co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071289: cellular response to nickel ion	0.00E+00
2	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
3	GO:1903086: negative regulation of sinapate ester biosynthetic process	0.00E+00
4	GO:0006862: nucleotide transport	0.00E+00
5	GO:2001142: nicotinate transport	0.00E+00
6	GO:0032497: detection of lipopolysaccharide	0.00E+00
7	GO:0080050: regulation of seed development	0.00E+00
8	GO:0042353: fucose biosynthetic process	0.00E+00
9	GO:0034775: glutathione transmembrane transport	0.00E+00
10	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
11	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
12	GO:0010046: response to mycotoxin	0.00E+00
13	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
14	GO:0032499: detection of peptidoglycan	0.00E+00
15	GO:2001143: N-methylnicotinate transport	0.00E+00
16	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
17	GO:0010200: response to chitin	7.78E-16
18	GO:0006468: protein phosphorylation	1.39E-10
19	GO:0042742: defense response to bacterium	1.97E-07
20	GO:0002679: respiratory burst involved in defense response	3.92E-07
21	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	8.25E-06
22	GO:0006955: immune response	1.31E-05
23	GO:0042344: indole glucosinolate catabolic process	2.85E-05
24	GO:0051865: protein autoubiquitination	3.78E-05
25	GO:0006952: defense response	3.92E-05
26	GO:0052544: defense response by callose deposition in cell wall	8.14E-05
27	GO:0070588: calcium ion transmembrane transport	1.74E-04
28	GO:0007166: cell surface receptor signaling pathway	1.85E-04
29	GO:0010337: regulation of salicylic acid metabolic process	2.39E-04
30	GO:0006751: glutathione catabolic process	2.39E-04
31	GO:0009611: response to wounding	3.38E-04
32	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.14E-04
33	GO:0051180: vitamin transport	4.32E-04
34	GO:0010726: positive regulation of hydrogen peroxide metabolic process	4.32E-04
35	GO:0030974: thiamine pyrophosphate transport	4.32E-04
36	GO:0046938: phytochelatin biosynthetic process	4.32E-04
37	GO:0080157: regulation of plant-type cell wall organization or biogenesis	4.32E-04
38	GO:0050691: regulation of defense response to virus by host	4.32E-04
39	GO:0006680: glucosylceramide catabolic process	4.32E-04
40	GO:0032491: detection of molecule of fungal origin	4.32E-04
41	GO:1900384: regulation of flavonol biosynthetic process	4.32E-04
42	GO:2000070: regulation of response to water deprivation	5.18E-04
43	GO:0045010: actin nucleation	5.18E-04
44	GO:0048544: recognition of pollen	6.47E-04
45	GO:0046685: response to arsenic-containing substance	7.56E-04
46	GO:0002229: defense response to oomycetes	7.72E-04
47	GO:0010193: response to ozone	7.72E-04
48	GO:0010372: positive regulation of gibberellin biosynthetic process	9.33E-04
49	GO:2000030: regulation of response to red or far red light	9.33E-04
50	GO:0006898: receptor-mediated endocytosis	9.33E-04
51	GO:0015893: drug transport	9.33E-04
52	GO:0052542: defense response by callose deposition	9.33E-04
53	GO:0002221: pattern recognition receptor signaling pathway	9.33E-04
54	GO:0046740: transport of virus in host, cell to cell	9.33E-04
55	GO:0046939: nucleotide phosphorylation	9.33E-04
56	GO:0031407: oxylipin metabolic process	9.33E-04
57	GO:0042754: negative regulation of circadian rhythm	9.33E-04
58	GO:0010289: homogalacturonan biosynthetic process	9.33E-04
59	GO:0009617: response to bacterium	9.88E-04
60	GO:0006904: vesicle docking involved in exocytosis	1.06E-03
61	GO:0010015: root morphogenesis	1.19E-03
62	GO:0080168: abscisic acid transport	1.52E-03
63	GO:0070475: rRNA base methylation	1.52E-03
64	GO:0016045: detection of bacterium	1.52E-03
65	GO:0006598: polyamine catabolic process	1.52E-03
66	GO:0010359: regulation of anion channel activity	1.52E-03
67	GO:0010253: UDP-rhamnose biosynthetic process	1.52E-03
