystem II assembly | 2.68E-03 |
| 41 | GO:0006302: double-strand break repair | 2.68E-03 |
| 42 | GO:0009416: response to light stimulus | 3.33E-03 |
| 43 | GO:0051321: meiotic cell cycle | 3.81E-03 |
| 44 | GO:0019915: lipid storage | 3.81E-03 |
| 45 | GO:0061077: chaperone-mediated protein folding | 3.81E-03 |
| 46 | GO:0009269: response to desiccation | 3.81E-03 |
| 47 | GO:0019748: secondary metabolic process | 4.05E-03 |
| 48 | GO:0019252: starch biosynthetic process | 5.89E-03 |
| 49 | GO:0009791: post-embryonic development | 5.89E-03 |
| 50 | GO:0071554: cell wall organization or biogenesis | 6.17E-03 |
| 51 | GO:0009567: double fertilization forming a zygote and endosperm | 7.05E-03 |
| 52 | GO:0015995: chlorophyll biosynthetic process | 8.92E-03 |
| 53 | GO:0016311: dephosphorylation | 9.25E-03 |
| 54 | GO:0010218: response to far red light | 1.03E-02 |
| 55 | GO:0010119: regulation of stomatal movement | 1.06E-02 |
| 56 | GO:0006281: DNA repair | 1.07E-02 |
| 57 | GO:0009637: response to blue light | 1.13E-02 |
| 58 | GO:0010114: response to red light | 1.35E-02 |
| 59 | GO:0006364: rRNA processing | 1.67E-02 |
| 60 | GO:0006396: RNA processing | 2.19E-02 |
| 61 | GO:0009845: seed germination | 2.67E-02 |
| 62 | GO:0009790: embryo development | 2.81E-02 |
| 63 | GO:0006979: response to oxidative stress | 3.89E-02 |
| 64 | GO:0048366: leaf development | 4.86E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 2 | GO:0031409: pigment binding | 2.43E-06 |
| 3 | GO:0003959: NADPH dehydrogenase activity | 6.21E-06 |
| 4 | GO:0016168: chlorophyll binding | 2.87E-05 |
| 5 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 5.94E-05 |
| 6 | GO:0010242: oxygen evolving activity | 5.94E-05 |
| 7 | GO:0042586: peptide deformylase activity | 5.94E-05 |
| 8 | GO:0008266: poly(U) RNA binding | 1.10E-04 |
| 9 | GO:0016630: protochlorophyllide reductase activity | 1.44E-04 |
| 10 | GO:0019156: isoamylase activity | 1.44E-04 |
| 11 | GO:0015172: acidic amino acid transmembrane transporter activity | 1.44E-04 |
| 12 | GO:0047746: chlorophyllase activity | 1.44E-04 |
| 13 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 1.44E-04 |
| 14 | GO:0090729: toxin activity | 2.46E-04 |
| 15 | GO:0071917: triose-phosphate transmembrane transporter activity | 2.46E-04 |
| 16 | GO:0004324: ferredoxin-NADP+ reductase activity | 2.46E-04 |
| 17 | GO:0003913: DNA photolyase activity | 2.46E-04 |
| 18 | GO:0015175: neutral amino acid transmembrane transporter activity | 3.57E-04 |
| 19 | GO:0015120: phosphoglycerate transmembrane transporter activity | 4.78E-04 |
| 20 | GO:0016279: protein-lysine N-methyltransferase activity | 4.78E-04 |
| 21 | GO:0004556: alpha-amylase activity | 7.40E-04 |
| 22 | GO:0030145: manganese ion binding | 8.51E-04 |
| 23 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 8.82E-04 |
| 24 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 8.82E-04 |
| 25 | GO:0009881: photoreceptor activity | 1.03E-03 |
| 26 | GO:0004033: aldo-keto reductase (NADP) activity | 1.18E-03 |
| 27 | GO:0005198: structural molecule activity | 1.32E-03 |
