GO Enrichment Analysis of Co-expressed Genes with
AT5G02050
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 2 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 3 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 4 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 5 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 6 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 7 | GO:0008612: peptidyl-lysine modification to peptidyl-hypusine | 0.00E+00 |
| 8 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 9 | GO:0006364: rRNA processing | 1.97E-17 |
| 10 | GO:0006412: translation | 1.46E-08 |
| 11 | GO:0042254: ribosome biogenesis | 8.20E-07 |
| 12 | GO:0045039: protein import into mitochondrial inner membrane | 5.01E-06 |
| 13 | GO:0010162: seed dormancy process | 6.87E-06 |
| 14 | GO:0009553: embryo sac development | 1.18E-05 |
| 15 | GO:0000460: maturation of 5.8S rRNA | 2.16E-05 |
| 16 | GO:0042273: ribosomal large subunit biogenesis | 2.16E-05 |
| 17 | GO:0000470: maturation of LSU-rRNA | 5.21E-05 |
| 18 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.27E-05 |
| 19 | GO:0019877: diaminopimelate biosynthetic process | 1.67E-04 |
| 20 | GO:0043985: histone H4-R3 methylation | 1.67E-04 |
| 21 | GO:1990258: histone glutamine methylation | 1.67E-04 |
| 22 | GO:0006169: adenosine salvage | 1.67E-04 |
| 23 | GO:0031120: snRNA pseudouridine synthesis | 1.67E-04 |
| 24 | GO:0031118: rRNA pseudouridine synthesis | 1.67E-04 |
| 25 | GO:0000494: box C/D snoRNA 3'-end processing | 1.67E-04 |
| 26 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.78E-04 |
| 27 | GO:0045041: protein import into mitochondrial intermembrane space | 3.78E-04 |
| 28 | GO:0034470: ncRNA processing | 3.78E-04 |
| 29 | GO:0006626: protein targeting to mitochondrion | 4.10E-04 |
| 30 | GO:1902626: assembly of large subunit precursor of preribosome | 6.19E-04 |
| 31 | GO:0042256: mature ribosome assembly | 6.19E-04 |
| 32 | GO:0009944: polarity specification of adaxial/abaxial axis | 6.38E-04 |
| 33 | GO:0007005: mitochondrion organization | 8.40E-04 |
| 34 | GO:0009855: determination of bilateral symmetry | 8.83E-04 |
| 35 | GO:0051131: chaperone-mediated protein complex assembly | 8.83E-04 |
| 36 | GO:0006986: response to unfolded protein | 8.83E-04 |
| 37 | GO:0051085: chaperone mediated protein folding requiring cofactor | 8.83E-04 |
| 38 | GO:0009294: DNA mediated transformation | 9.13E-04 |
| 39 | GO:0009561: megagametogenesis | 9.89E-04 |
| 40 | GO:0051205: protein insertion into membrane | 1.17E-03 |
| 41 | GO:0006479: protein methylation | 1.17E-03 |
| 42 | GO:1900864: mitochondrial RNA modification | 1.17E-03 |
| 43 | GO:0046345: abscisic acid catabolic process | 1.17E-03 |
| 44 | GO:0042274: ribosomal small subunit biogenesis | 1.17E-03 |
| 45 | GO:0016569: covalent chromatin modification | 1.18E-03 |
| 46 | GO:0031167: rRNA methylation | 1.48E-03 |
| 47 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 1.48E-03 |
| 48 | GO:0006461: protein complex assembly | 1.48E-03 |
| 49 | GO:0044209: AMP salvage | 1.48E-03 |
| 50 | GO:0010375: stomatal complex patterning | 1.48E-03 |
| 51 | GO:0016554: cytidine to uridine editing | 1.83E-03 |
| 52 | GO:0042026: protein refolding | 2.19E-03 |
| 53 | GO:0000054: ribosomal subunit export from nucleus | 2.19E-03 |
| 54 | GO:0006458: 'de novo' protein folding | 2.19E-03 |
| 55 | GO:0010374: stomatal complex development | 2.58E-03 |
| 56 | GO:0080186: developmental vegetative growth | 2.58E-03 |
| 57 | GO:0009451: RNA modification | 2.61E-03 |
| 58 | GO:0042255: ribosome assembly | 2.99E-03 |
| 59 | GO:0000028: ribosomal small subunit assembly | 2.99E-03 |
| 60 | GO:0001510: RNA methylation | 3.41E-03 |
| 61 | GO:0001558: regulation of cell growth | 3.41E-03 |
| 62 | GO:0006189: 'de novo' IMP biosynthetic process | 3.86E-03 |
| 63 | GO:1900865: chloroplast RNA modification | 4.33E-03 |
| 64 | GO:0030422: production of siRNA involved in RNA interference | 4.81E-03 |