68	GO:0045793: positive regulation of cell size	1.52E-03
69	GO:0009737: response to abscisic acid	1.59E-03
70	GO:0008219: cell death	1.71E-03
71	GO:0006970: response to osmotic stress	1.78E-03
72	GO:0034219: carbohydrate transmembrane transport	2.19E-03
73	GO:0043207: response to external biotic stimulus	2.19E-03
74	GO:0033014: tetrapyrrole biosynthetic process	2.19E-03
75	GO:0030100: regulation of endocytosis	2.19E-03
76	GO:0009399: nitrogen fixation	2.19E-03
77	GO:0015696: ammonium transport	2.19E-03
78	GO:0015700: arsenite transport	2.19E-03
79	GO:0071323: cellular response to chitin	2.19E-03
80	GO:0010071: root meristem specification	2.19E-03
81	GO:0045087: innate immune response	2.32E-03
82	GO:0009863: salicylic acid mediated signaling pathway	2.42E-03
83	GO:0046777: protein autophosphorylation	2.57E-03
84	GO:0009695: jasmonic acid biosynthetic process	2.68E-03
85	GO:0006887: exocytosis	2.89E-03
86	GO:0031408: oxylipin biosynthetic process	2.94E-03
87	GO:0072488: ammonium transmembrane transport	2.95E-03
88	GO:0010107: potassium ion import	2.95E-03
89	GO:0006536: glutamate metabolic process	2.95E-03
90	GO:0071219: cellular response to molecule of bacterial origin	2.95E-03
91	GO:0042991: transcription factor import into nucleus	2.95E-03
92	GO:0034440: lipid oxidation	2.95E-03
93	GO:1902347: response to strigolactone	2.95E-03
94	GO:0080142: regulation of salicylic acid biosynthetic process	2.95E-03
95	GO:0009694: jasmonic acid metabolic process	2.95E-03
96	GO:0046345: abscisic acid catabolic process	2.95E-03
97	GO:0009686: gibberellin biosynthetic process	3.51E-03
98	GO:0009164: nucleoside catabolic process	3.78E-03
99	GO:2000762: regulation of phenylpropanoid metabolic process	3.78E-03
100	GO:0030041: actin filament polymerization	3.78E-03
101	GO:0009823: cytokinin catabolic process	3.78E-03
102	GO:0045487: gibberellin catabolic process	3.78E-03
103	GO:0006817: phosphate ion transport	3.82E-03
104	GO:0019722: calcium-mediated signaling	3.82E-03
105	GO:0006470: protein dephosphorylation	4.09E-03
106	GO:0000470: maturation of LSU-rRNA	4.68E-03
107	GO:0048317: seed morphogenesis	4.68E-03
108	GO:0006796: phosphate-containing compound metabolic process	4.68E-03
109	GO:1900425: negative regulation of defense response to bacterium	4.68E-03
110	GO:0010942: positive regulation of cell death	4.68E-03
111	GO:0010256: endomembrane system organization	4.68E-03
112	GO:0009960: endosperm development	4.83E-03
113	GO:0010224: response to UV-B	4.91E-03
114	GO:0009651: response to salt stress	5.52E-03
115	GO:0080113: regulation of seed growth	5.64E-03
116	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	5.64E-03
117	GO:0080086: stamen filament development	5.64E-03
118	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	6.67E-03
119	GO:0010161: red light signaling pathway	6.67E-03
120	GO:0007155: cell adhesion	7.76E-03
121	GO:0006402: mRNA catabolic process	7.76E-03
122	GO:0009690: cytokinin metabolic process	7.76E-03
123	GO:1900150: regulation of defense response to fungus	7.76E-03
124	GO:0010078: maintenance of root meristem identity	7.76E-03
125	GO:0048658: anther wall tapetum development	7.76E-03
126	GO:0010492: maintenance of shoot apical meristem identity	7.76E-03
127	GO:0009742: brassinosteroid mediated signaling pathway	7.95E-03
128	GO:0009699: phenylpropanoid biosynthetic process	8.91E-03
129	GO:0009932: cell tip growth	8.91E-03
130	GO:0006997: nucleus organization	8.91E-03
131	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	9.15E-03
132	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	9.48E-03
133	GO:0098656: anion transmembrane transport	1.01E-02
134	GO:0007165: signal transduction	1.01E-02
135	GO:0090333: regulation of stomatal closure	1.01E-02
136	GO:0006783: heme biosynthetic process	1.01E-02
137	GO:0009845: seed germination	1.09E-02
138	GO:0009817: defense response to fungus, incompatible interaction	1.13E-02
