co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0009304: tRNA transcription	0.00E+00
3	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
4	GO:0009903: chloroplast avoidance movement	3.24E-05
5	GO:1902265: abscisic acid homeostasis	1.00E-04
6	GO:0042371: vitamin K biosynthetic process	1.00E-04
7	GO:0071454: cellular response to anoxia	1.00E-04
8	GO:0009098: leucine biosynthetic process	1.09E-04
9	GO:0009767: photosynthetic electron transport chain	2.03E-04
10	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.36E-04
11	GO:2000030: regulation of response to red or far red light	2.36E-04
12	GO:0006898: receptor-mediated endocytosis	2.36E-04
13	GO:0007154: cell communication	2.36E-04
14	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.36E-04
15	GO:0080153: negative regulation of reductive pentose-phosphate cycle	2.36E-04
16	GO:0031022: nuclear migration along microfilament	3.92E-04
17	GO:0044375: regulation of peroxisome size	3.92E-04
18	GO:0090307: mitotic spindle assembly	5.64E-04
19	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	5.64E-04
20	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	5.64E-04
21	GO:0010371: regulation of gibberellin biosynthetic process	5.64E-04
22	GO:0010197: polar nucleus fusion	6.40E-04
23	GO:0031122: cytoplasmic microtubule organization	7.50E-04
24	GO:0071483: cellular response to blue light	7.50E-04
25	GO:0009902: chloroplast relocation	7.50E-04
26	GO:0009616: virus induced gene silencing	9.47E-04
27	GO:0009904: chloroplast accumulation movement	9.47E-04
28	GO:0035194: posttranscriptional gene silencing by RNA	1.16E-03
29	GO:0000741: karyogamy	1.16E-03
30	GO:0015995: chlorophyll biosynthetic process	1.30E-03
31	GO:0010019: chloroplast-nucleus signaling pathway	1.38E-03
32	GO:1900056: negative regulation of leaf senescence	1.62E-03
33	GO:0016559: peroxisome fission	1.87E-03
34	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.87E-03
35	GO:0009932: cell tip growth	2.14E-03
36	GO:0022900: electron transport chain	2.14E-03
37	GO:0009744: response to sucrose	2.32E-03
38	GO:0009821: alkaloid biosynthetic process	2.41E-03
39	GO:0046916: cellular transition metal ion homeostasis	2.41E-03
40	GO:0044550: secondary metabolite biosynthetic process	2.66E-03
41	GO:0009638: phototropism	2.70E-03
42	GO:0010380: regulation of chlorophyll biosynthetic process	2.70E-03
43	GO:0008356: asymmetric cell division	2.70E-03
44	GO:0051555: flavonol biosynthetic process	3.00E-03
45	GO:0009641: shade avoidance	3.00E-03
46	GO:0009585: red, far-red light phototransduction	3.11E-03
47	GO:0008285: negative regulation of cell proliferation	3.31E-03
48	GO:0043085: positive regulation of catalytic activity	3.31E-03
49	GO:0030048: actin filament-based movement	3.95E-03
50	GO:0009725: response to hormone	3.95E-03
51	GO:0034605: cellular response to heat	4.30E-03
52	GO:0019253: reductive pentose-phosphate cycle	4.30E-03
53	GO:0007015: actin filament organization	4.30E-03
54	GO:0010223: secondary shoot formation	4.30E-03
55	GO:0007031: peroxisome organization	4.64E-03
56	GO:0042343: indole glucosinolate metabolic process	4.64E-03
57	GO:0006071: glycerol metabolic process	5.00E-03
58	GO:0010073: meristem maintenance	5.75E-03
59	GO:0098542: defense response to other organism	6.14E-03
60	GO:0080092: regulation of pollen tube growth	6.54E-03
61	GO:0055114: oxidation-reduction process	6.75E-03
62	GO:0010227: floral organ abscission	6.94E-03
63	GO:0070417: cellular response to cold	7.78E-03
64	GO:0006606: protein import into nucleus	8.21E-03
65	GO:0006810: transport	8.46E-03
66	GO:0019761: glucosinolate biosynthetic process	1.05E-02
67	GO:0019760: glucosinolate metabolic process	1.15E-02
68	GO:0071805: potassium ion transmembrane transport	1.20E-02
69	GO:0016126: sterol biosynthetic process	1.30E-02
70	GO:0010029: regulation of seed germination	1.35E-02
71	GO:0006811: ion transport	1.68E-02
72	GO:0009407: toxin catabolic process	1.68E-02
73	GO:0009910: negative regulation of flower development	1.74E-02
74	GO:0009637: response to blue light	1.86E-02
75	GO:0030001: metal ion transport	2.03E-02
76	GO:0009640: photomorphogenesis	2.22E-02
77	GO:0009636: response to toxic substance	2.41E-02
78	GO:0006813: potassium ion transport	2.75E-02
79	GO:0051603: proteolysis involved in cellular protein catabolic process	2.81E-02
80	GO:0009742: brassinosteroid mediated signaling pathway	3.68E-02
81	GO:0009416: response to light stimulus	3.84E-02
