GO Enrichment Analysis of Co-expressed Genes with
AT4G38690
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042493: response to drug | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 4 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 5 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 6 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 7 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 8 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 9 | GO:0000256: allantoin catabolic process | 1.59E-06 |
| 10 | GO:0015979: photosynthesis | 3.79E-06 |
| 11 | GO:0005977: glycogen metabolic process | 5.87E-06 |
| 12 | GO:0010136: ureide catabolic process | 5.87E-06 |
| 13 | GO:0006145: purine nucleobase catabolic process | 1.35E-05 |
| 14 | GO:0010021: amylopectin biosynthetic process | 2.51E-05 |
| 15 | GO:0006021: inositol biosynthetic process | 2.51E-05 |
| 16 | GO:0046855: inositol phosphate dephosphorylation | 6.00E-05 |
| 17 | GO:0010189: vitamin E biosynthetic process | 8.36E-05 |
| 18 | GO:0048564: photosystem I assembly | 1.43E-04 |
| 19 | GO:0000481: maturation of 5S rRNA | 1.82E-04 |
| 20 | GO:0010028: xanthophyll cycle | 1.82E-04 |
| 21 | GO:0034337: RNA folding | 1.82E-04 |
| 22 | GO:0006419: alanyl-tRNA aminoacylation | 1.82E-04 |
| 23 | GO:0010362: negative regulation of anion channel activity by blue light | 1.82E-04 |
| 24 | GO:0033388: putrescine biosynthetic process from arginine | 1.82E-04 |
| 25 | GO:0071277: cellular response to calcium ion | 1.82E-04 |
| 26 | GO:0009638: phototropism | 2.59E-04 |
| 27 | GO:0015995: chlorophyll biosynthetic process | 3.07E-04 |
| 28 | GO:0016311: dephosphorylation | 3.29E-04 |
| 29 | GO:0018298: protein-chromophore linkage | 3.52E-04 |
| 30 | GO:0006790: sulfur compound metabolic process | 4.06E-04 |
| 31 | GO:0006432: phenylalanyl-tRNA aminoacylation | 4.10E-04 |
| 32 | GO:0009446: putrescine biosynthetic process | 4.10E-04 |
| 33 | GO:0016122: xanthophyll metabolic process | 4.10E-04 |
| 34 | GO:0010155: regulation of proton transport | 4.10E-04 |
| 35 | GO:0080181: lateral root branching | 4.10E-04 |
| 36 | GO:0009915: phloem sucrose loading | 4.10E-04 |
| 37 | GO:0006435: threonyl-tRNA aminoacylation | 4.10E-04 |
| 38 | GO:0035304: regulation of protein dephosphorylation | 4.10E-04 |
| 39 | GO:0009629: response to gravity | 4.10E-04 |
| 40 | GO:0009637: response to blue light | 4.79E-04 |
| 41 | GO:0046854: phosphatidylinositol phosphorylation | 5.83E-04 |
| 42 | GO:0010114: response to red light | 6.60E-04 |
| 43 | GO:0009644: response to high light intensity | 7.29E-04 |
| 44 | GO:2001141: regulation of RNA biosynthetic process | 9.55E-04 |
| 45 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.55E-04 |
| 46 | GO:0006020: inositol metabolic process | 9.55E-04 |
| 47 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 9.55E-04 |
| 48 | GO:0051016: barbed-end actin filament capping | 9.55E-04 |
| 49 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 9.55E-04 |
| 50 | GO:0009650: UV protection | 9.55E-04 |
| 51 | GO:0009765: photosynthesis, light harvesting | 1.27E-03 |
| 52 | GO:0015994: chlorophyll metabolic process | 1.27E-03 |
| 53 | GO:0055114: oxidation-reduction process | 1.46E-03 |
| 54 | GO:0019252: starch biosynthetic process | 1.60E-03 |
| 55 | GO:0006564: L-serine biosynthetic process | 1.61E-03 |
| 56 | GO:0009904: chloroplast accumulation movement | 1.61E-03 |
| 57 | GO:0016558: protein import into peroxisome matrix | 1.61E-03 |
| 58 | GO:0042549: photosystem II stabilization | 1.98E-03 |
| 59 | GO:0009903: chloroplast avoidance movement | 2.38E-03 |
| 60 | GO:0071470: cellular response to osmotic stress | 2.38E-03 |
| 61 | GO:0006400: tRNA modification | 2.80E-03 |
| 62 | GO:0009769: photosynthesis, light harvesting in photosystem II | 2.80E-03 |