139	GO:0006779: porphyrin-containing compound biosynthetic process	1.14E-02
140	GO:2000280: regulation of root development	1.14E-02
141	GO:0008202: steroid metabolic process	1.14E-02
142	GO:0006782: protoporphyrinogen IX biosynthetic process	1.27E-02
143	GO:0019538: protein metabolic process	1.27E-02
144	GO:0048829: root cap development	1.27E-02
145	GO:0010192: mucilage biosynthetic process	1.27E-02
146	GO:0035556: intracellular signal transduction	1.35E-02
147	GO:0046686: response to cadmium ion	1.36E-02
148	GO:0009682: induced systemic resistance	1.41E-02
149	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.55E-02
150	GO:0071365: cellular response to auxin stimulus	1.55E-02
151	GO:0009751: response to salicylic acid	1.59E-02
152	GO:0006839: mitochondrial transport	1.64E-02
153	GO:0055046: microgametogenesis	1.70E-02
154	GO:0009753: response to jasmonic acid	1.80E-02
155	GO:0034605: cellular response to heat	1.85E-02
156	GO:0002237: response to molecule of bacterial origin	1.85E-02
157	GO:0010468: regulation of gene expression	1.86E-02
158	GO:0009969: xyloglucan biosynthetic process	2.01E-02
159	GO:0080188: RNA-directed DNA methylation	2.01E-02
160	GO:0009901: anther dehiscence	2.01E-02
161	GO:0071732: cellular response to nitric oxide	2.01E-02
162	GO:0031347: regulation of defense response	2.25E-02
163	GO:2000377: regulation of reactive oxygen species metabolic process	2.33E-02
164	GO:0009873: ethylene-activated signaling pathway	2.38E-02
165	GO:0016567: protein ubiquitination	2.39E-02
166	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.47E-02
167	GO:0061077: chaperone-mediated protein folding	2.68E-02
168	GO:0016998: cell wall macromolecule catabolic process	2.68E-02
169	GO:0098542: defense response to other organism	2.68E-02
170	GO:0030245: cellulose catabolic process	2.85E-02
171	GO:0010017: red or far-red light signaling pathway	2.85E-02
172	GO:0030433: ubiquitin-dependent ERAD pathway	2.85E-02
173	GO:0035428: hexose transmembrane transport	2.85E-02
174	GO:0031348: negative regulation of defense response	2.85E-02
175	GO:0071215: cellular response to abscisic acid stimulus	3.04E-02
176	GO:0071369: cellular response to ethylene stimulus	3.04E-02
177	GO:0040007: growth	3.04E-02
178	GO:0048366: leaf development	3.16E-02
179	GO:0009626: plant-type hypersensitive response	3.16E-02
180	GO:0010091: trichome branching	3.22E-02
181	GO:0009306: protein secretion	3.22E-02
182	GO:0010089: xylem development	3.22E-02
183	GO:0010214: seed coat development	3.22E-02
184	GO:0009620: response to fungus	3.26E-02
185	GO:0016310: phosphorylation	3.48E-02
186	GO:0009624: response to nematode	3.57E-02
187	GO:0048653: anther development	3.61E-02
188	GO:0042631: cellular response to water deprivation	3.61E-02
189	GO:0009738: abscisic acid-activated signaling pathway	3.61E-02
190	GO:0000271: polysaccharide biosynthetic process	3.61E-02
191	GO:0080022: primary root development	3.61E-02
192	GO:0010118: stomatal movement	3.61E-02
193	GO:0009555: pollen development	3.79E-02
194	GO:0045489: pectin biosynthetic process	3.81E-02
195	GO:0046323: glucose import	3.81E-02
196	GO:0009414: response to water deprivation	3.90E-02
197	GO:0006979: response to oxidative stress	4.10E-02
198	GO:0009749: response to glucose	4.21E-02
199	GO:0045892: negative regulation of transcription, DNA-templated	4.28E-02
200	GO:0031047: gene silencing by RNA	4.63E-02
201	GO:0071281: cellular response to iron ion	4.85E-02
202	GO:0010090: trichome morphogenesis	4.85E-02
203	GO:1901657: glycosyl compound metabolic process	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
2	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
3	GO:0070566: adenylyltransferase activity	0.00E+00
4	GO:0005522: profilin binding	0.00E+00
5	GO:2001080: chitosan binding	0.00E+00
6	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
7	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
