co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
3	GO:0006021: inositol biosynthetic process	5.76E-07
4	GO:0010196: nonphotochemical quenching	3.21E-06
5	GO:0009642: response to light intensity	4.32E-06
6	GO:0010114: response to red light	9.09E-06
7	GO:0015979: photosynthesis	9.65E-06
8	GO:0009773: photosynthetic electron transport in photosystem I	1.33E-05
9	GO:0043085: positive regulation of catalytic activity	1.33E-05
10	GO:0009768: photosynthesis, light harvesting in photosystem I	3.65E-05
11	GO:0097054: L-glutamate biosynthetic process	5.10E-05
12	GO:0006729: tetrahydrobiopterin biosynthetic process	5.10E-05
13	GO:0006662: glycerol ether metabolic process	7.27E-05
14	GO:0006814: sodium ion transport	7.90E-05
15	GO:0090391: granum assembly	9.05E-05
16	GO:0006537: glutamate biosynthetic process	1.36E-04
17	GO:0006020: inositol metabolic process	1.36E-04
18	GO:0015995: chlorophyll biosynthetic process	1.66E-04
19	GO:0055114: oxidation-reduction process	1.83E-04
20	GO:0018298: protein-chromophore linkage	1.85E-04
21	GO:0006109: regulation of carbohydrate metabolic process	1.86E-04
22	GO:0015994: chlorophyll metabolic process	1.86E-04
23	GO:0010109: regulation of photosynthesis	1.86E-04
24	GO:0019676: ammonia assimilation cycle	1.86E-04
25	GO:0010218: response to far red light	2.05E-04
26	GO:0009637: response to blue light	2.37E-04
27	GO:0016123: xanthophyll biosynthetic process	2.40E-04
28	GO:0034599: cellular response to oxidative stress	2.48E-04
29	GO:0046855: inositol phosphate dephosphorylation	2.97E-04
30	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.97E-04
31	GO:0010189: vitamin E biosynthetic process	3.57E-04
32	GO:0071446: cellular response to salicylic acid stimulus	4.19E-04
33	GO:0006605: protein targeting	4.84E-04
34	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.50E-04
35	GO:0010206: photosystem II repair	6.19E-04
36	GO:0009688: abscisic acid biosynthetic process	7.62E-04
37	GO:0006790: sulfur compound metabolic process	9.12E-04
38	GO:0010207: photosystem II assembly	1.07E-03
39	GO:0046854: phosphatidylinositol phosphorylation	1.15E-03
40	GO:0010182: sugar mediated signaling pathway	2.08E-03
41	GO:0009646: response to absence of light	2.18E-03
42	GO:0045454: cell redox homeostasis	2.18E-03
43	GO:0008654: phospholipid biosynthetic process	2.29E-03
44	GO:0010090: trichome morphogenesis	2.61E-03
45	GO:0009408: response to heat	2.67E-03
46	GO:0051607: defense response to virus	2.95E-03
47	GO:0010027: thylakoid membrane organization	3.07E-03
48	GO:0009853: photorespiration	4.32E-03
49	GO:0009416: response to light stimulus	4.70E-03
50	GO:0042542: response to hydrogen peroxide	4.99E-03
51	GO:0009744: response to sucrose	5.13E-03
52	GO:0009644: response to high light intensity	5.42E-03
53	GO:0031347: regulation of defense response	5.86E-03
54	GO:0043086: negative regulation of catalytic activity	7.08E-03
55	GO:0009624: response to nematode	8.05E-03
56	GO:0016036: cellular response to phosphate starvation	1.12E-02
57	GO:0006810: transport	1.40E-02
58	GO:0009658: chloroplast organization	1.61E-02
59	GO:0006970: response to osmotic stress	1.70E-02
60	GO:0044550: secondary metabolite biosynthetic process	1.99E-02
61	GO:0006886: intracellular protein transport	2.18E-02
62	GO:0009793: embryo development ending in seed dormancy	2.21E-02
63	GO:0006629: lipid metabolic process	2.47E-02
64	GO:0009908: flower development	3.47E-02
65	GO:0009735: response to cytokinin	3.49E-02
