co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019685: photosynthesis, dark reaction	0.00E+00
2	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0015882: L-ascorbic acid transport	0.00E+00
6	GO:0051246: regulation of protein metabolic process	0.00E+00
7	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
8	GO:0008298: intracellular mRNA localization	0.00E+00
9	GO:0006907: pinocytosis	0.00E+00
10	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
11	GO:0016123: xanthophyll biosynthetic process	1.75E-06
12	GO:0080005: photosystem stoichiometry adjustment	6.33E-06
13	GO:0015995: chlorophyll biosynthetic process	1.02E-05
14	GO:0071482: cellular response to light stimulus	1.98E-05
15	GO:0009658: chloroplast organization	3.51E-05
16	GO:0090307: mitotic spindle assembly	4.86E-05
17	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	4.86E-05
18	GO:2001141: regulation of RNA biosynthetic process	4.86E-05
19	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.86E-05
20	GO:0006352: DNA-templated transcription, initiation	5.94E-05
21	GO:0009902: chloroplast relocation	8.61E-05
22	GO:0009767: photosynthetic electron transport chain	9.04E-05
23	GO:0015979: photosynthesis	9.43E-05
24	GO:0016120: carotene biosynthetic process	1.34E-04
25	GO:0010019: chloroplast-nucleus signaling pathway	2.60E-04
26	GO:0010362: negative regulation of anion channel activity by blue light	3.75E-04
27	GO:0051418: microtubule nucleation by microtubule organizing center	3.75E-04
28	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.75E-04
29	GO:0031426: polycistronic mRNA processing	3.75E-04
30	GO:0071277: cellular response to calcium ion	3.75E-04
31	GO:1904966: positive regulation of vitamin E biosynthetic process	3.75E-04
32	GO:0010480: microsporocyte differentiation	3.75E-04
33	GO:1904964: positive regulation of phytol biosynthetic process	3.75E-04
34	GO:0042371: vitamin K biosynthetic process	3.75E-04
35	GO:0071454: cellular response to anoxia	3.75E-04
36	GO:0071461: cellular response to redox state	3.75E-04
37	GO:0034080: CENP-A containing nucleosome assembly	3.75E-04
38	GO:0010028: xanthophyll cycle	3.75E-04
39	GO:0048564: photosystem I assembly	4.22E-04
40	GO:0009657: plastid organization	5.17E-04
41	GO:0009451: RNA modification	5.21E-04
42	GO:0000373: Group II intron splicing	6.19E-04
43	GO:0009638: phototropism	7.31E-04
44	GO:0009098: leucine biosynthetic process	7.31E-04
45	GO:0033566: gamma-tubulin complex localization	8.15E-04
46	GO:0048255: mRNA stabilization	8.15E-04
47	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.15E-04
48	GO:0034755: iron ion transmembrane transport	8.15E-04
49	GO:0006435: threonyl-tRNA aminoacylation	8.15E-04
50	GO:0000256: allantoin catabolic process	8.15E-04
51	GO:0080153: negative regulation of reductive pentose-phosphate cycle	8.15E-04
52	GO:0010024: phytochromobilin biosynthetic process	8.15E-04
53	GO:0045037: protein import into chloroplast stroma	1.12E-03
54	GO:0006013: mannose metabolic process	1.32E-03
55	GO:0090391: granum assembly	1.32E-03
56	GO:0010136: ureide catabolic process	1.32E-03
57	GO:0018298: protein-chromophore linkage	1.32E-03
58	GO:0007052: mitotic spindle organization	1.32E-03
59	GO:0055114: oxidation-reduction process	1.49E-03
60	GO:0080167: response to karrikin	1.57E-03
61	GO:0010239: chloroplast mRNA processing	1.91E-03
62	GO:0006809: nitric oxide biosynthetic process	1.91E-03
63	GO:0006145: purine nucleobase catabolic process	1.91E-03
64	GO:0033014: tetrapyrrole biosynthetic process	1.91E-03
65	GO:0034508: centromere complex assembly	1.91E-03
66	GO:0009067: aspartate family amino acid biosynthetic process	1.91E-03
67	GO:0010371: regulation of gibberellin biosynthetic process	1.91E-03
68	GO:0007017: microtubule-based process	2.18E-03
69	GO:0042274: ribosomal small subunit biogenesis	2.56E-03
70	GO:0009765: photosynthesis, light harvesting	2.56E-03
71	GO:0031122: cytoplasmic microtubule organization	2.56E-03
