co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
2	GO:0006907: pinocytosis	0.00E+00
3	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
4	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
5	GO:0007037: vacuolar phosphate transport	0.00E+00
6	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
7	GO:0016123: xanthophyll biosynthetic process	2.97E-07
8	GO:0016120: carotene biosynthetic process	4.37E-05
9	GO:0010190: cytochrome b6f complex assembly	6.48E-05
10	GO:1904966: positive regulation of vitamin E biosynthetic process	1.91E-04
11	GO:0071806: protein transmembrane transport	1.91E-04
12	GO:1904964: positive regulation of phytol biosynthetic process	1.91E-04
13	GO:0042371: vitamin K biosynthetic process	1.91E-04
14	GO:0071454: cellular response to anoxia	1.91E-04
15	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.29E-04
16	GO:0080153: negative regulation of reductive pentose-phosphate cycle	4.29E-04
17	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.29E-04
18	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.29E-04
19	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	4.29E-04
20	GO:0045037: protein import into chloroplast stroma	4.34E-04
21	GO:0009767: photosynthetic electron transport chain	4.93E-04
22	GO:0019253: reductive pentose-phosphate cycle	5.55E-04
23	GO:0090351: seedling development	6.22E-04
24	GO:0001578: microtubule bundle formation	6.99E-04
25	GO:0006013: mannose metabolic process	6.99E-04
26	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.97E-04
27	GO:0009102: biotin biosynthetic process	9.97E-04
28	GO:0090307: mitotic spindle assembly	9.97E-04
29	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	9.97E-04
30	GO:0033014: tetrapyrrole biosynthetic process	9.97E-04
31	GO:0009658: chloroplast organization	1.05E-03
32	GO:0071483: cellular response to blue light	1.32E-03
33	GO:0042274: ribosomal small subunit biogenesis	1.32E-03
34	GO:0051322: anaphase	1.32E-03
35	GO:0031935: regulation of chromatin silencing	1.32E-03
36	GO:0009765: photosynthesis, light harvesting	1.32E-03
37	GO:0007020: microtubule nucleation	1.32E-03
38	GO:0031122: cytoplasmic microtubule organization	1.32E-03
39	GO:0045038: protein import into chloroplast thylakoid membrane	1.68E-03
40	GO:0046785: microtubule polymerization	1.68E-03
41	GO:0015979: photosynthesis	1.77E-03
42	GO:0009643: photosynthetic acclimation	2.07E-03
43	GO:0000910: cytokinesis	2.48E-03
44	GO:0015977: carbon fixation	2.49E-03
45	GO:0017148: negative regulation of translation	2.49E-03
46	GO:0016126: sterol biosynthetic process	2.63E-03
47	GO:0006401: RNA catabolic process	2.93E-03
48	GO:0048528: post-embryonic root development	2.93E-03
49	GO:0009772: photosynthetic electron transport in photosystem II	2.93E-03
50	GO:1900056: negative regulation of leaf senescence	2.93E-03
51	GO:0080111: DNA demethylation	2.93E-03
52	GO:0006605: protein targeting	3.40E-03
53	GO:0048564: photosystem I assembly	3.40E-03
54	GO:0006402: mRNA catabolic process	3.40E-03
55	GO:0032544: plastid translation	3.88E-03
56	GO:0071482: cellular response to light stimulus	3.88E-03
57	GO:0022900: electron transport chain	3.88E-03
58	GO:0006783: heme biosynthetic process	4.40E-03
59	GO:0000373: Group II intron splicing	4.40E-03
60	GO:0009245: lipid A biosynthetic process	4.40E-03
61	GO:0006779: porphyrin-containing compound biosynthetic process	4.93E-03
62	GO:0010380: regulation of chlorophyll biosynthetic process	4.93E-03
63	GO:0031425: chloroplast RNA processing	4.93E-03
64	GO:0045036: protein targeting to chloroplast	5.48E-03
65	GO:0009870: defense response signaling pathway, resistance gene-dependent	5.48E-03
66	GO:0009744: response to sucrose	5.57E-03
67	GO:0006352: DNA-templated transcription, initiation	6.06E-03
