co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010111: glyoxysome organization	0.00E+00
2	GO:0015833: peptide transport	0.00E+00
3	GO:0030149: sphingolipid catabolic process	0.00E+00
4	GO:0009398: FMN biosynthetic process	0.00E+00
5	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
6	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
7	GO:0035725: sodium ion transmembrane transport	0.00E+00
8	GO:0033542: fatty acid beta-oxidation, unsaturated, even number	0.00E+00
9	GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase	0.00E+00
10	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
11	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
12	GO:0006593: ornithine catabolic process	0.00E+00
13	GO:0030163: protein catabolic process	9.08E-07
14	GO:0098719: sodium ion import across plasma membrane	1.16E-05
15	GO:0071805: potassium ion transmembrane transport	4.71E-05
16	GO:0006511: ubiquitin-dependent protein catabolic process	5.34E-05
17	GO:0019628: urate catabolic process	8.61E-05
18	GO:0061014: positive regulation of mRNA catabolic process	8.61E-05
19	GO:0010265: SCF complex assembly	8.61E-05
20	GO:0019544: arginine catabolic process to glutamate	8.61E-05
21	GO:0006144: purine nucleobase metabolic process	8.61E-05
22	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	8.61E-05
23	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	8.61E-05
24	GO:0051453: regulation of intracellular pH	8.63E-05
25	GO:0006807: nitrogen compound metabolic process	1.63E-04
26	GO:0006212: uracil catabolic process	2.04E-04
27	GO:0051788: response to misfolded protein	2.04E-04
28	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	2.04E-04
29	GO:0019483: beta-alanine biosynthetic process	2.04E-04
30	GO:0019752: carboxylic acid metabolic process	2.04E-04
31	GO:0042939: tripeptide transport	2.04E-04
32	GO:1990069: stomatal opening	2.04E-04
33	GO:0080148: negative regulation of response to water deprivation	2.04E-04
34	GO:0019395: fatty acid oxidation	2.04E-04
35	GO:0015992: proton transport	3.20E-04
36	GO:0051646: mitochondrion localization	3.42E-04
37	GO:0043617: cellular response to sucrose starvation	3.42E-04
38	GO:0010351: lithium ion transport	3.42E-04
39	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	3.42E-04
40	GO:0015991: ATP hydrolysis coupled proton transport	4.86E-04
41	GO:0009647: skotomorphogenesis	4.92E-04
42	GO:0010587: miRNA catabolic process	4.92E-04
43	GO:0001676: long-chain fatty acid metabolic process	4.92E-04
44	GO:0046836: glycolipid transport	4.92E-04
45	GO:0051259: protein oligomerization	4.92E-04
46	GO:0006814: sodium ion transport	5.62E-04
47	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	6.55E-04
48	GO:0042938: dipeptide transport	6.55E-04
49	GO:0009414: response to water deprivation	7.18E-04
50	GO:0010286: heat acclimation	8.18E-04
51	GO:0006564: L-serine biosynthetic process	8.29E-04
52	GO:1902183: regulation of shoot apical meristem development	8.29E-04
53	GO:0009816: defense response to bacterium, incompatible interaction	9.62E-04
54	GO:0043248: proteasome assembly	1.01E-03
55	GO:0042176: regulation of protein catabolic process	1.01E-03
56	GO:0048831: regulation of shoot system development	1.01E-03
57	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.01E-03
58	GO:0006561: proline biosynthetic process	1.01E-03
59	GO:0048528: post-embryonic root development	1.41E-03
60	GO:0000338: protein deneddylation	1.41E-03
61	GO:0070370: cellular heat acclimation	1.41E-03
62	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.41E-03
63	GO:0010044: response to aluminum ion	1.41E-03
64	GO:0009610: response to symbiotic fungus	1.41E-03
65	GO:0006402: mRNA catabolic process	1.63E-03
66	GO:0009850: auxin metabolic process	1.63E-03
67	GO:0009690: cytokinin metabolic process	1.63E-03
68	GO:0031540: regulation of anthocyanin biosynthetic process	1.63E-03
69	GO:0040029: regulation of gene expression, epigenetic	1.63E-03
