co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0015717: triose phosphate transport	0.00E+00
3	GO:0071474: cellular hyperosmotic response	0.00E+00
4	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
5	GO:0002184: cytoplasmic translational termination	0.00E+00
6	GO:0030155: regulation of cell adhesion	0.00E+00
7	GO:0000025: maltose catabolic process	0.00E+00
8	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
9	GO:0090279: regulation of calcium ion import	0.00E+00
10	GO:0007172: signal complex assembly	0.00E+00
11	GO:0015979: photosynthesis	2.95E-07
12	GO:0009773: photosynthetic electron transport in photosystem I	6.69E-07
13	GO:0042549: photosystem II stabilization	1.74E-06
14	GO:0015995: chlorophyll biosynthetic process	4.00E-06
15	GO:0061077: chaperone-mediated protein folding	5.63E-06
16	GO:0032544: plastid translation	1.06E-05
17	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.12E-05
18	GO:0005983: starch catabolic process	4.17E-05
19	GO:0010027: thylakoid membrane organization	5.34E-05
20	GO:0010021: amylopectin biosynthetic process	5.61E-05
21	GO:0065002: intracellular protein transmembrane transport	2.92E-04
22	GO:0080093: regulation of photorespiration	2.92E-04
23	GO:0043007: maintenance of rDNA	2.92E-04
24	GO:0031998: regulation of fatty acid beta-oxidation	2.92E-04
25	GO:0000023: maltose metabolic process	2.92E-04
26	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.92E-04
27	GO:0005980: glycogen catabolic process	2.92E-04
28	GO:0043953: protein transport by the Tat complex	2.92E-04
29	GO:0006782: protoporphyrinogen IX biosynthetic process	5.95E-04
30	GO:0018026: peptidyl-lysine monomethylation	6.40E-04
31	GO:0031648: protein destabilization	6.40E-04
32	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.40E-04
33	GO:0080181: lateral root branching	6.40E-04
34	GO:0051262: protein tetramerization	6.40E-04
35	GO:0035304: regulation of protein dephosphorylation	6.40E-04
36	GO:0005976: polysaccharide metabolic process	6.40E-04
37	GO:0019684: photosynthesis, light reaction	6.86E-04
38	GO:0009266: response to temperature stimulus	9.97E-04
39	GO:0010207: photosystem II assembly	9.97E-04
40	GO:0035436: triose phosphate transmembrane transport	1.04E-03
41	GO:0016050: vesicle organization	1.04E-03
42	GO:0005977: glycogen metabolic process	1.04E-03
43	GO:0048281: inflorescence morphogenesis	1.04E-03
44	GO:0006000: fructose metabolic process	1.04E-03
45	GO:0009405: pathogenesis	1.04E-03
46	GO:0010148: transpiration	1.48E-03
47	GO:0010306: rhamnogalacturonan II biosynthetic process	1.48E-03
48	GO:1901332: negative regulation of lateral root development	1.48E-03
49	GO:0010017: red or far-red light signaling pathway	1.81E-03
50	GO:0006808: regulation of nitrogen utilization	1.99E-03
51	GO:0015976: carbon utilization	1.99E-03
52	GO:0015994: chlorophyll metabolic process	1.99E-03
53	GO:0010600: regulation of auxin biosynthetic process	1.99E-03
54	GO:0006552: leucine catabolic process	1.99E-03
55	GO:0015846: polyamine transport	1.99E-03
56	GO:0015713: phosphoglycerate transport	1.99E-03
57	GO:0006097: glyoxylate cycle	2.54E-03
58	GO:0000304: response to singlet oxygen	2.54E-03
59	GO:0016120: carotene biosynthetic process	2.54E-03
60	GO:0019252: starch biosynthetic process	3.12E-03
61	GO:0009643: photosynthetic acclimation	3.14E-03
62	GO:0009635: response to herbicide	3.14E-03
63	GO:0042793: transcription from plastid promoter	3.14E-03
64	GO:0010190: cytochrome b6f complex assembly	3.14E-03
65	GO:0003006: developmental process involved in reproduction	3.14E-03
66	GO:0006810: transport	3.39E-03
67	GO:0030488: tRNA methylation	3.77E-03
68	GO:0009955: adaxial/abaxial pattern specification	3.77E-03
69	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.77E-03
70	GO:0042026: protein refolding	3.77E-03