68	GO:0009773: photosynthetic electron transport in photosystem I	6.06E-03
69	GO:0009725: response to hormone	7.28E-03
70	GO:0080167: response to karrikin	7.38E-03
71	GO:0006364: rRNA processing	7.50E-03
72	GO:0034605: cellular response to heat	7.91E-03
73	GO:0010207: photosystem II assembly	7.91E-03
74	GO:0006863: purine nucleobase transport	9.25E-03
75	GO:0006289: nucleotide-excision repair	9.94E-03
76	GO:0043622: cortical microtubule organization	1.07E-02
77	GO:0007017: microtubule-based process	1.07E-02
78	GO:0080092: regulation of pollen tube growth	1.21E-02
79	GO:0016226: iron-sulfur cluster assembly	1.21E-02
80	GO:0016117: carotenoid biosynthetic process	1.45E-02
81	GO:0070417: cellular response to cold	1.45E-02
82	GO:0008033: tRNA processing	1.53E-02
83	GO:0009790: embryo development	1.57E-02
84	GO:0048868: pollen tube development	1.62E-02
85	GO:0009958: positive gravitropism	1.62E-02
86	GO:0015986: ATP synthesis coupled proton transport	1.70E-02
87	GO:0007018: microtubule-based movement	1.70E-02
88	GO:0009791: post-embryonic development	1.79E-02
89	GO:0071554: cell wall organization or biogenesis	1.88E-02
90	GO:0010193: response to ozone	1.88E-02
91	GO:0009451: RNA modification	1.90E-02
92	GO:0016032: viral process	1.97E-02
93	GO:0009793: embryo development ending in seed dormancy	2.20E-02
94	GO:0009816: defense response to bacterium, incompatible interaction	2.54E-02
95	GO:0015995: chlorophyll biosynthetic process	2.74E-02
96	GO:0042254: ribosome biogenesis	2.93E-02
97	GO:0018298: protein-chromophore linkage	2.95E-02
98	GO:0010218: response to far red light	3.16E-02
99	GO:0006811: ion transport	3.16E-02
100	GO:0006810: transport	3.21E-02
101	GO:0007568: aging	3.27E-02
102	GO:0009910: negative regulation of flower development	3.27E-02
103	GO:0009637: response to blue light	3.49E-02
104	GO:0009853: photorespiration	3.49E-02
105	GO:0010114: response to red light	4.18E-02
106	GO:0008283: cell proliferation	4.18E-02
107	GO:0009644: response to high light intensity	4.41E-02
108	GO:0006260: DNA replication	4.78E-02
109	GO:0042538: hyperosmotic salinity response	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0030941: chloroplast targeting sequence binding	1.91E-04
6	GO:0004654: polyribonucleotide nucleotidyltransferase activity	1.91E-04
7	GO:0004325: ferrochelatase activity	1.91E-04
8	GO:0032947: protein complex scaffold	6.99E-04
9	GO:0004848: ureidoglycolate hydrolase activity	6.99E-04
10	GO:0051537: 2 iron, 2 sulfur cluster binding	7.92E-04
11	GO:0043023: ribosomal large subunit binding	9.97E-04
12	GO:0016984: ribulose-bisphosphate carboxylase activity	9.97E-04
13	GO:0000254: C-4 methylsterol oxidase activity	9.97E-04
14	GO:0016851: magnesium chelatase activity	9.97E-04
15	GO:0001053: plastid sigma factor activity	1.32E-03
16	GO:0051861: glycolipid binding	1.32E-03
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.32E-03
18	GO:0016987: sigma factor activity	1.32E-03
19	GO:0043015: gamma-tubulin binding	1.32E-03
20	GO:0043495: protein anchor	1.32E-03
21	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.32E-03
22	GO:0008374: O-acyltransferase activity	1.68E-03
23	GO:0051011: microtubule minus-end binding	1.68E-03
24	GO:0048038: quinone binding	1.83E-03
25	GO:0031177: phosphopantetheine binding	2.07E-03
26	GO:0019843: rRNA binding	2.14E-03
27	GO:0004559: alpha-mannosidase activity	2.49E-03
28	GO:0015631: tubulin binding	2.49E-03
29	GO:0000035: acyl binding	2.49E-03
30	GO:0019899: enzyme binding	2.93E-03
31	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.40E-03
32	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.06E-03
33	GO:0000175: 3'-5'-exoribonuclease activity	7.28E-03
34	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.91E-03