82	GO:0009058: biosynthetic process	4.30E-02
83	GO:0045893: positive regulation of transcription, DNA-templated	4.40E-02

Rank	GO Term	Adjusted P value
1	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0003862: 3-isopropylmalate dehydrogenase activity	5.31E-07
4	GO:0019899: enzyme binding	4.38E-05
5	GO:0046906: tetrapyrrole binding	1.00E-04
6	GO:0004328: formamidase activity	1.00E-04
7	GO:0008430: selenium binding	3.92E-04
8	GO:0004180: carboxypeptidase activity	3.92E-04
9	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.92E-04
10	GO:0004848: ureidoglycolate hydrolase activity	3.92E-04
11	GO:0000254: C-4 methylsterol oxidase activity	5.64E-04
12	GO:0016851: magnesium chelatase activity	5.64E-04
13	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	5.64E-04
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	7.50E-04
15	GO:0043015: gamma-tubulin binding	7.50E-04
16	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	7.50E-04
17	GO:0048038: quinone binding	7.83E-04
18	GO:0051011: microtubule minus-end binding	9.47E-04
19	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	9.47E-04
20	GO:0005506: iron ion binding	1.05E-03
21	GO:0000293: ferric-chelate reductase activity	1.16E-03
22	GO:0015631: tubulin binding	1.38E-03
23	GO:0003724: RNA helicase activity	2.14E-03
24	GO:0046914: transition metal ion binding	2.14E-03
25	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.41E-03
26	GO:0051537: 2 iron, 2 sulfur cluster binding	2.51E-03
27	GO:0016844: strictosidine synthase activity	2.70E-03
28	GO:0051287: NAD binding	2.80E-03
29	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.31E-03
30	GO:0001054: RNA polymerase I activity	3.31E-03
31	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.32E-03
32	GO:0001056: RNA polymerase III activity	3.63E-03
33	GO:0031072: heat shock protein binding	3.95E-03
34	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.30E-03
35	GO:0008146: sulfotransferase activity	4.64E-03
36	GO:0015079: potassium ion transmembrane transporter activity	5.75E-03
37	GO:0008194: UDP-glycosyltransferase activity	8.52E-03
38	GO:0008080: N-acetyltransferase activity	8.65E-03
39	GO:0004872: receptor activity	9.56E-03
40	GO:0004518: nuclease activity	1.05E-02
41	GO:0000287: magnesium ion binding	1.16E-02
42	GO:0008483: transaminase activity	1.20E-02
43	GO:0016788: hydrolase activity, acting on ester bonds	1.20E-02
44	GO:0005200: structural constituent of cytoskeleton	1.20E-02
45	GO:0019825: oxygen binding	1.27E-02
46	GO:0030247: polysaccharide binding	1.46E-02
47	GO:0008236: serine-type peptidase activity	1.51E-02
48	GO:0004364: glutathione transferase activity	2.16E-02
49	GO:0004185: serine-type carboxypeptidase activity	2.22E-02
50	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.75E-02
51	GO:0016491: oxidoreductase activity	2.80E-02
52	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.17E-02
53	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.31E-02
54	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.31E-02
55	GO:0022857: transmembrane transporter activity	3.38E-02
56	GO:0020037: heme binding	3.51E-02
57	GO:0051082: unfolded protein binding	3.53E-02
58	GO:0016746: transferase activity, transferring acyl groups	3.61E-02
59	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.22E-02
60	GO:0008565: protein transporter activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.22E-08
2	GO:0009535: chloroplast thylakoid membrane	8.36E-06
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	8.98E-05
4	GO:0008274: gamma-tubulin ring complex	2.36E-04
5	GO:0000923: equatorial microtubule organizing center	5.64E-04
6	GO:0031982: vesicle	1.87E-03
7	GO:0005779: integral component of peroxisomal membrane	2.14E-03
8	GO:0005736: DNA-directed RNA polymerase I complex	2.41E-03
9	GO:0000922: spindle pole	2.41E-03
10	GO:0005666: DNA-directed RNA polymerase III complex	2.70E-03
11	GO:0016324: apical plasma membrane	3.00E-03
12	GO:0043234: protein complex	5.00E-03
13	GO:0042651: thylakoid membrane	5.75E-03
14	GO:0005773: vacuole	6.43E-03
15	GO:0009534: chloroplast thylakoid	1.03E-02
16	GO:0005778: peroxisomal membrane	1.20E-02
17	GO:0031969: chloroplast membrane	1.47E-02
18	GO:0031966: mitochondrial membrane	2.61E-02
19	GO:0009706: chloroplast inner membrane	3.53E-02
20	GO:0010287: plastoglobule	3.99E-02
21	GO:0009543: chloroplast thylakoid lumen	4.14E-02
22	GO:0005623: cell	4.22E-02
23	GO:0005777: peroxisome	4.40E-02
24	GO:0009579: thylakoid	4.58E-02