Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080050: regulation of seed development0.00E+00
2GO:0042353: fucose biosynthetic process0.00E+00
3GO:0032497: detection of lipopolysaccharide0.00E+00
4GO:0034775: glutathione transmembrane transport0.00E+00
5GO:2000636: positive regulation of primary miRNA processing0.00E+00
6GO:0032499: detection of peptidoglycan0.00E+00
7GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
8GO:2001143: N-methylnicotinate transport0.00E+00
9GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
10GO:0071289: cellular response to nickel ion0.00E+00
11GO:2000630: positive regulation of miRNA metabolic process0.00E+00
12GO:0098755: maintenance of seed dormancy by absisic acid0.00E+00
13GO:2001142: nicotinate transport0.00E+00
14GO:0010200: response to chitin1.40E-17
15GO:0006468: protein phosphorylation1.10E-12
16GO:0006952: defense response5.35E-08
17GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response6.38E-08
18GO:0002679: respiratory burst involved in defense response3.23E-07
19GO:0042742: defense response to bacterium4.93E-06
20GO:0006955: immune response1.09E-05
21GO:0006470: protein dephosphorylation1.91E-05
22GO:0007166: cell surface receptor signaling pathway1.91E-05
23GO:0042344: indole glucosinolate catabolic process2.51E-05
24GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway2.51E-05
25GO:0051865: protein autoubiquitination3.20E-05
26GO:0048544: recognition of pollen4.89E-05
27GO:0009737: response to abscisic acid1.35E-04
28GO:0010337: regulation of salicylic acid metabolic process2.14E-04
29GO:0010555: response to mannitol2.88E-04
30GO:2000067: regulation of root morphogenesis2.88E-04
31GO:0045087: innate immune response3.02E-04
32GO:0046938: phytochelatin biosynthetic process4.02E-04
33GO:0030974: thiamine pyrophosphate transport4.02E-04
34GO:1902478: negative regulation of defense response to bacterium, incompatible interaction4.02E-04
35GO:0080157: regulation of plant-type cell wall organization or biogenesis4.02E-04
36GO:0050691: regulation of defense response to virus by host4.02E-04
37GO:0006680: glucosylceramide catabolic process4.02E-04
38GO:0032491: detection of molecule of fungal origin4.02E-04
39GO:0010726: positive regulation of hydrogen peroxide metabolic process4.02E-04
40GO:0051180: vitamin transport4.02E-04
41GO:0045010: actin nucleation4.66E-04
42GO:0046777: protein autophosphorylation5.18E-04
43GO:0007186: G-protein coupled receptor signaling pathway5.69E-04
44GO:0002229: defense response to oomycetes6.76E-04
45GO:2000280: regulation of root development8.05E-04
46GO:0009617: response to bacterium8.22E-04
47GO:0015893: drug transport8.71E-04
48GO:0052542: defense response by callose deposition8.71E-04
49GO:0002221: pattern recognition receptor signaling pathway8.71E-04
50GO:0046939: nucleotide phosphorylation8.71E-04
51GO:0042754: negative regulation of circadian rhythm8.71E-04
52GO:0035556: intracellular signal transduction1.01E-03
53GO:0052544: defense response by callose deposition in cell wall1.08E-03
54GO:0009750: response to fructose1.08E-03
55GO:0009816: defense response to bacterium, incompatible interaction1.15E-03
56GO:0006598: polyamine catabolic process1.41E-03
57GO:0045793: positive regulation of cell size1.41E-03
58GO:0080168: abscisic acid transport1.41E-03
59GO:0008219: cell death1.50E-03
60GO:0009651: response to salt stress1.65E-03
61GO:0070588: calcium ion transmembrane transport1.76E-03