71	GO:0042372: phylloquinone biosynthetic process	3.77E-03
72	GO:1901259: chloroplast rRNA processing	3.77E-03
73	GO:0006458: 'de novo' protein folding	3.77E-03
74	GO:0022904: respiratory electron transport chain	4.45E-03
75	GO:0010103: stomatal complex morphogenesis	4.45E-03
76	GO:0010161: red light signaling pathway	4.45E-03
77	GO:0009769: photosynthesis, light harvesting in photosystem II	4.45E-03
78	GO:0070370: cellular heat acclimation	4.45E-03
79	GO:0009704: de-etiolation	5.17E-03
80	GO:0010928: regulation of auxin mediated signaling pathway	5.17E-03
81	GO:0005978: glycogen biosynthetic process	5.17E-03
82	GO:0006353: DNA-templated transcription, termination	5.17E-03
83	GO:0006002: fructose 6-phosphate metabolic process	5.92E-03
84	GO:0001558: regulation of cell growth	5.92E-03
85	GO:0016311: dephosphorylation	5.98E-03
86	GO:0006783: heme biosynthetic process	6.71E-03
87	GO:0051865: protein autoubiquitination	6.71E-03
88	GO:0048507: meristem development	6.71E-03
89	GO:0009631: cold acclimation	7.28E-03
90	GO:0005982: starch metabolic process	7.54E-03
91	GO:0010205: photoinhibition	7.54E-03
92	GO:0006779: porphyrin-containing compound biosynthetic process	7.54E-03
93	GO:0048829: root cap development	8.40E-03
94	GO:0031627: telomeric loop formation	8.40E-03
95	GO:0009409: response to cold	8.66E-03
96	GO:0009750: response to fructose	9.30E-03
97	GO:0010015: root morphogenesis	9.30E-03
98	GO:0009698: phenylpropanoid metabolic process	9.30E-03
99	GO:0009089: lysine biosynthetic process via diaminopimelate	9.30E-03
100	GO:0006415: translational termination	9.30E-03
101	GO:0009073: aromatic amino acid family biosynthetic process	9.30E-03
102	GO:0071365: cellular response to auxin stimulus	1.02E-02
103	GO:0010582: floral meristem determinacy	1.02E-02
104	GO:0005975: carbohydrate metabolic process	1.08E-02
105	GO:0006108: malate metabolic process	1.12E-02
106	GO:0006006: glucose metabolic process	1.12E-02
107	GO:0018107: peptidyl-threonine phosphorylation	1.12E-02
108	GO:0006094: gluconeogenesis	1.12E-02
109	GO:0005986: sucrose biosynthetic process	1.12E-02
110	GO:0010628: positive regulation of gene expression	1.12E-02
111	GO:0009934: regulation of meristem structural organization	1.22E-02
112	GO:0006302: double-strand break repair	1.22E-02
113	GO:0048467: gynoecium development	1.22E-02
114	GO:0009658: chloroplast organization	1.23E-02
115	GO:0010030: positive regulation of seed germination	1.32E-02
116	GO:0009735: response to cytokinin	1.39E-02
117	GO:0042742: defense response to bacterium	1.51E-02
118	GO:0009944: polarity specification of adaxial/abaxial axis	1.54E-02
119	GO:0009768: photosynthesis, light harvesting in photosystem I	1.65E-02
120	GO:0051302: regulation of cell division	1.65E-02
121	GO:0007017: microtubule-based process	1.65E-02
122	GO:0003333: amino acid transmembrane transport	1.76E-02
123	GO:0019915: lipid storage	1.76E-02
124	GO:0031408: oxylipin biosynthetic process	1.76E-02
125	GO:0051321: meiotic cell cycle	1.76E-02
126	GO:0019748: secondary metabolic process	1.88E-02
127	GO:0030245: cellulose catabolic process	1.88E-02
128	GO:0035428: hexose transmembrane transport	1.88E-02
129	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.88E-02
130	GO:0001944: vasculature development	2.00E-02
131	GO:0009686: gibberellin biosynthetic process	2.00E-02
132	GO:0006284: base-excision repair	2.12E-02
133	GO:0016117: carotenoid biosynthetic process	2.25E-02
134	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.25E-02
135	GO:0006869: lipid transport	2.28E-02
136	GO:0042631: cellular response to water deprivation	2.37E-02
137	GO:0048868: pollen tube development	2.50E-02
138	GO:0046323: glucose import	2.50E-02
139	GO:0009646: response to absence of light	2.64E-02
140	GO:0071554: cell wall organization or biogenesis	2.91E-02