| 63 | GO:0009645: response to low light intensity stimulus | 2.80E-03 |
| 64 | GO:0005975: carbohydrate metabolic process | 2.81E-03 |
| 65 | GO:0007623: circadian rhythm | 2.96E-03 |
| 66 | GO:0009704: de-etiolation | 3.24E-03 |
| 67 | GO:0032508: DNA duplex unwinding | 3.24E-03 |
| 68 | GO:0031540: regulation of anthocyanin biosynthetic process | 3.24E-03 |
| 69 | GO:0016559: peroxisome fission | 3.24E-03 |
| 70 | GO:0009642: response to light intensity | 3.24E-03 |
| 71 | GO:0030091: protein repair | 3.24E-03 |
| 72 | GO:0017004: cytochrome complex assembly | 3.71E-03 |
| 73 | GO:0071482: cellular response to light stimulus | 3.71E-03 |
| 74 | GO:0009657: plastid organization | 3.71E-03 |
| 75 | GO:0006754: ATP biosynthetic process | 4.20E-03 |
| 76 | GO:0000373: Group II intron splicing | 4.20E-03 |
| 77 | GO:0098656: anion transmembrane transport | 4.20E-03 |
| 78 | GO:0009821: alkaloid biosynthetic process | 4.20E-03 |
| 79 | GO:0010206: photosystem II repair | 4.20E-03 |
| 80 | GO:0090333: regulation of stomatal closure | 4.20E-03 |
| 81 | GO:0010205: photoinhibition | 4.71E-03 |
| 82 | GO:0009658: chloroplast organization | 5.15E-03 |
| 83 | GO:0006949: syncytium formation | 5.24E-03 |
| 84 | GO:0006352: DNA-templated transcription, initiation | 5.79E-03 |
| 85 | GO:0009750: response to fructose | 5.79E-03 |
| 86 | GO:0019684: photosynthesis, light reaction | 5.79E-03 |
| 87 | GO:0009793: embryo development ending in seed dormancy | 6.44E-03 |
| 88 | GO:0080167: response to karrikin | 6.77E-03 |
| 89 | GO:0009785: blue light signaling pathway | 6.94E-03 |
| 90 | GO:0006807: nitrogen compound metabolic process | 6.94E-03 |
| 91 | GO:0009585: red, far-red light phototransduction | 7.02E-03 |
| 92 | GO:0010224: response to UV-B | 7.26E-03 |
| 93 | GO:0009266: response to temperature stimulus | 7.55E-03 |
| 94 | GO:0010020: chloroplast fission | 7.55E-03 |
| 95 | GO:0010207: photosystem II assembly | 7.55E-03 |
| 96 | GO:0019853: L-ascorbic acid biosynthetic process | 8.18E-03 |
| 97 | GO:0006863: purine nucleobase transport | 8.82E-03 |
| 98 | GO:0006833: water transport | 8.82E-03 |
| 99 | GO:0080147: root hair cell development | 9.48E-03 |
| 100 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.02E-02 |
| 101 | GO:0007017: microtubule-based process | 1.02E-02 |
| 102 | GO:0048511: rhythmic process | 1.09E-02 |
| 103 | GO:0009269: response to desiccation | 1.09E-02 |
| 104 | GO:0080092: regulation of pollen tube growth | 1.16E-02 |
| 105 | GO:0019748: secondary metabolic process | 1.16E-02 |
| 106 | GO:0009411: response to UV | 1.23E-02 |
| 107 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.23E-02 |
| 108 | GO:0034220: ion transmembrane transport | 1.46E-02 |
| 109 | GO:0048868: pollen tube development | 1.54E-02 |
| 110 | GO:0042752: regulation of circadian rhythm | 1.62E-02 |
| 111 | GO:0006979: response to oxidative stress | 1.66E-02 |
| 112 | GO:0008654: phospholipid biosynthetic process | 1.70E-02 |
| 113 | GO:0009749: response to glucose | 1.70E-02 |
| 114 | GO:0009451: RNA modification | 1.78E-02 |
| 115 | GO:0006635: fatty acid beta-oxidation | 1.79E-02 |
| 116 | GO:0071554: cell wall organization or biogenesis | 1.79E-02 |
| 117 | GO:0010193: response to ozone | 1.79E-02 |
| 118 | GO:0010583: response to cyclopentenone | 1.87E-02 |
| 119 | GO:0009828: plant-type cell wall loosening | 2.05E-02 |
| 120 | GO:0009416: response to light stimulus | 2.30E-02 |
| 121 | GO:0009627: systemic acquired resistance | 2.51E-02 |
| 122 | GO:0010411: xyloglucan metabolic process | 2.61E-02 |
| 123 | GO:0009817: defense response to fungus, incompatible interaction | 2.81E-02 |
| 124 | GO:0000160: phosphorelay signal transduction system | 2.91E-02 |
| 125 | GO:0009813: flavonoid biosynthetic process | 2.91E-02 |
| 126 | GO:0010218: response to far red light | 3.01E-02 |