| 65 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.32E-03 |
| 66 | GO:0006879: cellular iron ion homeostasis | 5.32E-03 |
| 67 | GO:0006457: protein folding | 6.94E-03 |
| 68 | GO:0010030: positive regulation of seed germination | 7.50E-03 |
| 69 | GO:0046686: response to cadmium ion | 8.02E-03 |
| 70 | GO:0030150: protein import into mitochondrial matrix | 8.70E-03 |
| 71 | GO:0000027: ribosomal large subunit assembly | 8.70E-03 |
| 72 | GO:0051302: regulation of cell division | 9.33E-03 |
| 73 | GO:0061077: chaperone-mediated protein folding | 9.97E-03 |
| 74 | GO:0016226: iron-sulfur cluster assembly | 1.06E-02 |
| 75 | GO:0071215: cellular response to abscisic acid stimulus | 1.13E-02 |
| 76 | GO:0008033: tRNA processing | 1.34E-02 |
| 77 | GO:0010501: RNA secondary structure unwinding | 1.34E-02 |
| 78 | GO:0000413: protein peptidyl-prolyl isomerization | 1.34E-02 |
| 79 | GO:0010197: polar nucleus fusion | 1.41E-02 |
| 80 | GO:0009960: endosperm development | 1.41E-02 |
| 81 | GO:0006413: translational initiation | 1.43E-02 |
| 82 | GO:0080156: mitochondrial mRNA modification | 1.64E-02 |
| 83 | GO:0016032: viral process | 1.72E-02 |
| 84 | GO:0009735: response to cytokinin | 1.76E-02 |
| 85 | GO:0016049: cell growth | 2.48E-02 |
| 86 | GO:0048527: lateral root development | 2.85E-02 |
| 87 | GO:0006099: tricarboxylic acid cycle | 3.14E-02 |
| 88 | GO:0006414: translational elongation | 3.24E-02 |
| 89 | GO:0045892: negative regulation of transcription, DNA-templated | 3.58E-02 |
| 90 | GO:0000154: rRNA modification | 3.96E-02 |
| 91 | GO:0009408: response to heat | 4.34E-02 |
| 92 | GO:0009793: embryo development ending in seed dormancy | 4.69E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034038: deoxyhypusine synthase activity | 0.00E+00 |
| 2 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 3 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 4 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 5 | GO:0003723: RNA binding | 8.42E-17 |
| 6 | GO:0003735: structural constituent of ribosome | 1.24E-12 |
| 7 | GO:0000166: nucleotide binding | 8.92E-11 |
| 8 | GO:0030515: snoRNA binding | 6.74E-09 |
| 9 | GO:0004407: histone deacetylase activity | 6.22E-07 |
| 10 | GO:0004001: adenosine kinase activity | 1.67E-04 |
| 11 | GO:0048037: cofactor binding | 1.67E-04 |
| 12 | GO:1990259: histone-glutamine methyltransferase activity | 1.67E-04 |
| 13 | GO:0042134: rRNA primary transcript binding | 1.67E-04 |
| 14 | GO:0004638: phosphoribosylaminoimidazole carboxylase activity | 1.67E-04 |
| 15 | GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase | 1.67E-04 |
| 16 | GO:0008026: ATP-dependent helicase activity | 1.82E-04 |
| 17 | GO:0001055: RNA polymerase II activity | 2.29E-04 |
| 18 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.00E-04 |
| 19 | GO:0001054: RNA polymerase I activity | 3.13E-04 |
| 20 | GO:0044183: protein binding involved in protein folding | 3.13E-04 |
| 21 | GO:0001056: RNA polymerase III activity | 3.60E-04 |
| 22 | GO:0050897: cobalt ion binding | 3.64E-04 |
| 23 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.78E-04 |
| 24 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.78E-04 |
| 25 | GO:0036455: iron-sulfur transferase activity | 3.78E-04 |
| 26 | GO:0043021: ribonucleoprotein complex binding | 3.78E-04 |
| 27 | GO:0003746: translation elongation factor activity | 4.10E-04 |
| 28 | GO:0070181: small ribosomal subunit rRNA binding | 6.19E-04 |
| 29 | GO:0008649: rRNA methyltransferase activity | 6.19E-04 |
| 30 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.23E-04 |
| 31 | GO:0043023: ribosomal large subunit binding | 8.83E-04 |
| 32 | GO:0051082: unfolded protein binding | 1.27E-03 |
| 33 | GO:0008198: ferrous iron binding | 1.48E-03 |
| 34 | GO:0019843: rRNA binding | 1.69E-03 |
| 35 | GO:0005507: copper ion binding | 1.99E-03 |
| 36 | GO:0008235: metalloexopeptidase activity | 2.58E-03 |
| 37 | GO:0043022: ribosome binding | 2.99E-03 |