70	GO:0055075: potassium ion homeostasis	1.63E-03
71	GO:0009231: riboflavin biosynthetic process	1.63E-03
72	GO:0006631: fatty acid metabolic process	1.75E-03
73	GO:0015996: chlorophyll catabolic process	1.86E-03
74	GO:0043562: cellular response to nitrogen levels	1.86E-03
75	GO:0080144: amino acid homeostasis	2.10E-03
76	GO:0034765: regulation of ion transmembrane transport	2.10E-03
77	GO:0090333: regulation of stomatal closure	2.10E-03
78	GO:0006754: ATP biosynthetic process	2.10E-03
79	GO:0009060: aerobic respiration	2.10E-03
80	GO:0015780: nucleotide-sugar transport	2.10E-03
81	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.35E-03
82	GO:0055062: phosphate ion homeostasis	2.61E-03
83	GO:0010192: mucilage biosynthetic process	2.61E-03
84	GO:0051603: proteolysis involved in cellular protein catabolic process	2.62E-03
85	GO:0016485: protein processing	2.87E-03
86	GO:0009626: plant-type hypersensitive response	3.18E-03
87	GO:0007031: peroxisome organization	4.03E-03
88	GO:0006338: chromatin remodeling	4.65E-03
89	GO:0009695: jasmonic acid biosynthetic process	4.98E-03
90	GO:0031408: oxylipin biosynthetic process	5.32E-03
91	GO:0003333: amino acid transmembrane transport	5.32E-03
92	GO:0030433: ubiquitin-dependent ERAD pathway	5.66E-03
93	GO:0001944: vasculature development	6.01E-03
94	GO:0009651: response to salt stress	6.19E-03
95	GO:0010584: pollen exine formation	6.36E-03
96	GO:0006817: phosphate ion transport	6.36E-03
97	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.73E-03
98	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.91E-03
99	GO:0042391: regulation of membrane potential	7.10E-03
100	GO:0010051: xylem and phloem pattern formation	7.10E-03
101	GO:0010118: stomatal movement	7.10E-03
102	GO:0010154: fruit development	7.48E-03
103	GO:0006520: cellular amino acid metabolic process	7.48E-03
104	GO:0010197: polar nucleus fusion	7.48E-03
105	GO:0009646: response to absence of light	7.87E-03
106	GO:0006623: protein targeting to vacuole	8.26E-03
107	GO:0010183: pollen tube guidance	8.26E-03
108	GO:0048825: cotyledon development	8.26E-03
109	GO:0055085: transmembrane transport	8.42E-03
110	GO:0010193: response to ozone	8.66E-03
111	GO:0006635: fatty acid beta-oxidation	8.66E-03
112	GO:0009630: gravitropism	9.07E-03
113	GO:1901657: glycosyl compound metabolic process	9.48E-03
114	GO:0006914: autophagy	9.91E-03
115	GO:0048366: leaf development	1.13E-02
116	GO:0008219: cell death	1.35E-02
117	GO:0010311: lateral root formation	1.40E-02
118	GO:0010119: regulation of stomatal movement	1.50E-02
119	GO:0045087: innate immune response	1.60E-02
120	GO:0051707: response to other organism	1.92E-02
121	GO:0009640: photomorphogenesis	1.92E-02
122	GO:0009744: response to sucrose	1.92E-02
123	GO:0008643: carbohydrate transport	2.02E-02
124	GO:0015031: protein transport	2.06E-02
125	GO:0009636: response to toxic substance	2.08E-02
126	GO:0006855: drug transmembrane transport	2.14E-02
127	GO:0042538: hyperosmotic salinity response	2.25E-02
128	GO:0055114: oxidation-reduction process	2.25E-02
129	GO:0006812: cation transport	2.25E-02
130	GO:0009846: pollen germination	2.25E-02
131	GO:0009809: lignin biosynthetic process	2.37E-02
132	GO:0009585: red, far-red light phototransduction	2.37E-02
133	GO:0006813: potassium ion transport	2.37E-02
134	GO:0009736: cytokinin-activated signaling pathway	2.37E-02
135	GO:0009908: flower development	2.82E-02
136	GO:0016569: covalent chromatin modification	2.92E-02
137	GO:0009738: abscisic acid-activated signaling pathway	3.02E-02
138	GO:0009624: response to nematode	3.04E-02
139	GO:0018105: peptidyl-serine phosphorylation	3.11E-02
140	GO:0051726: regulation of cell cycle	3.17E-02
141	GO:0009611: response to wounding	3.19E-02
142	GO:0007275: multicellular organism development	3.55E-02
143	GO:0009058: biosynthetic process	3.71E-02
144	GO:0009737: response to abscisic acid	3.92E-02