| 127 | GO:0006811: ion transport | 3.01E-02 |
| 128 | GO:0010119: regulation of stomatal movement | 3.11E-02 |
| 129 | GO:0009853: photorespiration | 3.32E-02 |
| 130 | GO:0034599: cellular response to oxidative stress | 3.43E-02 |
| 131 | GO:0006631: fatty acid metabolic process | 3.76E-02 |
| 132 | GO:0009926: auxin polar transport | 3.98E-02 |
| 133 | GO:0009744: response to sucrose | 3.98E-02 |
| 134 | GO:0042546: cell wall biogenesis | 4.09E-02 |
| 135 | GO:0031347: regulation of defense response | 4.56E-02 |
| 136 | GO:0009664: plant-type cell wall organization | 4.68E-02 |
| 137 | GO:0016042: lipid catabolic process | 4.76E-02 |
| 138 | GO:0007165: signal transduction | 4.81E-02 |
| 139 | GO:0006364: rRNA processing | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 2 | GO:0050126: N-carbamoylputrescine amidase activity | 0.00E+00 |
| 3 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 4 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 5 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 6 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 7 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 8 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 9 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 10 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 11 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 12 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 13 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 14 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.59E-06 |
| 15 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.59E-06 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.59E-06 |
| 17 | GO:0019156: isoamylase activity | 1.59E-06 |
| 18 | GO:0004556: alpha-amylase activity | 6.00E-05 |
| 19 | GO:0004462: lactoylglutathione lyase activity | 6.00E-05 |
| 20 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 8.36E-05 |
| 21 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.82E-04 |
| 22 | GO:0004813: alanine-tRNA ligase activity | 1.82E-04 |
| 23 | GO:0010242: oxygen evolving activity | 1.82E-04 |
| 24 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 3.54E-04 |
| 25 | GO:0000049: tRNA binding | 4.06E-04 |
| 26 | GO:0004617: phosphoglycerate dehydrogenase activity | 4.10E-04 |
| 27 | GO:0004826: phenylalanine-tRNA ligase activity | 4.10E-04 |
| 28 | GO:0004829: threonine-tRNA ligase activity | 4.10E-04 |
| 29 | GO:0019172: glyoxalase III activity | 4.10E-04 |
| 30 | GO:0004751: ribose-5-phosphate isomerase activity | 6.69E-04 |
| 31 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 6.69E-04 |
| 32 | GO:0004848: ureidoglycolate hydrolase activity | 6.69E-04 |
| 33 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.69E-04 |
| 34 | GO:0009882: blue light photoreceptor activity | 9.55E-04 |
| 35 | GO:0001053: plastid sigma factor activity | 1.27E-03 |
| 36 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.27E-03 |
| 37 | GO:0008453: alanine-glyoxylate transaminase activity | 1.27E-03 |
| 38 | GO:0016987: sigma factor activity | 1.27E-03 |
| 39 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.27E-03 |
| 40 | GO:0016853: isomerase activity | 1.49E-03 |
| 41 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 1.61E-03 |
| 42 | GO:0004605: phosphatidate cytidylyltransferase activity | 1.98E-03 |
| 43 | GO:0000293: ferric-chelate reductase activity | 1.98E-03 |
| 44 | GO:0016597: amino acid binding | 2.32E-03 |
| 45 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 2.38E-03 |
| 46 | GO:0016168: chlorophyll binding | 2.60E-03 |
| 47 | GO:0046872: metal ion binding | 2.74E-03 |
| 48 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 4.20E-03 |
| 49 | GO:0003993: acid phosphatase activity | 4.23E-03 |
| 50 | GO:0016844: strictosidine synthase activity | 4.71E-03 |
