co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010046: response to mycotoxin	0.00E+00
2	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
3	GO:0019593: mannitol biosynthetic process	0.00E+00
4	GO:0006203: dGTP catabolic process	0.00E+00
5	GO:0070328: triglyceride homeostasis	0.00E+00
6	GO:0042353: fucose biosynthetic process	0.00E+00
7	GO:0055091: phospholipid homeostasis	0.00E+00
8	GO:0009873: ethylene-activated signaling pathway	5.09E-06
9	GO:0010200: response to chitin	6.44E-05
10	GO:0009611: response to wounding	1.13E-04
11	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.49E-04
12	GO:0045489: pectin biosynthetic process	1.59E-04
13	GO:2000070: regulation of response to water deprivation	1.91E-04
14	GO:0030974: thiamine pyrophosphate transport	2.20E-04
15	GO:0006680: glucosylceramide catabolic process	2.20E-04
16	GO:0009609: response to symbiotic bacterium	2.20E-04
17	GO:0046938: phytochelatin biosynthetic process	2.20E-04
18	GO:0051180: vitamin transport	2.20E-04
19	GO:0009624: response to nematode	3.17E-04
20	GO:2000280: regulation of root development	3.41E-04
21	GO:0052544: defense response by callose deposition in cell wall	4.63E-04
22	GO:0015786: UDP-glucose transport	4.90E-04
23	GO:0010507: negative regulation of autophagy	4.90E-04
24	GO:0031407: oxylipin metabolic process	4.90E-04
25	GO:0010289: homogalacturonan biosynthetic process	4.90E-04
26	GO:0055088: lipid homeostasis	4.90E-04
27	GO:2000030: regulation of response to red or far red light	4.90E-04
28	GO:0006898: receptor-mediated endocytosis	4.90E-04
29	GO:0015893: drug transport	4.90E-04
30	GO:0045490: pectin catabolic process	7.42E-04
31	GO:0070588: calcium ion transmembrane transport	7.56E-04
32	GO:0009969: xyloglucan biosynthetic process	7.56E-04
33	GO:0016045: detection of bacterium	7.98E-04
34	GO:0010359: regulation of anion channel activity	7.98E-04
35	GO:0010288: response to lead ion	7.98E-04
36	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	7.98E-04
37	GO:0015783: GDP-fucose transport	7.98E-04
38	GO:0010325: raffinose family oligosaccharide biosynthetic process	7.98E-04
39	GO:0080168: abscisic acid transport	7.98E-04
40	GO:0042344: indole glucosinolate catabolic process	7.98E-04
41	GO:0010025: wax biosynthetic process	8.40E-04
42	GO:0009737: response to abscisic acid	9.91E-04
43	GO:0031408: oxylipin biosynthetic process	1.12E-03
44	GO:0010440: stomatal lineage progression	1.14E-03
45	GO:0055089: fatty acid homeostasis	1.14E-03
46	GO:0072334: UDP-galactose transmembrane transport	1.14E-03
47	GO:0015700: arsenite transport	1.14E-03
48	GO:0042538: hyperosmotic salinity response	1.22E-03
49	GO:0042991: transcription factor import into nucleus	1.51E-03
50	GO:1902347: response to strigolactone	1.51E-03
51	GO:0009694: jasmonic acid metabolic process	1.51E-03
52	GO:0046345: abscisic acid catabolic process	1.51E-03
53	GO:0022622: root system development	1.51E-03
54	GO:0006873: cellular ion homeostasis	1.93E-03
55	GO:0048497: maintenance of floral organ identity	1.93E-03
56	GO:0006665: sphingolipid metabolic process	1.93E-03
57	GO:0032957: inositol trisphosphate metabolic process	1.93E-03
58	GO:0048359: mucilage metabolic process involved in seed coat development	1.93E-03
59	GO:0009823: cytokinin catabolic process	1.93E-03
60	GO:0042545: cell wall modification	2.01E-03
61	GO:0009414: response to water deprivation	2.02E-03
62	GO:0010193: response to ozone	2.23E-03
63	GO:1900425: negative regulation of defense response to bacterium	2.38E-03