62GO:0015700: arsenite transport2.04E-03
63GO:0015696: ammonium transport2.04E-03
64GO:0071323: cellular response to chitin2.04E-03
65GO:0034219: carbohydrate transmembrane transport2.04E-03
66GO:0043207: response to external biotic stimulus2.04E-03
67GO:0030100: regulation of endocytosis2.04E-03
68GO:0033014: tetrapyrrole biosynthetic process2.04E-03
69GO:0009863: salicylic acid mediated signaling pathway2.18E-03
70GO:0009695: jasmonic acid biosynthetic process2.41E-03
71GO:0071219: cellular response to molecule of bacterial origin2.74E-03
72GO:0034440: lipid oxidation2.74E-03
73GO:1902347: response to strigolactone2.74E-03
74GO:0080142: regulation of salicylic acid biosynthetic process2.74E-03
75GO:0046345: abscisic acid catabolic process2.74E-03
76GO:0009652: thigmotropism2.74E-03
77GO:0045727: positive regulation of translation2.74E-03
78GO:0072488: ammonium transmembrane transport2.74E-03
79GO:0010107: potassium ion import2.74E-03
80GO:0009611: response to wounding3.21E-03
81GO:0006817: phosphate ion transport3.44E-03
82GO:0030041: actin filament polymerization3.51E-03
83GO:0045487: gibberellin catabolic process3.51E-03
84GO:0009164: nucleoside catabolic process3.51E-03
85GO:0006979: response to oxidative stress4.26E-03
86GO:0009960: endosperm development4.34E-03
87GO:0047484: regulation of response to osmotic stress4.35E-03
88GO:1900425: negative regulation of defense response to bacterium4.35E-03
89GO:0010942: positive regulation of cell death4.35E-03
90GO:0006751: glutathione catabolic process4.35E-03
91GO:0010256: endomembrane system organization4.35E-03
92GO:0048317: seed morphogenesis4.35E-03
93GO:0009749: response to glucose5.01E-03
94GO:0080113: regulation of seed growth5.24E-03
95GO:0080086: stamen filament development5.24E-03
96GO:1901001: negative regulation of response to salt stress5.24E-03
97GO:0010193: response to ozone5.36E-03
98GO:0009620: response to fungus5.73E-03
99GO:0006970: response to osmotic stress6.17E-03
100GO:0070370: cellular heat acclimation6.19E-03
101GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.19E-03
102GO:0010161: red light signaling pathway6.19E-03
103GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway6.19E-03
104GO:0009639: response to red or far red light6.51E-03
105GO:0006904: vesicle docking involved in exocytosis6.91E-03
106GO:0009742: brassinosteroid mediated signaling pathway6.94E-03
107GO:1900150: regulation of defense response to fungus7.20E-03
108GO:2000070: regulation of response to water deprivation7.20E-03
109GO:0007165: signal transduction7.88E-03
110GO:0009699: phenylpropanoid biosynthetic process8.26E-03
111GO:0009932: cell tip growth8.26E-03
112GO:0090333: regulation of stomatal closure9.38E-03
113GO:0006783: heme biosynthetic process9.38E-03
114GO:0098656: anion transmembrane transport9.38E-03
115GO:0046685: response to arsenic-containing substance9.38E-03
116GO:0090305: nucleic acid phosphodiester bond hydrolysis9.38E-03
117GO:0009845: seed germination9.49E-03
118GO:0009817: defense response to fungus, incompatible interaction1.02E-02
119GO:0007346: regulation of mitotic cell cycle1.06E-02
120GO:0008202: steroid metabolic process1.06E-02
121GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
122GO:0010018: far-red light signaling pathway1.06E-02
123GO:0006782: protoporphyrinogen IX biosynthetic process1.18E-02
124GO:0019538: protein metabolic process1.18E-02
125GO:0030148: sphingolipid biosynthetic process1.30E-02