| 38 | GO:0000049: tRNA binding | 5.84E-03 |
| 39 | GO:0009982: pseudouridine synthase activity | 6.38E-03 |
| 40 | GO:0003729: mRNA binding | 7.40E-03 |
| 41 | GO:0051087: chaperone binding | 9.33E-03 |
| 42 | GO:0004519: endonuclease activity | 1.06E-02 |
| 43 | GO:0016787: hydrolase activity | 1.39E-02 |
| 44 | GO:0004527: exonuclease activity | 1.41E-02 |
| 45 | GO:0003743: translation initiation factor activity | 1.79E-02 |
| 46 | GO:0008168: methyltransferase activity | 2.29E-02 |
| 47 | GO:0004721: phosphoprotein phosphatase activity | 2.39E-02 |
| 48 | GO:0004004: ATP-dependent RNA helicase activity | 2.39E-02 |
| 49 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 3.14E-02 |
| 50 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.34E-02 |
| 51 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.86E-02 |
| 52 | GO:0005198: structural molecule activity | 3.96E-02 |
| 53 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.07E-02 |
| 54 | GO:0003676: nucleic acid binding | 4.16E-02 |
| 55 | GO:0003924: GTPase activity | 4.34E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 3 | GO:0034455: t-UTP complex | 0.00E+00 |
| 4 | GO:0005730: nucleolus | 3.28E-41 |
| 5 | GO:0032040: small-subunit processome | 4.98E-14 |
| 6 | GO:0005840: ribosome | 4.92E-10 |
| 7 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 5.83E-08 |
| 8 | GO:0030687: preribosome, large subunit precursor | 1.19E-06 |
| 9 | GO:0022625: cytosolic large ribosomal subunit | 1.91E-06 |
| 10 | GO:0022626: cytosolic ribosome | 3.24E-06 |
| 11 | GO:0015030: Cajal body | 5.17E-06 |
| 12 | GO:0005634: nucleus | 8.67E-06 |
| 13 | GO:0005834: heterotrimeric G-protein complex | 9.43E-06 |
| 14 | GO:0005759: mitochondrial matrix | 3.74E-05 |
| 15 | GO:0031428: box C/D snoRNP complex | 5.21E-05 |
| 16 | GO:0005829: cytosol | 8.14E-05 |
| 17 | GO:0022627: cytosolic small ribosomal subunit | 8.59E-05 |
| 18 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 1.67E-04 |
| 19 | GO:0005736: DNA-directed RNA polymerase I complex | 1.91E-04 |
| 20 | GO:0005666: DNA-directed RNA polymerase III complex | 2.29E-04 |
| 21 | GO:0000418: DNA-directed RNA polymerase IV complex | 2.70E-04 |
| 22 | GO:0005743: mitochondrial inner membrane | 3.41E-04 |
| 23 | GO:0005665: DNA-directed RNA polymerase II, core complex | 3.60E-04 |
| 24 | GO:0015934: large ribosomal subunit | 3.64E-04 |
| 25 | GO:0070545: PeBoW complex | 3.78E-04 |
| 26 | GO:0019013: viral nucleocapsid | 4.10E-04 |
| 27 | GO:0005739: mitochondrion | 5.50E-04 |
| 28 | GO:0000419: DNA-directed RNA polymerase V complex | 5.76E-04 |
| 29 | GO:0005758: mitochondrial intermembrane space | 6.38E-04 |
| 30 | GO:0015935: small ribosomal subunit | 7.70E-04 |
| 31 | GO:0031429: box H/ACA snoRNP complex | 8.83E-04 |
| 32 | GO:0005747: mitochondrial respiratory chain complex I | 1.05E-03 |
| 33 | GO:0005682: U5 snRNP | 1.17E-03 |
| 34 | GO:0005687: U4 snRNP | 1.48E-03 |
| 35 | GO:0005654: nucleoplasm | 1.63E-03 |
| 36 | GO:0030529: intracellular ribonucleoprotein complex | 2.18E-03 |
| 37 | GO:0016363: nuclear matrix | 2.19E-03 |
| 38 | GO:0034399: nuclear periphery | 2.99E-03 |
| 39 | GO:0071004: U2-type prespliceosome | 2.99E-03 |
| 40 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 3.41E-03 |
| 41 | GO:0005742: mitochondrial outer membrane translocase complex | 3.41E-03 |
| 42 | GO:0005774: vacuolar membrane | 3.73E-03 |
| 43 | GO:0005763: mitochondrial small ribosomal subunit | 3.86E-03 |
| 44 | GO:0005685: U1 snRNP | 3.86E-03 |
| 45 | GO:0005686: U2 snRNP | 4.81E-03 |
| 46 | GO:0005618: cell wall | 4.99E-03 |
| 47 | GO:0071013: catalytic step 2 spliceosome | 5.32E-03 |
| 48 | GO:0005852: eukaryotic translation initiation factor 3 complex | 5.32E-03 |
| 49 | GO:0005773: vacuole | 9.34E-03 |
| 50 | GO:0005732: small nucleolar ribonucleoprotein complex | 9.65E-03 |
| 51 | GO:0009506: plasmodesma | 1.18E-02 |
| 52 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.20E-02 |
| 53 | GO:0016592: mediator complex | 1.72E-02 |