64	GO:0006751: glutathione catabolic process	2.38E-03
65	GO:0010256: endomembrane system organization	2.38E-03
66	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.86E-03
67	GO:0010555: response to mannitol	2.86E-03
68	GO:1902074: response to salt	3.36E-03
69	GO:0010103: stomatal complex morphogenesis	3.36E-03
70	GO:0032880: regulation of protein localization	3.36E-03
71	GO:0030497: fatty acid elongation	3.36E-03
72	GO:0009751: response to salicylic acid	3.51E-03
73	GO:0009690: cytokinin metabolic process	3.90E-03
74	GO:0007155: cell adhesion	3.90E-03
75	GO:0009827: plant-type cell wall modification	4.47E-03
76	GO:0006811: ion transport	4.61E-03
77	GO:0006470: protein dephosphorylation	4.96E-03
78	GO:0015780: nucleotide-sugar transport	5.06E-03
79	GO:0098656: anion transmembrane transport	5.06E-03
80	GO:0046685: response to arsenic-containing substance	5.06E-03
81	GO:0016051: carbohydrate biosynthetic process	5.30E-03
82	GO:0048268: clathrin coat assembly	5.68E-03
83	GO:0042761: very long-chain fatty acid biosynthetic process	5.68E-03
84	GO:0009641: shade avoidance	6.32E-03
85	GO:0019538: protein metabolic process	6.32E-03
86	GO:0055062: phosphate ion homeostasis	6.32E-03
87	GO:0010015: root morphogenesis	6.98E-03
88	GO:0000038: very long-chain fatty acid metabolic process	6.98E-03
89	GO:0071555: cell wall organization	7.40E-03
90	GO:0010105: negative regulation of ethylene-activated signaling pathway	7.68E-03
91	GO:0071365: cellular response to auxin stimulus	7.68E-03
92	GO:0006970: response to osmotic stress	8.01E-03
93	GO:0018107: peptidyl-threonine phosphorylation	8.39E-03
94	GO:0005986: sucrose biosynthetic process	8.39E-03
95	GO:2000012: regulation of auxin polar transport	8.39E-03
96	GO:0009833: plant-type primary cell wall biogenesis	1.07E-02
97	GO:2000377: regulation of reactive oxygen species metabolic process	1.15E-02
98	GO:0009863: salicylic acid mediated signaling pathway	1.15E-02
99	GO:0009695: jasmonic acid biosynthetic process	1.23E-02
100	GO:0009409: response to cold	1.25E-02
101	GO:0016998: cell wall macromolecule catabolic process	1.32E-02
102	GO:0009269: response to desiccation	1.32E-02
103	GO:0031348: negative regulation of defense response	1.40E-02
104	GO:0001944: vasculature development	1.49E-02
105	GO:0048443: stamen development	1.58E-02
106	GO:0019722: calcium-mediated signaling	1.58E-02
107	GO:0008284: positive regulation of cell proliferation	1.68E-02
108	GO:0000271: polysaccharide biosynthetic process	1.77E-02
109	GO:0042631: cellular response to water deprivation	1.77E-02
110	GO:0042335: cuticle development	1.77E-02
111	GO:0010268: brassinosteroid homeostasis	1.87E-02
112	GO:0009958: positive gravitropism	1.87E-02
113	GO:0006520: cellular amino acid metabolic process	1.87E-02
114	GO:0008654: phospholipid biosynthetic process	2.07E-02
115	GO:0006633: fatty acid biosynthetic process	2.07E-02
116	GO:0006355: regulation of transcription, DNA-templated	2.11E-02
117	GO:0000302: response to reactive oxygen species	2.17E-02
118	GO:0016132: brassinosteroid biosynthetic process	2.17E-02
119	GO:0010150: leaf senescence	2.28E-02
120	GO:0007623: circadian rhythm	2.28E-02
121	GO:0016125: sterol metabolic process	2.49E-02
122	GO:0019760: glucosinolate metabolic process	2.49E-02
123	GO:0009639: response to red or far red light	2.49E-02
124	GO:0006979: response to oxidative stress	2.50E-02
125	GO:0007267: cell-cell signaling	2.60E-02