126GO:0010015: root morphogenesis1.30E-02
127GO:0009682: induced systemic resistance1.30E-02
128GO:0010105: negative regulation of ethylene-activated signaling pathway1.44E-02
129GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.44E-02
130GO:0006887: exocytosis1.54E-02
131GO:0055046: microgametogenesis1.57E-02
132GO:0010468: regulation of gene expression1.62E-02
133GO:0009744: response to sucrose1.67E-02
134GO:0051707: response to other organism1.67E-02
135GO:0002237: response to molecule of bacterial origin1.71E-02
136GO:0048467: gynoecium development1.71E-02
137GO:0034605: cellular response to heat1.71E-02
138GO:0071732: cellular response to nitric oxide1.86E-02
139GO:0009969: xyloglucan biosynthetic process1.86E-02
140GO:0080188: RNA-directed DNA methylation1.86E-02
141GO:0009901: anther dehiscence1.86E-02
142GO:0016567: protein ubiquitination1.88E-02
143GO:0006855: drug transmembrane transport1.95E-02
144GO:0042753: positive regulation of circadian rhythm2.01E-02
145GO:0009409: response to cold2.18E-02
146GO:0031408: oxylipin biosynthetic process2.48E-02
147GO:0051321: meiotic cell cycle2.48E-02
148GO:0016998: cell wall macromolecule catabolic process2.48E-02
149GO:0098542: defense response to other organism2.48E-02
150GO:0016226: iron-sulfur cluster assembly2.64E-02
151GO:0035428: hexose transmembrane transport2.64E-02
152GO:0030433: ubiquitin-dependent ERAD pathway2.64E-02
153GO:0030245: cellulose catabolic process2.64E-02
154GO:0010017: red or far-red light signaling pathway2.64E-02
155GO:0009723: response to ethylene2.70E-02
156GO:0048366: leaf development2.76E-02
157GO:0016310: phosphorylation2.80E-02
158GO:0009686: gibberellin biosynthetic process2.81E-02
159GO:0071369: cellular response to ethylene stimulus2.81E-02
160GO:0040007: growth2.81E-02
161GO:0071215: cellular response to abscisic acid stimulus2.81E-02
162GO:0009626: plant-type hypersensitive response2.84E-02
163GO:0019722: calcium-mediated signaling2.99E-02
164GO:0010089: xylem development2.99E-02
165GO:0010214: seed coat development2.99E-02
166GO:0010584: pollen exine formation2.99E-02
167GO:0009738: abscisic acid-activated signaling pathway3.09E-02
168GO:0042147: retrograde transport, endosome to Golgi3.16E-02
169GO:0009624: response to nematode3.21E-02
170GO:0009555: pollen development3.24E-02
171GO:0009414: response to water deprivation3.27E-02
172GO:0018105: peptidyl-serine phosphorylation3.30E-02
173GO:0010118: stomatal movement3.34E-02
174GO:0048653: anther development3.34E-02
175GO:0042631: cellular response to water deprivation3.34E-02
176GO:0046323: glucose import3.53E-02
177GO:0000398: mRNA splicing, via spliceosome3.70E-02
178GO:0006891: intra-Golgi vesicle-mediated transport4.09E-02
179GO:0009630: gravitropism4.29E-02
180GO:0071281: cellular response to iron ion4.49E-02
181GO:1901657: glycosyl compound metabolic process4.49E-02
182GO:0019760: glucosinolate metabolic process4.69E-02
RankGO TermAdjusted P value
1GO:2001080: chitosan binding0.00E+00
2GO:0090417: N-methylnicotinate transporter activity0.00E+00
3GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
4GO:0090416: nicotinate transporter activity0.00E+00
5GO:0010857: calcium-dependent protein kinase activity0.00E+00
6GO:0004698: calcium-dependent protein kinase C activity0.00E+00
7GO:0005522: profilin binding0.00E+00
8GO:0016301: kinase activity8.53E-14
9GO:0005524: ATP binding6.92E-09
10GO:0004674: protein serine/threonine kinase activity1.07E-07
11GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.01E-05
12GO:0031683: G-protein beta/gamma-subunit complex binding2.51E-05
13GO:0001664: G-protein coupled receptor binding2.51E-05
14GO:0004672: protein kinase activity2.94E-05
15GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity5.48E-05
16GO:0030246: carbohydrate binding1.35E-04
17GO:0004722: protein serine/threonine phosphatase activity1.78E-04
18GO:0005516: calmodulin binding1.90E-04
19GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity4.02E-04
20GO:0015446: ATPase-coupled arsenite transmembrane transporter activity4.02E-04
21GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity4.02E-04
22GO:0004348: glucosylceramidase activity4.02E-04
23GO:0071992: phytochelatin transmembrane transporter activity4.02E-04
24GO:0090440: abscisic acid transporter activity4.02E-04
25GO:0052894: norspermine:oxygen oxidoreductase activity4.02E-04
26GO:0090422: thiamine pyrophosphate transporter activity4.02E-04
27GO:0015085: calcium ion transmembrane transporter activity4.02E-04
28GO:0046870: cadmium ion binding4.02E-04
29GO:1990585: hydroxyproline O-arabinosyltransferase activity8.71E-04
30GO:0017022: myosin binding8.71E-04
31GO:0004103: choline kinase activity8.71E-04
32GO:0008883: glutamyl-tRNA reductase activity8.71E-04
33GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity8.71E-04
34GO:0004721: phosphoprotein phosphatase activity1.32E-03
35GO:0019888: protein phosphatase regulator activity1.40E-03
36GO:0005388: calcium-transporting ATPase activity1.40E-03
37GO:0003840: gamma-glutamyltransferase activity1.41E-03
38GO:0004758: serine C-palmitoyltransferase activity1.41E-03
39GO:0036374: glutathione hydrolase activity1.41E-03
40GO:0046423: allene-oxide cyclase activity1.41E-03
41GO:0004383: guanylate cyclase activity1.41E-03
42GO:0016165: linoleate 13S-lipoxygenase activity1.41E-03
43GO:0046592: polyamine oxidase activity1.41E-03
44GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.80E-03
45GO:0019201: nucleotide kinase activity2.04E-03
46GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.04E-03
47GO:0001653: peptide receptor activity2.04E-03
48GO:0019199: transmembrane receptor protein kinase activity2.74E-03
49GO:0004842: ubiquitin-protein transferase activity3.00E-03
50GO:0008514: organic anion transmembrane transporter activity3.44E-03
51GO:0005546: phosphatidylinositol-4,5-bisphosphate binding3.51E-03
52GO:0018685: alkane 1-monooxygenase activity3.51E-03
53GO:0047631: ADP-ribose diphosphatase activity3.51E-03
54GO:0045431: flavonol synthase activity3.51E-03
55GO:0010294: abscisic acid glucosyltransferase activity3.51E-03
56GO:0000210: NAD+ diphosphatase activity4.35E-03
57GO:0019137: thioglucosidase activity4.35E-03
58GO:0008519: ammonium transmembrane transporter activity4.35E-03
59GO:0046872: metal ion binding5.10E-03
60GO:0004017: adenylate kinase activity5.24E-03
61GO:0019900: kinase binding5.24E-03
62GO:0051020: GTPase binding5.24E-03
63GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides5.24E-03
64GO:0008143: poly(A) binding6.19E-03
65GO:0004143: diacylglycerol kinase activity6.19E-03
66GO:0102425: myricetin 3-O-glucosyltransferase activity6.19E-03
67GO:0102360: daphnetin 3-O-glucosyltransferase activity6.19E-03
68GO:0016621: cinnamoyl-CoA reductase activity6.19E-03
69GO:0003779: actin binding6.20E-03
70GO:0004714: transmembrane receptor protein tyrosine kinase activity7.20E-03