145	GO:0010150: leaf senescence	4.49E-02
146	GO:0010228: vegetative to reproductive phase transition of meristem	4.64E-02
147	GO:0009739: response to gibberellin	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
2	GO:0003837: beta-ureidopropionase activity	0.00E+00
3	GO:0015197: peptide transporter activity	0.00E+00
4	GO:0015334: high-affinity oligopeptide transporter activity	0.00E+00
5	GO:0004846: urate oxidase activity	0.00E+00
6	GO:0032441: pheophorbide a oxygenase activity	0.00E+00
7	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
8	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
9	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
10	GO:0008531: riboflavin kinase activity	0.00E+00
11	GO:0000824: inositol tetrakisphosphate 3-kinase activity	8.61E-05
12	GO:0070401: NADP+ binding	8.61E-05
13	GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity	8.61E-05
14	GO:0030544: Hsp70 protein binding	8.61E-05
15	GO:0047326: inositol tetrakisphosphate 5-kinase activity	8.61E-05
16	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	8.61E-05
17	GO:0019786: Atg8-specific protease activity	8.61E-05
18	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	8.61E-05
19	GO:0016229: steroid dehydrogenase activity	8.61E-05
20	GO:0015386: potassium:proton antiporter activity	1.22E-04
21	GO:0003919: FMN adenylyltransferase activity	2.04E-04
22	GO:0019779: Atg8 activating enzyme activity	2.04E-04
23	GO:0003988: acetyl-CoA C-acyltransferase activity	2.04E-04
24	GO:0047517: 1,4-beta-D-xylan synthase activity	2.04E-04
25	GO:0004534: 5'-3' exoribonuclease activity	2.04E-04
26	GO:0042937: tripeptide transporter activity	2.04E-04
27	GO:0008517: folic acid transporter activity	2.04E-04
28	GO:0004617: phosphoglycerate dehydrogenase activity	2.04E-04
29	GO:0008233: peptidase activity	2.62E-04
30	GO:0004298: threonine-type endopeptidase activity	3.20E-04
31	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.42E-04
32	GO:0004557: alpha-galactosidase activity	3.42E-04
33	GO:0052692: raffinose alpha-galactosidase activity	3.42E-04
34	GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity	3.42E-04
35	GO:0017089: glycolipid transporter activity	4.92E-04
36	GO:0030170: pyridoxal phosphate binding	6.25E-04
37	GO:0015369: calcium:proton antiporter activity	6.55E-04
38	GO:0019776: Atg8 ligase activity	6.55E-04
39	GO:0015368: calcium:cation antiporter activity	6.55E-04
40	GO:0008409: 5'-3' exonuclease activity	6.55E-04
41	GO:0042936: dipeptide transporter activity	6.55E-04
42	GO:0051861: glycolipid binding	6.55E-04
43	GO:0015385: sodium:proton antiporter activity	7.28E-04
44	GO:0031593: polyubiquitin binding	1.01E-03
45	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.01E-03
46	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.01E-03
47	GO:0036402: proteasome-activating ATPase activity	1.01E-03
48	GO:0015081: sodium ion transmembrane transporter activity	1.01E-03
49	GO:0102391: decanoate--CoA ligase activity	1.20E-03
50	GO:0005242: inward rectifier potassium channel activity	1.20E-03
51	GO:0016831: carboxy-lyase activity	1.41E-03
52	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.41E-03
53	GO:0004467: long-chain fatty acid-CoA ligase activity	1.41E-03
54	GO:0004033: aldo-keto reductase (NADP) activity	1.63E-03
55	GO:0052747: sinapyl alcohol dehydrogenase activity	1.63E-03
56	GO:0015491: cation:cation antiporter activity	1.63E-03
57	GO:0015078: hydrogen ion transmembrane transporter activity	1.86E-03
58	GO:0000989: transcription factor activity, transcription factor binding	2.10E-03
59	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	2.10E-03
60	GO:0030234: enzyme regulator activity	2.61E-03
61	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.87E-03
62	GO:0008559: xenobiotic-transporting ATPase activity	2.87E-03
63	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.15E-03
64	GO:0015114: phosphate ion transmembrane transporter activity	3.43E-03