141	GO:0032502: developmental process	3.05E-02
142	GO:0010583: response to cyclopentenone	3.05E-02
143	GO:1901657: glycosyl compound metabolic process	3.19E-02
144	GO:0071281: cellular response to iron ion	3.19E-02
145	GO:0009567: double fertilization forming a zygote and endosperm	3.34E-02
146	GO:0045490: pectin catabolic process	3.43E-02
147	GO:0009607: response to biotic stimulus	3.93E-02
148	GO:0009627: systemic acquired resistance	4.09E-02
149	GO:0009414: response to water deprivation	4.34E-02
150	GO:0018298: protein-chromophore linkage	4.57E-02
151	GO:0009817: defense response to fungus, incompatible interaction	4.57E-02
152	GO:0000160: phosphorelay signal transduction system	4.73E-02
153	GO:0006412: translation	4.79E-02
154	GO:0010218: response to far red light	4.89E-02
155	GO:0009834: plant-type secondary cell wall biogenesis	4.89E-02
156	GO:0006499: N-terminal protein myristoylation	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
6	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0016166: phytoene dehydrogenase activity	0.00E+00
9	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
10	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
11	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
12	GO:0048039: ubiquinone binding	0.00E+00
13	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	3.89E-06
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.61E-05
15	GO:0005528: FK506 binding	1.04E-04
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.73E-04
17	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.92E-04
18	GO:0005227: calcium activated cation channel activity	2.92E-04
19	GO:0008184: glycogen phosphorylase activity	2.92E-04
20	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.92E-04
21	GO:0010242: oxygen evolving activity	2.92E-04
22	GO:0004853: uroporphyrinogen decarboxylase activity	2.92E-04
23	GO:0004645: phosphorylase activity	2.92E-04
24	GO:0047746: chlorophyllase activity	6.40E-04
25	GO:0016868: intramolecular transferase activity, phosphotransferases	6.40E-04
26	GO:0010297: heteropolysaccharide binding	6.40E-04
27	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.40E-04
28	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.40E-04
29	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.40E-04
30	GO:0019156: isoamylase activity	6.40E-04
31	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.40E-04
32	GO:0044183: protein binding involved in protein folding	6.86E-04
33	GO:0019843: rRNA binding	8.44E-04
34	GO:0004565: beta-galactosidase activity	8.88E-04
35	GO:0071917: triose-phosphate transmembrane transporter activity	1.04E-03
36	GO:0043169: cation binding	1.04E-03
37	GO:0017150: tRNA dihydrouridine synthase activity	1.04E-03
38	GO:0090729: toxin activity	1.04E-03
39	GO:0043023: ribosomal large subunit binding	1.48E-03
40	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.48E-03
41	GO:0015203: polyamine transmembrane transporter activity	1.48E-03
42	GO:0016851: magnesium chelatase activity	1.48E-03
43	GO:0016149: translation release factor activity, codon specific	1.48E-03
44	GO:0043621: protein self-association	1.69E-03
45	GO:0030570: pectate lyase activity	1.98E-03
46	GO:0042277: peptide binding	1.99E-03
47	GO:0015120: phosphoglycerate transmembrane transporter activity	1.99E-03
48	GO:0016279: protein-lysine N-methyltransferase activity	1.99E-03
49	GO:0019199: transmembrane receptor protein kinase activity	1.99E-03
50	GO:0008725: DNA-3-methyladenine glycosylase activity	2.54E-03
51	GO:0016615: malate dehydrogenase activity	3.14E-03
52	GO:2001070: starch binding	3.14E-03
53	GO:0004556: alpha-amylase activity	3.14E-03
54	GO:0016208: AMP binding	3.14E-03
55	GO:0048038: quinone binding	3.34E-03
56	GO:0051920: peroxiredoxin activity	3.77E-03
57	GO:0030060: L-malate dehydrogenase activity	3.77E-03