72	GO:0071483: cellular response to blue light	2.56E-03
73	GO:0009793: embryo development ending in seed dormancy	3.01E-03
74	GO:0009616: virus induced gene silencing	3.28E-03
75	GO:0016558: protein import into peroxisome matrix	3.28E-03
76	GO:0008033: tRNA processing	3.64E-03
77	GO:0035194: posttranscriptional gene silencing by RNA	4.05E-03
78	GO:0010190: cytochrome b6f complex assembly	4.05E-03
79	GO:0000741: karyogamy	4.05E-03
80	GO:0009643: photosynthetic acclimation	4.05E-03
81	GO:0009791: post-embryonic development	4.53E-03
82	GO:0010193: response to ozone	4.84E-03
83	GO:0010189: vitamin E biosynthetic process	4.88E-03
84	GO:0009088: threonine biosynthetic process	4.88E-03
85	GO:0009772: photosynthetic electron transport in photosystem II	5.77E-03
86	GO:1900056: negative regulation of leaf senescence	5.77E-03
87	GO:0048437: floral organ development	5.77E-03
88	GO:0006401: RNA catabolic process	5.77E-03
89	GO:0006402: mRNA catabolic process	6.70E-03
90	GO:0042255: ribosome assembly	6.70E-03
91	GO:0006353: DNA-templated transcription, termination	6.70E-03
92	GO:0009704: de-etiolation	6.70E-03
93	GO:0022900: electron transport chain	7.69E-03
94	GO:0032544: plastid translation	7.69E-03
95	GO:0098656: anion transmembrane transport	8.73E-03
96	GO:0009051: pentose-phosphate shunt, oxidative branch	8.73E-03
97	GO:0006098: pentose-phosphate shunt	8.73E-03
98	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.73E-03
99	GO:0048507: meristem development	8.73E-03
100	GO:0090333: regulation of stomatal closure	8.73E-03
101	GO:0006783: heme biosynthetic process	8.73E-03
102	GO:0006779: porphyrin-containing compound biosynthetic process	9.82E-03
103	GO:0010380: regulation of chlorophyll biosynthetic process	9.82E-03
104	GO:0031425: chloroplast RNA processing	9.82E-03
105	GO:0051555: flavonol biosynthetic process	1.10E-02
106	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.10E-02
107	GO:0045036: protein targeting to chloroplast	1.10E-02
108	GO:0006949: syncytium formation	1.10E-02
109	GO:0006259: DNA metabolic process	1.10E-02
110	GO:0009773: photosynthetic electron transport in photosystem I	1.21E-02
111	GO:0008285: negative regulation of cell proliferation	1.21E-02
112	GO:0006265: DNA topological change	1.21E-02
113	GO:0009089: lysine biosynthetic process via diaminopimelate	1.21E-02
114	GO:0043085: positive regulation of catalytic activity	1.21E-02
115	GO:0006879: cellular iron ion homeostasis	1.21E-02
116	GO:0048229: gametophyte development	1.21E-02
117	GO:0006006: glucose metabolic process	1.46E-02
118	GO:0010075: regulation of meristem growth	1.46E-02
119	GO:0009725: response to hormone	1.46E-02
120	GO:0006094: gluconeogenesis	1.46E-02
121	GO:0009744: response to sucrose	1.51E-02
122	GO:0034605: cellular response to heat	1.59E-02
123	GO:0010207: photosystem II assembly	1.59E-02
124	GO:0019253: reductive pentose-phosphate cycle	1.59E-02
125	GO:0009934: regulation of meristem structural organization	1.59E-02
126	GO:0090351: seedling development	1.73E-02
127	GO:0006833: water transport	1.87E-02
128	GO:0080147: root hair cell development	2.01E-02
129	GO:0006289: nucleotide-excision repair	2.01E-02
130	GO:0006364: rRNA processing	2.03E-02
131	GO:0010073: meristem maintenance	2.15E-02
132	GO:0009735: response to cytokinin	2.44E-02
133	GO:0016226: iron-sulfur cluster assembly	2.46E-02
134	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.62E-02
135	GO:0010227: floral organ abscission	2.62E-02
136	GO:0016117: carotenoid biosynthetic process	2.94E-02
137	GO:0070417: cellular response to cold	2.94E-02
138	GO:0048653: anther development	3.11E-02
139	GO:0000226: microtubule cytoskeleton organization	3.11E-02
140	GO:0034220: ion transmembrane transport	3.11E-02
141	GO:0010118: stomatal movement	3.11E-02
142	GO:0009958: positive gravitropism	3.28E-02
143	GO:0010197: polar nucleus fusion	3.28E-02
144	GO:0048868: pollen tube development	3.28E-02
145	GO:0015986: ATP synthesis coupled proton transport	3.45E-02