8	GO:0090416: nicotinate transporter activity	0.00E+00
9	GO:0016301: kinase activity	5.54E-11
10	GO:0005524: ATP binding	3.53E-08
11	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	3.92E-07
12	GO:0004674: protein serine/threonine kinase activity	1.19E-06
13	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.40E-05
14	GO:0003840: gamma-glutamyltransferase activity	2.85E-05
15	GO:0036374: glutathione hydrolase activity	2.85E-05
16	GO:0004672: protein kinase activity	1.78E-04
17	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.09E-04
18	GO:0010489: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity	4.32E-04
19	GO:0090422: thiamine pyrophosphate transporter activity	4.32E-04
20	GO:0015085: calcium ion transmembrane transporter activity	4.32E-04
21	GO:0010490: UDP-4-keto-rhamnose-4-keto-reductase activity	4.32E-04
22	GO:0046870: cadmium ion binding	4.32E-04
23	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	4.32E-04
24	GO:0015446: ATPase-coupled arsenite transmembrane transporter activity	4.32E-04
25	GO:0004348: glucosylceramidase activity	4.32E-04
26	GO:0071992: phytochelatin transmembrane transporter activity	4.32E-04
27	GO:0052895: N1-acetylspermine:oxygen oxidoreductase (N1-acetylspermidine-forming) activity	4.32E-04
28	GO:0090440: abscisic acid transporter activity	4.32E-04
29	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	4.32E-04
30	GO:0052894: norspermine:oxygen oxidoreductase activity	4.32E-04
31	GO:0030246: carbohydrate binding	6.72E-04
32	GO:0010280: UDP-L-rhamnose synthase activity	9.33E-04
33	GO:1990585: hydroxyproline O-arabinosyltransferase activity	9.33E-04
34	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	9.33E-04
35	GO:0050377: UDP-glucose 4,6-dehydratase activity	9.33E-04
36	GO:0016629: 12-oxophytodienoate reductase activity	9.33E-04
37	GO:0004103: choline kinase activity	9.33E-04
38	GO:0008883: glutamyl-tRNA reductase activity	9.33E-04
39	GO:0001047: core promoter binding	9.33E-04
40	GO:0008460: dTDP-glucose 4,6-dehydratase activity	9.33E-04
41	GO:0052901: spermine:oxygen oxidoreductase (spermidine-forming) activity	9.33E-04
42	GO:0043565: sequence-specific DNA binding	1.44E-03
43	GO:0046423: allene-oxide cyclase activity	1.52E-03
44	GO:0004383: guanylate cyclase activity	1.52E-03
45	GO:0016165: linoleate 13S-lipoxygenase activity	1.52E-03
46	GO:0046592: polyamine oxidase activity	1.52E-03
47	GO:0005388: calcium-transporting ATPase activity	1.55E-03
48	GO:0019888: protein phosphatase regulator activity	1.55E-03
49	GO:0008131: primary amine oxidase activity	1.75E-03
50	GO:0019201: nucleotide kinase activity	2.19E-03
51	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.19E-03
52	GO:0001653: peptide receptor activity	2.19E-03
53	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	2.19E-03
54	GO:0004351: glutamate decarboxylase activity	2.19E-03
55	GO:0005516: calmodulin binding	2.77E-03
56	GO:0033612: receptor serine/threonine kinase binding	2.94E-03
57	GO:0043015: gamma-tubulin binding	2.95E-03
58	GO:0019199: transmembrane receptor protein kinase activity	2.95E-03
59	GO:0010294: abscisic acid glucosyltransferase activity	3.78E-03
60	GO:0009922: fatty acid elongase activity	3.78E-03
61	GO:0019139: cytokinin dehydrogenase activity	3.78E-03
62	GO:0018685: alkane 1-monooxygenase activity	3.78E-03
63	GO:0047631: ADP-ribose diphosphatase activity	3.78E-03
64	GO:0002020: protease binding	3.78E-03
65	GO:0004356: glutamate-ammonia ligase activity	3.78E-03
66	GO:0045431: flavonol synthase activity	3.78E-03
67	GO:0008514: organic anion transmembrane transporter activity	3.82E-03
68	GO:0000210: NAD+ diphosphatase activity	4.68E-03
69	GO:0019137: thioglucosidase activity	4.68E-03
70	GO:0016462: pyrophosphatase activity	4.68E-03
71	GO:0035673: oligopeptide transmembrane transporter activity	4.68E-03
72	GO:0008519: ammonium transmembrane transporter activity	4.68E-03