58	GO:0005261: cation channel activity	3.77E-03
59	GO:0005337: nucleoside transmembrane transporter activity	5.17E-03
60	GO:0016209: antioxidant activity	5.17E-03
61	GO:0004033: aldo-keto reductase (NADP) activity	5.17E-03
62	GO:0008173: RNA methyltransferase activity	5.92E-03
63	GO:0003747: translation release factor activity	6.71E-03
64	GO:0015174: basic amino acid transmembrane transporter activity	7.54E-03
65	GO:0003691: double-stranded telomeric DNA binding	9.30E-03
66	GO:0004185: serine-type carboxypeptidase activity	1.03E-02
67	GO:0004089: carbonate dehydratase activity	1.12E-02
68	GO:0051537: 2 iron, 2 sulfur cluster binding	1.12E-02
69	GO:0008266: poly(U) RNA binding	1.22E-02
70	GO:0031409: pigment binding	1.43E-02
71	GO:0008408: 3'-5' exonuclease activity	1.76E-02
72	GO:0033612: receptor serine/threonine kinase binding	1.76E-02
73	GO:0003735: structural constituent of ribosome	1.82E-02
74	GO:0022891: substrate-specific transmembrane transporter activity	2.00E-02
75	GO:0008810: cellulase activity	2.00E-02
76	GO:0005355: glucose transmembrane transporter activity	2.64E-02
77	GO:0016829: lyase activity	2.69E-02
78	GO:0030170: pyridoxal phosphate binding	2.76E-02
79	GO:0009055: electron carrier activity	2.88E-02
80	GO:0000156: phosphorelay response regulator activity	3.19E-02
81	GO:0015297: antiporter activity	3.28E-02
82	GO:0005200: structural constituent of cytoskeleton	3.48E-02
83	GO:0008483: transaminase activity	3.48E-02
84	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.48E-02
85	GO:0016413: O-acetyltransferase activity	3.63E-02
86	GO:0016168: chlorophyll binding	3.93E-02
87	GO:0008289: lipid binding	3.97E-02
88	GO:0005509: calcium ion binding	4.00E-02
89	GO:0102483: scopolin beta-glucosidase activity	4.25E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0010368: chloroplast isoamylase complex	0.00E+00
6	GO:0009507: chloroplast	4.94E-25
7	GO:0009534: chloroplast thylakoid	2.79E-20
8	GO:0009535: chloroplast thylakoid membrane	1.52E-16
9	GO:0009570: chloroplast stroma	1.97E-13
10	GO:0009941: chloroplast envelope	1.90E-10
11	GO:0009579: thylakoid	2.46E-08
12	GO:0009543: chloroplast thylakoid lumen	4.69E-08
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.07E-07
14	GO:0009654: photosystem II oxygen evolving complex	4.55E-06
15	GO:0019898: extrinsic component of membrane	2.23E-05
16	GO:0030095: chloroplast photosystem II	6.23E-05
17	GO:0010287: plastoglobule	1.16E-04
18	GO:0031977: thylakoid lumen	1.84E-04
19	GO:0009501: amyloplast	2.91E-04
20	GO:0009538: photosystem I reaction center	2.91E-04
21	GO:0031361: integral component of thylakoid membrane	2.92E-04
22	GO:0000791: euchromatin	2.92E-04
23	GO:0009295: nucleoid	5.13E-04
24	GO:0030870: Mre11 complex	6.40E-04
25	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.40E-04
26	GO:0009508: plastid chromosome	8.88E-04
27	GO:0010007: magnesium chelatase complex	1.04E-03
28	GO:0009509: chromoplast	1.04E-03
29	GO:0033281: TAT protein transport complex	1.04E-03
30	GO:0042651: thylakoid membrane	1.51E-03
31	GO:0000795: synaptonemal complex	2.54E-03
32	GO:0031969: chloroplast membrane	3.70E-03
33	GO:0031305: integral component of mitochondrial inner membrane	5.17E-03
34	GO:0005840: ribosome	5.25E-03
35	GO:0000783: nuclear telomere cap complex	5.92E-03
36	GO:0005763: mitochondrial small ribosomal subunit	6.71E-03
37	GO:0045298: tubulin complex	6.71E-03
38	GO:0005740: mitochondrial envelope	8.40E-03
39	GO:0048046: apoplast	9.36E-03
40	GO:0030076: light-harvesting complex	1.32E-02
41	GO:0043234: protein complex	1.43E-02
42	GO:0009536: plastid	2.14E-02
43	GO:0009522: photosystem I	2.64E-02
44	GO:0009523: photosystem II	2.77E-02
45	GO:0000785: chromatin	3.05E-02
46	GO:0005778: peroxisomal membrane	3.48E-02
47	GO:0010319: stromule	3.48E-02
48	GO:0005773: vacuole	4.97E-02