146	GO:0007018: microtubule-based movement	3.45E-02
147	GO:0007059: chromosome segregation	3.45E-02
148	GO:0008654: phospholipid biosynthetic process	3.63E-02
149	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.81E-02
150	GO:0006635: fatty acid beta-oxidation	3.81E-02
151	GO:0010583: response to cyclopentenone	3.99E-02
152	GO:0016032: viral process	3.99E-02
153	GO:0019761: glucosinolate biosynthetic process	3.99E-02
154	GO:0032502: developmental process	3.99E-02
155	GO:0009790: embryo development	4.22E-02
156	GO:0009828: plant-type cell wall loosening	4.36E-02
157	GO:0071805: potassium ion transmembrane transport	4.55E-02
158	GO:0000910: cytokinesis	4.75E-02
159	GO:0016126: sterol biosynthetic process	4.94E-02
160	GO:0001666: response to hypoxia	4.94E-02
161	GO:0010027: thylakoid membrane organization	4.94E-02
162	GO:0007623: circadian rhythm	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0042623: ATPase activity, coupled	0.00E+00
4	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
5	GO:0010276: phytol kinase activity	0.00E+00
6	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
7	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
8	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
9	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
10	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
11	GO:1990534: thermospermine oxidase activity	0.00E+00
12	GO:0016987: sigma factor activity	7.77E-07
13	GO:0001053: plastid sigma factor activity	7.77E-07
14	GO:0003862: 3-isopropylmalate dehydrogenase activity	6.33E-06
15	GO:0004848: ureidoglycolate hydrolase activity	2.21E-05
16	GO:0016851: magnesium chelatase activity	4.86E-05
17	GO:0043015: gamma-tubulin binding	8.61E-05
18	GO:0016491: oxidoreductase activity	2.16E-04
19	GO:0019899: enzyme binding	3.37E-04
20	GO:0046906: tetrapyrrole binding	3.75E-04
21	GO:0004451: isocitrate lyase activity	3.75E-04
22	GO:0004325: ferrochelatase activity	3.75E-04
23	GO:0030941: chloroplast targeting sequence binding	3.75E-04
24	GO:0004654: polyribonucleotide nucleotidyltransferase activity	3.75E-04
25	GO:0010181: FMN binding	4.98E-04
26	GO:0004518: nuclease activity	6.47E-04
27	GO:0004829: threonine-tRNA ligase activity	8.15E-04
28	GO:0004180: carboxypeptidase activity	1.32E-03
29	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.32E-03
30	GO:0032947: protein complex scaffold	1.32E-03
31	GO:0004148: dihydrolipoyl dehydrogenase activity	1.32E-03
32	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.43E-03
33	GO:0004072: aspartate kinase activity	1.91E-03
34	GO:0048027: mRNA 5'-UTR binding	1.91E-03
35	GO:0009882: blue light photoreceptor activity	1.91E-03
36	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.56E-03
37	GO:0043495: protein anchor	2.56E-03
38	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	2.56E-03
39	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.56E-03
40	GO:0051861: glycolipid binding	2.56E-03
41	GO:0051537: 2 iron, 2 sulfur cluster binding	2.72E-03
42	GO:0022891: substrate-specific transmembrane transporter activity	2.86E-03
43	GO:0003727: single-stranded RNA binding	3.11E-03
44	GO:0051011: microtubule minus-end binding	3.28E-03
45	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.60E-03
46	GO:0004519: endonuclease activity	3.64E-03
47	GO:0004332: fructose-bisphosphate aldolase activity	4.05E-03
48	GO:0000293: ferric-chelate reductase activity	4.05E-03
49	GO:0004605: phosphatidate cytidylyltransferase activity	4.05E-03
50	GO:0003777: microtubule motor activity	4.11E-03
51	GO:0048038: quinone binding	4.84E-03
52	GO:0008195: phosphatidate phosphatase activity	4.88E-03
53	GO:0015631: tubulin binding	4.88E-03
54	GO:0004559: alpha-mannosidase activity	4.88E-03
55	GO:0016168: chlorophyll binding	7.42E-03
56	GO:0019843: rRNA binding	7.53E-03
57	GO:0003724: RNA helicase activity	7.69E-03
58	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	7.69E-03