73	GO:0004017: adenylate kinase activity	5.64E-03
74	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	5.64E-03
75	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.64E-03
76	GO:0019900: kinase binding	5.64E-03
77	GO:0051020: GTPase binding	5.64E-03
78	GO:0004427: inorganic diphosphatase activity	6.67E-03
79	GO:0016621: cinnamoyl-CoA reductase activity	6.67E-03
80	GO:0019899: enzyme binding	6.67E-03
81	GO:0008143: poly(A) binding	6.67E-03
82	GO:0004143: diacylglycerol kinase activity	6.67E-03
83	GO:0003779: actin binding	7.10E-03
84	GO:0004714: transmembrane receptor protein tyrosine kinase activity	7.76E-03
85	GO:0050660: flavin adenine dinucleotide binding	8.10E-03
86	GO:0008142: oxysterol binding	8.91E-03
87	GO:0003951: NAD+ kinase activity	8.91E-03
88	GO:0003678: DNA helicase activity	1.01E-02
89	GO:0102483: scopolin beta-glucosidase activity	1.02E-02
90	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.18E-02
91	GO:0015144: carbohydrate transmembrane transporter activity	1.24E-02
92	GO:0004713: protein tyrosine kinase activity	1.27E-02
93	GO:0004722: protein serine/threonine phosphatase activity	1.36E-02
94	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.39E-02
95	GO:0005351: sugar:proton symporter activity	1.44E-02
96	GO:0044212: transcription regulatory region DNA binding	1.50E-02
97	GO:0015198: oligopeptide transporter activity	1.55E-02
98	GO:0008422: beta-glucosidase activity	1.57E-02
99	GO:0005315: inorganic phosphate transmembrane transporter activity	1.70E-02
100	GO:0005262: calcium channel activity	1.70E-02
101	GO:0009055: electron carrier activity	1.80E-02
102	GO:0008061: chitin binding	2.01E-02
103	GO:0035091: phosphatidylinositol binding	2.01E-02
104	GO:0051119: sugar transmembrane transporter activity	2.01E-02
105	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.17E-02
106	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.17E-02
107	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.17E-02
108	GO:0051087: chaperone binding	2.50E-02
109	GO:0004707: MAP kinase activity	2.68E-02
110	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.68E-02
111	GO:0031625: ubiquitin protein ligase binding	2.78E-02
112	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.85E-02
113	GO:0022891: substrate-specific transmembrane transporter activity	3.04E-02
114	GO:0005102: receptor binding	3.41E-02
115	GO:0005509: calcium ion binding	3.55E-02
116	GO:0051082: unfolded protein binding	3.57E-02
117	GO:0005355: glucose transmembrane transporter activity	4.01E-02
118	GO:0050662: coenzyme binding	4.01E-02
119	GO:0010181: FMN binding	4.01E-02
120	GO:0004518: nuclease activity	4.63E-02
121	GO:0051015: actin filament binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	2.39E-10
2	GO:0005768: endosome	1.24E-04
3	GO:0016021: integral component of membrane	1.30E-04
4	GO:0016442: RISC complex	4.32E-04
5	GO:0005911: cell-cell junction	4.32E-04
6	GO:0010494: cytoplasmic stress granule	7.56E-04
7	GO:0000145: exocyst	8.38E-04
8	GO:0010008: endosome membrane	1.14E-03
9	GO:0000159: protein phosphatase type 2A complex	1.19E-03
10	GO:0070062: extracellular exosome	2.19E-03
11	GO:0005802: trans-Golgi network	3.17E-03
12	GO:0016363: nuclear matrix	5.64E-03
13	GO:0030173: integral component of Golgi membrane	5.64E-03
14	GO:0016604: nuclear body	1.14E-02
15	GO:0015030: Cajal body	1.14E-02
16	GO:0005829: cytosol	1.21E-02
17	GO:0090404: pollen tube tip	1.41E-02
18	GO:0048471: perinuclear region of cytoplasm	1.41E-02
19	GO:0009506: plasmodesma	1.48E-02
20	GO:0031902: late endosome membrane	1.71E-02
21	GO:0090406: pollen tube	1.86E-02
22	GO:0005794: Golgi apparatus	2.07E-02
23	GO:0043234: protein complex	2.17E-02
24	GO:0005635: nuclear envelope	2.69E-02
25	GO:0030136: clathrin-coated vesicle	3.41E-02
26	GO:0005783: endoplasmic reticulum	3.68E-02
27	GO:0005770: late endosome	3.81E-02
28	GO:0005743: mitochondrial inner membrane	4.96E-02