71GO:0047893: flavonol 3-O-glucosyltransferase activity7.20E-03
72GO:0003951: NAD+ kinase activity8.26E-03
73GO:0008142: oxysterol binding8.26E-03
74GO:0004630: phospholipase D activity8.26E-03
75GO:0008970: phosphatidylcholine 1-acylhydrolase activity8.26E-03
76GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity8.26E-03
77GO:0004683: calmodulin-dependent protein kinase activity9.16E-03
78GO:0102483: scopolin beta-glucosidase activity9.16E-03
79GO:0015238: drug transmembrane transporter activity1.07E-02
80GO:0015144: carbohydrate transmembrane transporter activity1.08E-02
81GO:0004713: protein tyrosine kinase activity1.18E-02
82GO:0005351: sugar:proton symporter activity1.26E-02
83GO:0008422: beta-glucosidase activity1.41E-02
84GO:0009055: electron carrier activity1.54E-02
85GO:0005315: inorganic phosphate transmembrane transporter activity1.57E-02
86GO:0008131: primary amine oxidase activity1.71E-02
87GO:0035091: phosphatidylinositol binding1.81E-02
88GO:0008061: chitin binding1.86E-02
89GO:0051119: sugar transmembrane transporter activity1.86E-02
90GO:0004725: protein tyrosine phosphatase activity2.01E-02
91GO:0046982: protein heterodimerization activity2.20E-02
92GO:0004707: MAP kinase activity2.48E-02
93GO:0033612: receptor serine/threonine kinase binding2.48E-02
94GO:0019706: protein-cysteine S-palmitoyltransferase activity2.48E-02
95GO:0008408: 3'-5' exonuclease activity2.48E-02
96GO:0035251: UDP-glucosyltransferase activity2.48E-02
97GO:0031625: ubiquitin protein ligase binding2.50E-02
98GO:0050660: flavin adenine dinucleotide binding2.70E-02
99GO:0022891: substrate-specific transmembrane transporter activity2.81E-02
100GO:0080043: quercetin 3-O-glucosyltransferase activity2.93E-02
101GO:0080044: quercetin 7-O-glucosyltransferase activity2.93E-02
102GO:0005509: calcium ion binding2.97E-02
103GO:0005355: glucose transmembrane transporter activity3.71E-02
104GO:0050662: coenzyme binding3.71E-02
105GO:0004871: signal transducer activity3.90E-02
106GO:0051015: actin filament binding4.49E-02
107GO:0005515: protein binding4.55E-02
108GO:0016791: phosphatase activity4.69E-02
109GO:0003924: GTPase activity4.76E-02
110GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.90E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane1.84E-10
2GO:0005911: cell-cell junction4.02E-04
3GO:0016021: integral component of membrane4.96E-04
4GO:0030133: transport vesicle8.71E-04
5GO:0000159: protein phosphatase type 2A complex1.08E-03
6GO:0070062: extracellular exosome2.04E-03
7GO:0005737: cytoplasm4.02E-03
8GO:0031463: Cul3-RING ubiquitin ligase complex4.35E-03
9GO:0030173: integral component of Golgi membrane5.24E-03
10GO:0000145: exocyst5.73E-03
11GO:0010494: cytoplasmic stress granule9.38E-03
12GO:0016604: nuclear body1.06E-02
13GO:0015030: Cajal body1.06E-02
14GO:0090404: pollen tube tip1.30E-02
15GO:0031902: late endosome membrane1.54E-02
16GO:0043231: intracellular membrane-bounded organelle1.60E-02
17GO:0043234: protein complex2.01E-02
18GO:0005758: mitochondrial intermembrane space2.16E-02
19GO:0005681: spliceosomal complex2.67E-02
20GO:0010008: endosome membrane2.75E-02
21GO:0005834: heterotrimeric G-protein complex2.84E-02
22GO:0005768: endosome2.85E-02
23GO:0030136: clathrin-coated vesicle3.16E-02
24GO:0005770: late endosome3.53E-02
25GO:0032580: Golgi cisterna membrane4.69E-02
26GO:0005778: peroxisomal membrane4.90E-02
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Gene type



Gene DE type