35	GO:0003777: microtubule motor activity	8.31E-03
36	GO:0016491: oxidoreductase activity	8.35E-03
37	GO:0003887: DNA-directed DNA polymerase activity	9.25E-03
38	GO:0051536: iron-sulfur cluster binding	9.94E-03
39	GO:0005528: FK506 binding	9.94E-03
40	GO:0005345: purine nucleobase transmembrane transporter activity	1.07E-02
41	GO:0022891: substrate-specific transmembrane transporter activity	1.29E-02
42	GO:0009055: electron carrier activity	1.32E-02
43	GO:0003674: molecular_function	1.51E-02
44	GO:0008565: protein transporter activity	1.61E-02
45	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.62E-02
46	GO:0004872: receptor activity	1.79E-02
47	GO:0008017: microtubule binding	1.94E-02
48	GO:0004518: nuclease activity	1.97E-02
49	GO:0005200: structural constituent of cytoskeleton	2.25E-02
50	GO:0008483: transaminase activity	2.25E-02
51	GO:0016413: O-acetyltransferase activity	2.34E-02
52	GO:0042802: identical protein binding	2.36E-02
53	GO:0016168: chlorophyll binding	2.54E-02
54	GO:0004601: peroxidase activity	2.87E-02
55	GO:0016740: transferase activity	3.20E-02
56	GO:0003746: translation elongation factor activity	3.49E-02
57	GO:0051539: 4 iron, 4 sulfur cluster binding	3.83E-02
58	GO:0005198: structural molecule activity	4.54E-02
59	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.48E-24
2	GO:0009535: chloroplast thylakoid membrane	9.61E-14
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.26E-06
4	GO:0009570: chloroplast stroma	3.67E-05
5	GO:0009543: chloroplast thylakoid lumen	3.28E-04
6	GO:0080085: signal recognition particle, chloroplast targeting	4.29E-04
7	GO:0008274: gamma-tubulin ring complex	4.29E-04
8	GO:0009508: plastid chromosome	4.93E-04
9	GO:0009579: thylakoid	4.97E-04
10	GO:0009528: plastid inner membrane	6.99E-04
11	GO:0009573: chloroplast ribulose bisphosphate carboxylase complex	6.99E-04
12	GO:0009654: photosystem II oxygen evolving complex	8.41E-04
13	GO:0042651: thylakoid membrane	8.41E-04
14	GO:0000923: equatorial microtubule organizing center	9.97E-04
15	GO:0030286: dynein complex	1.32E-03
16	GO:0009941: chloroplast envelope	1.40E-03
17	GO:0031969: chloroplast membrane	1.45E-03
18	GO:0009706: chloroplast inner membrane	1.61E-03
19	GO:0055035: plastid thylakoid membrane	1.68E-03
20	GO:0072686: mitotic spindle	1.68E-03
21	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.07E-03
22	GO:0005623: cell	2.22E-03
23	GO:0009295: nucleoid	2.34E-03
24	GO:0010005: cortical microtubule, transverse to long axis	2.49E-03
25	GO:0009840: chloroplastic endopeptidase Clp complex	2.49E-03
26	GO:0031359: integral component of chloroplast outer membrane	2.93E-03
27	GO:0000123: histone acetyltransferase complex	2.93E-03
28	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.88E-03
29	GO:0046930: pore complex	3.88E-03
30	GO:0009539: photosystem II reaction center	3.88E-03
31	GO:0000922: spindle pole	4.40E-03
32	GO:0055028: cortical microtubule	5.48E-03
33	GO:0016324: apical plasma membrane	5.48E-03
34	GO:0005874: microtubule	7.06E-03
35	GO:0005938: cell cortex	7.28E-03
36	GO:0009574: preprophase band	7.28E-03
37	GO:0009536: plastid	7.38E-03
38	GO:0009505: plant-type cell wall	7.66E-03
39	GO:0030095: chloroplast photosystem II	7.91E-03
40	GO:0005875: microtubule associated complex	9.25E-03
41	GO:0043234: protein complex	9.25E-03
42	GO:0005871: kinesin complex	1.45E-02
43	GO:0009523: photosystem II	1.79E-02
44	GO:0019898: extrinsic component of membrane	1.79E-02
45	GO:0010319: stromule	2.25E-02
46	GO:0009707: chloroplast outer membrane	2.95E-02
47	GO:0009534: chloroplast thylakoid	3.16E-02
48	GO:0005819: spindle	3.71E-02
49	GO:0031977: thylakoid lumen	3.94E-02
50	GO:0031966: mitochondrial membrane	4.90E-02