65	GO:0017025: TBP-class protein binding	4.03E-03
66	GO:0043130: ubiquitin binding	4.65E-03
67	GO:0003714: transcription corepressor activity	4.65E-03
68	GO:0051536: iron-sulfur cluster binding	4.65E-03
69	GO:0008270: zinc ion binding	5.80E-03
70	GO:0000166: nucleotide binding	6.22E-03
71	GO:0005515: protein binding	6.49E-03
72	GO:0030551: cyclic nucleotide binding	7.10E-03
73	GO:0004402: histone acetyltransferase activity	7.10E-03
74	GO:0001085: RNA polymerase II transcription factor binding	7.48E-03
75	GO:0042802: identical protein binding	7.85E-03
76	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.85E-03
77	GO:0004197: cysteine-type endopeptidase activity	9.07E-03
78	GO:0000287: magnesium ion binding	9.38E-03
79	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.48E-03
80	GO:0016597: amino acid binding	1.08E-02
81	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.21E-02
82	GO:0102483: scopolin beta-glucosidase activity	1.26E-02
83	GO:0004683: calmodulin-dependent protein kinase activity	1.26E-02
84	GO:0004222: metalloendopeptidase activity	1.45E-02
85	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.50E-02
86	GO:0003993: acid phosphatase activity	1.65E-02
87	GO:0008422: beta-glucosidase activity	1.70E-02
88	GO:0051537: 2 iron, 2 sulfur cluster binding	2.02E-02
89	GO:0016491: oxidoreductase activity	2.16E-02
90	GO:0051287: NAD binding	2.19E-02
91	GO:0015171: amino acid transmembrane transporter activity	2.55E-02
92	GO:0008234: cysteine-type peptidase activity	2.55E-02
93	GO:0016887: ATPase activity	2.73E-02
94	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.92E-02
95	GO:0005351: sugar:proton symporter activity	4.42E-02
96	GO:0005516: calmodulin binding	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	1.15E-08
2	GO:0000325: plant-type vacuole	8.41E-08
3	GO:0005773: vacuole	2.11E-06
4	GO:0005774: vacuolar membrane	2.49E-06
5	GO:0005777: peroxisome	3.00E-06
6	GO:0009514: glyoxysome	5.72E-05
7	GO:0010494: cytoplasmic stress granule	7.10E-05
8	GO:0005759: mitochondrial matrix	7.36E-05
9	GO:0008540: proteasome regulatory particle, base subcomplex	8.63E-05
10	GO:0009705: plant-type vacuole membrane	8.77E-05
11	GO:0008541: proteasome regulatory particle, lid subcomplex	1.22E-04
12	GO:0005829: cytosol	2.87E-04
13	GO:0005839: proteasome core complex	3.20E-04
14	GO:0046861: glyoxysomal membrane	3.42E-04
15	GO:0005838: proteasome regulatory particle	3.42E-04
16	GO:0005775: vacuolar lumen	4.92E-04
17	GO:0005844: polysome	6.55E-04
18	GO:0033179: proton-transporting V-type ATPase, V0 domain	6.55E-04
19	GO:0005776: autophagosome	6.55E-04
20	GO:0000932: P-body	9.13E-04
21	GO:0031597: cytosolic proteasome complex	1.20E-03
22	GO:0031595: nuclear proteasome complex	1.41E-03
23	GO:0000421: autophagosome membrane	1.63E-03
24	GO:0019773: proteasome core complex, alpha-subunit complex	1.86E-03
25	GO:0008180: COP9 signalosome	2.10E-03
26	GO:0005794: Golgi apparatus	2.41E-03
27	GO:0017119: Golgi transport complex	2.61E-03
28	GO:0005750: mitochondrial respiratory chain complex III	3.73E-03
29	GO:0005764: lysosome	3.73E-03
30	GO:0005758: mitochondrial intermembrane space	4.65E-03
31	GO:0005741: mitochondrial outer membrane	5.32E-03
32	GO:0031410: cytoplasmic vesicle	5.66E-03
33	GO:0009506: plasmodesma	9.12E-03
34	GO:0032580: Golgi cisterna membrane	9.91E-03
35	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.05E-02
36	GO:0005886: plasma membrane	1.06E-02
37	GO:0005667: transcription factor complex	1.21E-02
38	GO:0005768: endosome	1.33E-02
39	GO:0090406: pollen tube	1.92E-02
40	GO:0000139: Golgi membrane	2.23E-02
41	GO:0005887: integral component of plasma membrane	2.39E-02
42	GO:0010008: endosome membrane	2.73E-02
43	GO:0022626: cytosolic ribosome	2.99E-02
44	GO:0009706: chloroplast inner membrane	3.04E-02
45	GO:0005615: extracellular space	4.86E-02
46	GO:0005802: trans-Golgi network	4.97E-02