59	GO:0005381: iron ion transmembrane transporter activity	9.82E-03
60	GO:0050897: cobalt ion binding	1.06E-02
61	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.21E-02
62	GO:0003723: RNA binding	1.38E-02
63	GO:0000175: 3'-5'-exoribonuclease activity	1.46E-02
64	GO:0008081: phosphoric diester hydrolase activity	1.46E-02
65	GO:0005315: inorganic phosphate transmembrane transporter activity	1.46E-02
66	GO:0000155: phosphorelay sensor kinase activity	1.46E-02
67	GO:0008131: primary amine oxidase activity	1.59E-02
68	GO:0043621: protein self-association	1.63E-02
69	GO:0008146: sulfotransferase activity	1.73E-02
70	GO:0051287: NAD binding	1.83E-02
71	GO:0051536: iron-sulfur cluster binding	2.01E-02
72	GO:0003690: double-stranded DNA binding	2.11E-02
73	GO:0015079: potassium ion transmembrane transporter activity	2.15E-02
74	GO:0033612: receptor serine/threonine kinase binding	2.30E-02
75	GO:0008514: organic anion transmembrane transporter activity	2.78E-02
76	GO:0008080: N-acetyltransferase activity	3.28E-02
77	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.28E-02
78	GO:0004872: receptor activity	3.63E-02
79	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.72E-02
80	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.81E-02
81	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.17E-02
82	GO:0008565: protein transporter activity	4.33E-02
83	GO:0008483: transaminase activity	4.55E-02
84	GO:0008237: metallopeptidase activity	4.55E-02
85	GO:0005200: structural constituent of cytoskeleton	4.55E-02
86	GO:0009055: electron carrier activity	4.58E-02
87	GO:0016597: amino acid binding	4.75E-02
88	GO:0015250: water channel activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.68E-35
2	GO:0009535: chloroplast thylakoid membrane	9.88E-15
3	GO:0009706: chloroplast inner membrane	8.34E-08
4	GO:0009570: chloroplast stroma	8.87E-08
5	GO:0008274: gamma-tubulin ring complex	6.33E-06
6	GO:0009579: thylakoid	1.15E-05
7	GO:0000923: equatorial microtubule organizing center	4.86E-05
8	GO:0009941: chloroplast envelope	6.39E-05
9	GO:0031969: chloroplast membrane	6.55E-05
10	GO:0030286: dynein complex	8.61E-05
11	GO:0009654: photosystem II oxygen evolving complex	2.04E-04
12	GO:0042651: thylakoid membrane	2.04E-04
13	GO:0031021: interphase microtubule organizing center	3.75E-04
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.19E-04
15	GO:0009534: chloroplast thylakoid	1.08E-03
16	GO:0005640: nuclear outer membrane	1.32E-03
17	GO:0010007: magnesium chelatase complex	1.32E-03
18	GO:0030095: chloroplast photosystem II	1.43E-03
19	GO:0009543: chloroplast thylakoid lumen	1.48E-03
20	GO:0009536: plastid	1.76E-03
21	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.56E-03
22	GO:0005828: kinetochore microtubule	2.56E-03
23	GO:0000930: gamma-tubulin complex	2.56E-03
24	GO:0072686: mitotic spindle	3.28E-03
25	GO:0000776: kinetochore	3.28E-03
26	GO:0055035: plastid thylakoid membrane	3.28E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.05E-03
28	GO:0009523: photosystem II	4.53E-03
29	GO:0019898: extrinsic component of membrane	4.53E-03
30	GO:0009840: chloroplastic endopeptidase Clp complex	4.88E-03
31	GO:0031359: integral component of chloroplast outer membrane	5.77E-03
32	GO:0009295: nucleoid	6.24E-03
33	GO:0009539: photosystem II reaction center	7.69E-03
34	GO:0005623: cell	7.79E-03
35	GO:0042644: chloroplast nucleoid	8.73E-03
36	GO:0000922: spindle pole	8.73E-03
37	GO:0009707: chloroplast outer membrane	9.17E-03
38	GO:0043231: intracellular membrane-bounded organelle	1.37E-02
39	GO:0031977: thylakoid lumen	1.39E-02
40	GO:0009508: plastid chromosome	1.46E-02
41	GO:0009574: preprophase band	1.46E-02
42	GO:0009505: plant-type cell wall	1.55E-02
43	GO:0043234: protein complex	1.87E-02
44	GO:0005875: microtubule associated complex	1.87E-02
45	GO:0005874: microtubule	2.48E-02
46	GO:0005871: kinesin complex	2.94E-02
47	GO:0010319: stromule	4.55E-02
48	GO:0005778: peroxisomal membrane	4.55E-02