66	GO:0055085: transmembrane transport	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0045550: geranylgeranyl reductase activity	0.00E+00
4	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
5	GO:0071949: FAD binding	7.20E-06
6	GO:0008047: enzyme activator activity	1.10E-05
7	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.97E-05
8	GO:0016041: glutamate synthase (ferredoxin) activity	1.97E-05
9	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.97E-05
10	GO:0031409: pigment binding	2.85E-05
11	GO:0052832: inositol monophosphate 3-phosphatase activity	5.10E-05
12	GO:0008934: inositol monophosphate 1-phosphatase activity	5.10E-05
13	GO:0052833: inositol monophosphate 4-phosphatase activity	5.10E-05
14	GO:0004512: inositol-3-phosphate synthase activity	5.10E-05
15	GO:0047746: chlorophyllase activity	5.10E-05
16	GO:0047134: protein-disulfide reductase activity	6.11E-05
17	GO:0004791: thioredoxin-disulfide reductase activity	7.90E-05
18	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.05E-05
19	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.07E-04
20	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.36E-04
21	GO:0016851: magnesium chelatase activity	1.36E-04
22	GO:0008508: bile acid:sodium symporter activity	1.36E-04
23	GO:0016168: chlorophyll binding	1.48E-04
24	GO:0051538: 3 iron, 4 sulfur cluster binding	2.40E-04
25	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.57E-04
26	GO:0015035: protein disulfide oxidoreductase activity	5.98E-04
27	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.90E-04
28	GO:0005315: inorganic phosphate transmembrane transporter activity	9.90E-04
29	GO:0031072: heat shock protein binding	9.90E-04
30	GO:0004857: enzyme inhibitor activity	1.32E-03
31	GO:0008514: organic anion transmembrane transporter activity	1.78E-03
32	GO:0003756: protein disulfide isomerase activity	1.78E-03
33	GO:0046872: metal ion binding	3.98E-03
34	GO:0003746: translation elongation factor activity	4.32E-03
35	GO:0015293: symporter activity	5.56E-03
36	GO:0016298: lipase activity	6.46E-03
37	GO:0051082: unfolded protein binding	8.05E-03
38	GO:0015144: carbohydrate transmembrane transporter activity	1.07E-02
39	GO:0005351: sugar:proton symporter activity	1.16E-02
40	GO:0016491: oxidoreductase activity	1.25E-02
41	GO:0005515: protein binding	1.27E-02
42	GO:0042802: identical protein binding	1.40E-02
43	GO:0004497: monooxygenase activity	1.87E-02
44	GO:0016787: hydrolase activity	2.05E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.37E-17
2	GO:0009534: chloroplast thylakoid	2.63E-14
3	GO:0009535: chloroplast thylakoid membrane	5.45E-13
4	GO:0009941: chloroplast envelope	2.93E-11
5	GO:0009570: chloroplast stroma	3.68E-09
6	GO:0009783: photosystem II antenna complex	1.97E-05
7	GO:0009515: granal stacked thylakoid	1.97E-05
8	GO:0009579: thylakoid	7.01E-05
9	GO:0009522: photosystem I	7.90E-05
10	GO:0010007: magnesium chelatase complex	9.05E-05
11	GO:0009517: PSII associated light-harvesting complex II	1.86E-04
12	GO:0009533: chloroplast stromal thylakoid	4.19E-04
13	GO:0009706: chloroplast inner membrane	5.81E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.19E-04
15	GO:0010287: plastoglobule	6.84E-04
16	GO:0005623: cell	7.39E-04
17	GO:0030076: light-harvesting complex	1.15E-03
18	GO:0042651: thylakoid membrane	1.41E-03
19	GO:0031969: chloroplast membrane	1.82E-03
20	GO:0009523: photosystem II	2.29E-03
21	GO:0016020: membrane	2.56E-03
22	GO:0005759: mitochondrial matrix	1.11E-02
23	GO:0016021: integral component of membrane	2.64E-02