| 51 | GO:0005315: inorganic phosphate transmembrane transporter activity | 6.94E-03 |
| 52 | GO:0000155: phosphorelay sensor kinase activity | 6.94E-03 |
| 53 | GO:0004565: beta-galactosidase activity | 6.94E-03 |
| 54 | GO:0016491: oxidoreductase activity | 7.42E-03 |
| 55 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 7.55E-03 |
| 56 | GO:0008266: poly(U) RNA binding | 7.55E-03 |
| 57 | GO:0031409: pigment binding | 8.82E-03 |
| 58 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.02E-02 |
| 59 | GO:0022891: substrate-specific transmembrane transporter activity | 1.23E-02 |
| 60 | GO:0003727: single-stranded RNA binding | 1.31E-02 |
| 61 | GO:0008514: organic anion transmembrane transporter activity | 1.31E-02 |
| 62 | GO:0010181: FMN binding | 1.62E-02 |
| 63 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.79E-02 |
| 64 | GO:0048038: quinone binding | 1.79E-02 |
| 65 | GO:0008483: transaminase activity | 2.14E-02 |
| 66 | GO:0008237: metallopeptidase activity | 2.14E-02 |
| 67 | GO:0042802: identical protein binding | 2.21E-02 |
| 68 | GO:0016413: O-acetyltransferase activity | 2.23E-02 |
| 69 | GO:0015250: water channel activity | 2.32E-02 |
| 70 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.61E-02 |
| 71 | GO:0016788: hydrolase activity, acting on ester bonds | 2.74E-02 |
| 72 | GO:0050897: cobalt ion binding | 3.11E-02 |
| 73 | GO:0052689: carboxylic ester hydrolase activity | 3.68E-02 |
| 74 | GO:0004364: glutathione transferase activity | 3.87E-02 |
| 75 | GO:0004185: serine-type carboxypeptidase activity | 3.98E-02 |
| 76 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.21E-02 |
| 77 | GO:0043621: protein self-association | 4.21E-02 |
| 78 | GO:0005198: structural molecule activity | 4.32E-02 |
| 79 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.44E-02 |
| 80 | GO:0051287: NAD binding | 4.56E-02 |
| 81 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.92E-02 |
| 82 | GO:0005509: calcium ion binding | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 6.56E-26 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 1.63E-17 |
| 4 | GO:0009534: chloroplast thylakoid | 5.40E-10 |
| 5 | GO:0009543: chloroplast thylakoid lumen | 8.04E-08 |
| 6 | GO:0009579: thylakoid | 9.92E-08 |
| 7 | GO:0010287: plastoglobule | 1.52E-06 |
| 8 | GO:0009538: photosystem I reaction center | 2.27E-06 |
| 9 | GO:0031977: thylakoid lumen | 2.68E-06 |
| 10 | GO:0030095: chloroplast photosystem II | 2.15E-05 |
| 11 | GO:0009570: chloroplast stroma | 2.66E-05 |
| 12 | GO:0009654: photosystem II oxygen evolving complex | 4.33E-05 |
| 13 | GO:0009941: chloroplast envelope | 1.14E-04 |
| 14 | GO:0019898: extrinsic component of membrane | 1.33E-04 |
| 15 | GO:0009706: chloroplast inner membrane | 2.03E-04 |
| 16 | GO:0008290: F-actin capping protein complex | 4.10E-04 |
| 17 | GO:0030286: dynein complex | 1.27E-03 |
| 18 | GO:0009898: cytoplasmic side of plasma membrane | 1.27E-03 |
| 19 | GO:0009517: PSII associated light-harvesting complex II | 1.27E-03 |
| 20 | GO:0009523: photosystem II | 1.60E-03 |
| 21 | GO:0016020: membrane | 2.47E-03 |
| 22 | GO:0009986: cell surface | 2.80E-03 |
| 23 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 4.20E-03 |
| 24 | GO:0016324: apical plasma membrane | 5.24E-03 |
| 25 | GO:0032040: small-subunit processome | 6.35E-03 |
| 26 | GO:0031969: chloroplast membrane | 6.77E-03 |
| 27 | GO:0009508: plastid chromosome | 6.94E-03 |
| 28 | GO:0030076: light-harvesting complex | 8.18E-03 |
| 29 | GO:0042651: thylakoid membrane | 1.02E-02 |
| 30 | GO:0048046: apoplast | 1.55E-02 |
| 31 | GO:0005759: mitochondrial matrix | 1.58E-02 |
| 32 | GO:0009522: photosystem I | 1.62E-02 |
| 33 | GO:0005778: peroxisomal membrane | 2.14E-02 |
| 34 | GO:0009295: nucleoid | 2.14E-02 |
| 35 | GO:0009707: chloroplast outer membrane | 2.81E-02 |