126	GO:0007166: cell surface receptor signaling pathway	2.61E-02
127	GO:0010468: regulation of gene expression	2.72E-02
128	GO:0030154: cell differentiation	2.80E-02
129	GO:0010029: regulation of seed germination	2.94E-02
130	GO:0009816: defense response to bacterium, incompatible interaction	2.94E-02
131	GO:0006351: transcription, DNA-templated	3.00E-02
132	GO:0009627: systemic acquired resistance	3.05E-02
133	GO:0006974: cellular response to DNA damage stimulus	3.05E-02
134	GO:0010411: xyloglucan metabolic process	3.17E-02
135	GO:0030244: cellulose biosynthetic process	3.41E-02
136	GO:0016310: phosphorylation	3.42E-02
137	GO:0048767: root hair elongation	3.53E-02
138	GO:0009834: plant-type secondary cell wall biogenesis	3.66E-02
139	GO:0048527: lateral root development	3.78E-02
140	GO:0010119: regulation of stomatal movement	3.78E-02
141	GO:0055085: transmembrane transport	4.33E-02
142	GO:0006839: mitochondrial transport	4.43E-02
143	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.51E-02
144	GO:0005975: carbohydrate metabolic process	4.53E-02
145	GO:0006897: endocytosis	4.56E-02
146	GO:0006631: fatty acid metabolic process	4.56E-02
147	GO:0006468: protein phosphorylation	4.61E-02
148	GO:0046686: response to cadmium ion	4.70E-02
149	GO:0051707: response to other organism	4.83E-02
150	GO:0009640: photomorphogenesis	4.83E-02
151	GO:0008283: cell proliferation	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0042171: lysophosphatidic acid acyltransferase activity	0.00E+00
2	GO:0019177: dihydroneopterin triphosphate pyrophosphohydrolase activity	0.00E+00
3	GO:0035539: 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity	0.00E+00
4	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
5	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
6	GO:0070566: adenylyltransferase activity	0.00E+00
7	GO:0008413: 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity	0.00E+00
8	GO:0016629: 12-oxophytodienoate reductase activity	2.28E-06
9	GO:0009922: fatty acid elongase activity	5.56E-05
10	GO:0004348: glucosylceramidase activity	2.20E-04
11	GO:0071992: phytochelatin transmembrane transporter activity	2.20E-04
12	GO:0090422: thiamine pyrophosphate transporter activity	2.20E-04
13	GO:0046870: cadmium ion binding	2.20E-04
14	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	2.20E-04
15	GO:0090440: abscisic acid transporter activity	2.20E-04
16	GO:0017022: myosin binding	4.90E-04
17	GO:0004103: choline kinase activity	4.90E-04
18	GO:0001047: core promoter binding	4.90E-04
19	GO:0017040: ceramidase activity	4.90E-04
20	GO:0003839: gamma-glutamylcyclotransferase activity	4.90E-04
21	GO:0008083: growth factor activity	6.76E-04
22	GO:0005457: GDP-fucose transmembrane transporter activity	7.98E-04
23	GO:0047325: inositol tetrakisphosphate 1-kinase activity	7.98E-04
24	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	7.98E-04
25	GO:0047274: galactinol-sucrose galactosyltransferase activity	7.98E-04
26	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	7.98E-04
27	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	8.40E-04
28	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	8.40E-04
29	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	8.40E-04
30	GO:0003883: CTP synthase activity	1.14E-03
31	GO:0005460: UDP-glucose transmembrane transporter activity	1.14E-03
32	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.14E-03
33	GO:0033843: xyloglucan 6-xylosyltransferase activity	1.14E-03