| 28 | GO:0008173: RNA methyltransferase activity | 1.35E-03 |
| 29 | GO:0008135: translation factor activity, RNA binding | 1.35E-03 |
| 30 | GO:0071949: FAD binding | 1.52E-03 |
| 31 | GO:0016491: oxidoreductase activity | 2.46E-03 |
| 32 | GO:0005528: FK506 binding | 3.34E-03 |
| 33 | GO:0008408: 3'-5' exonuclease activity | 3.81E-03 |
| 34 | GO:0000287: magnesium ion binding | 5.75E-03 |
| 35 | GO:0016413: O-acetyltransferase activity | 7.65E-03 |
| 36 | GO:0003924: GTPase activity | 1.07E-02 |
| 37 | GO:0003746: translation elongation factor activity | 1.13E-02 |
| 38 | GO:0003993: acid phosphatase activity | 1.17E-02 |
| 39 | GO:0004185: serine-type carboxypeptidase activity | 1.35E-02 |
| 40 | GO:0015293: symporter activity | 1.47E-02 |
| 41 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.51E-02 |
| 42 | GO:0015171: amino acid transmembrane transporter activity | 1.80E-02 |
| 43 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.93E-02 |
| 44 | GO:0015297: antiporter activity | 3.07E-02 |
| 45 | GO:0005525: GTP binding | 3.14E-02 |
| 46 | GO:0005509: calcium ion binding | 3.57E-02 |
| 47 | GO:0042802: identical protein binding | 3.76E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0009534: chloroplast thylakoid | 9.70E-26 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 5.97E-22 |
| 5 | GO:0009507: chloroplast | 9.22E-19 |
| 6 | GO:0009579: thylakoid | 5.16E-14 |
| 7 | GO:0010287: plastoglobule | 2.53E-10 |
| 8 | GO:0009941: chloroplast envelope | 5.80E-10 |
| 9 | GO:0030095: chloroplast photosystem II | 1.61E-06 |
| 10 | GO:0031977: thylakoid lumen | 2.40E-06 |
| 11 | GO:0009570: chloroplast stroma | 4.22E-06 |
| 12 | GO:0009522: photosystem I | 1.12E-05 |
| 13 | GO:0009523: photosystem II | 1.27E-05 |
| 14 | GO:0009543: chloroplast thylakoid lumen | 1.83E-05 |
| 15 | GO:0009538: photosystem I reaction center | 2.51E-05 |
| 16 | GO:0031361: integral component of thylakoid membrane | 5.94E-05 |
| 17 | GO:0000791: euchromatin | 5.94E-05 |
| 18 | GO:0009783: photosystem II antenna complex | 5.94E-05 |
| 19 | GO:0030076: light-harvesting complex | 1.25E-04 |
| 20 | GO:0030870: Mre11 complex | 1.44E-04 |
| 21 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 1.44E-04 |
| 22 | GO:0009654: photosystem II oxygen evolving complex | 1.75E-04 |
| 23 | GO:0033281: TAT protein transport complex | 2.46E-04 |
| 24 | GO:0019898: extrinsic component of membrane | 3.73E-04 |
| 25 | GO:0009517: PSII associated light-harvesting complex II | 4.78E-04 |
| 26 | GO:0000795: synaptonemal complex | 6.05E-04 |
| 27 | GO:0009533: chloroplast stromal thylakoid | 1.03E-03 |
| 28 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.52E-03 |
| 29 | GO:0009508: plastid chromosome | 2.47E-03 |
| 30 | GO:0042651: thylakoid membrane | 3.57E-03 |
| 31 | GO:0000785: chromatin | 6.46E-03 |
| 32 | GO:0031969: chloroplast membrane | 7.26E-03 |
| 33 | GO:0009295: nucleoid | 7.35E-03 |
| 34 | GO:0016021: integral component of membrane | 2.11E-02 |
| 35 | GO:0009706: chloroplast inner membrane | 2.15E-02 |
| 36 | GO:0005874: microtubule | 4.92E-02 |