34	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	1.14E-03
35	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.22E-03
36	GO:0008514: organic anion transmembrane transporter activity	1.44E-03
37	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.51E-03
38	GO:0045330: aspartyl esterase activity	1.52E-03
39	GO:0004623: phospholipase A2 activity	1.93E-03
40	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.93E-03
41	GO:0005459: UDP-galactose transmembrane transporter activity	1.93E-03
42	GO:0019139: cytokinin dehydrogenase activity	1.93E-03
43	GO:0030599: pectinesterase activity	1.94E-03
44	GO:0010181: FMN binding	1.95E-03
45	GO:0000210: NAD+ diphosphatase activity	2.38E-03
46	GO:0016758: transferase activity, transferring hexosyl groups	2.69E-03
47	GO:0043565: sequence-specific DNA binding	2.98E-03
48	GO:0019899: enzyme binding	3.36E-03
49	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.82E-03
50	GO:0005516: calmodulin binding	4.41E-03
51	GO:0008308: voltage-gated anion channel activity	4.47E-03
52	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	6.32E-03
53	GO:0005545: 1-phosphatidylinositol binding	6.32E-03
54	GO:0004713: protein tyrosine kinase activity	6.32E-03
55	GO:0005315: inorganic phosphate transmembrane transporter activity	8.39E-03
56	GO:0005262: calcium channel activity	8.39E-03
57	GO:0005388: calcium-transporting ATPase activity	8.39E-03
58	GO:0008146: sulfotransferase activity	9.90E-03
59	GO:0004857: enzyme inhibitor activity	1.15E-02
60	GO:0051087: chaperone binding	1.23E-02
61	GO:0016301: kinase activity	1.25E-02
62	GO:0004707: MAP kinase activity	1.32E-02
63	GO:0016746: transferase activity, transferring acyl groups	1.35E-02
64	GO:0004722: protein serine/threonine phosphatase activity	1.36E-02
65	GO:0030570: pectate lyase activity	1.49E-02
66	GO:0004674: protein serine/threonine kinase activity	1.86E-02
67	GO:0030276: clathrin binding	1.87E-02
68	GO:0015297: antiporter activity	2.18E-02
69	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.60E-02
70	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.60E-02
71	GO:0016413: O-acetyltransferase activity	2.71E-02
72	GO:0016787: hydrolase activity	2.73E-02
73	GO:0003824: catalytic activity	2.83E-02
74	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.29E-02
75	GO:0005096: GTPase activator activity	3.53E-02
76	GO:0015238: drug transmembrane transporter activity	3.53E-02
77	GO:0005524: ATP binding	3.53E-02
78	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.78E-02
79	GO:0003677: DNA binding	4.46E-02
80	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.54E-02
81	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0030133: transport vesicle	4.90E-04
2	GO:0005768: endosome	1.72E-03
3	GO:0030173: integral component of Golgi membrane	2.86E-03
4	GO:0005794: Golgi apparatus	3.10E-03
5	GO:0000139: Golgi membrane	3.86E-03
6	GO:0005802: trans-Golgi network	4.92E-03
7	GO:0016604: nuclear body	5.68E-03
8	GO:0009505: plant-type cell wall	1.10E-02
9	GO:0005905: clathrin-coated pit	1.32E-02
10	GO:0030136: clathrin-coated vesicle	1.68E-02
11	GO:0005770: late endosome	1.87E-02
12	GO:0005622: intracellular	2.03E-02
13	GO:0032580: Golgi cisterna membrane	2.49E-02
14	GO:0005615: extracellular space	2.55E-02
15	GO:0046658: anchored component of plasma membrane	3.02E-02
16	GO:0005618: cell wall	3.05E-02
17	GO:0016021: integral component of membrane	4.13E-02
18	GO:0005886: plasma membrane	4.28E-02
19	GO:0031902: late endosome membrane	4.56E-02