co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G37550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0010336: gibberellic acid homeostasis	0.00E+00
3	GO:0009902: chloroplast relocation	1.95E-08
4	GO:0071483: cellular response to blue light	7.45E-06
5	GO:0010236: plastoquinone biosynthetic process	1.24E-05
6	GO:0009903: chloroplast avoidance movement	2.69E-05
7	GO:0046467: membrane lipid biosynthetic process	8.96E-05
8	GO:0071461: cellular response to redox state	8.96E-05
9	GO:0010362: negative regulation of anion channel activity by blue light	8.96E-05
10	GO:0010036: response to boron-containing substance	8.96E-05
11	GO:1902265: abscisic acid homeostasis	8.96E-05
12	GO:0009637: response to blue light	1.30E-04
13	GO:0009658: chloroplast organization	2.07E-04
14	GO:0007154: cell communication	2.12E-04
15	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	2.12E-04
16	GO:0043100: pyrimidine nucleobase salvage	2.12E-04
17	GO:0042754: negative regulation of circadian rhythm	2.12E-04
18	GO:0006898: receptor-mediated endocytosis	2.12E-04
19	GO:0080005: photosystem stoichiometry adjustment	2.12E-04
20	GO:0008299: isoprenoid biosynthetic process	3.07E-04
21	GO:0044375: regulation of peroxisome size	3.54E-04
22	GO:0031022: nuclear migration along microfilament	3.54E-04
23	GO:2001141: regulation of RNA biosynthetic process	5.10E-04
24	GO:0046713: borate transport	5.10E-04
25	GO:0010371: regulation of gibberellin biosynthetic process	5.10E-04
26	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.10E-04
27	GO:0009113: purine nucleobase biosynthetic process	5.10E-04
28	GO:0006546: glycine catabolic process	6.78E-04
29	GO:0019464: glycine decarboxylation via glycine cleavage system	6.78E-04
30	GO:0071585: detoxification of cadmium ion	6.78E-04
31	GO:0009904: chloroplast accumulation movement	8.59E-04
32	GO:0071805: potassium ion transmembrane transport	8.61E-04
33	GO:0007623: circadian rhythm	8.76E-04
34	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.05E-03
35	GO:0006555: methionine metabolic process	1.05E-03
36	GO:0015995: chlorophyll biosynthetic process	1.12E-03
37	GO:0010189: vitamin E biosynthetic process	1.25E-03
38	GO:0010019: chloroplast-nucleus signaling pathway	1.25E-03
39	GO:0009648: photoperiodism	1.25E-03
40	GO:0019509: L-methionine salvage from methylthioadenosine	1.25E-03
41	GO:0009396: folic acid-containing compound biosynthetic process	1.46E-03
42	GO:0070370: cellular heat acclimation	1.46E-03
43	GO:0009231: riboflavin biosynthetic process	1.69E-03
44	GO:0016559: peroxisome fission	1.69E-03
45	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.69E-03
46	GO:0030091: protein repair	1.69E-03
47	GO:0010100: negative regulation of photomorphogenesis	1.93E-03
48	GO:0009932: cell tip growth	1.93E-03
49	GO:0071482: cellular response to light stimulus	1.93E-03
50	GO:0048574: long-day photoperiodism, flowering	1.93E-03
51	GO:0034765: regulation of ion transmembrane transport	2.18E-03
52	GO:0051453: regulation of intracellular pH	2.43E-03
53	GO:0009638: phototropism	2.43E-03
54	GO:0035999: tetrahydrofolate interconversion	2.43E-03
55	GO:0051555: flavonol biosynthetic process	2.70E-03
56	GO:0009970: cellular response to sulfate starvation	2.70E-03
57	GO:0006995: cellular response to nitrogen starvation	2.70E-03
58	GO:0009909: regulation of flower development	2.96E-03
59	GO:0043085: positive regulation of catalytic activity	2.98E-03
60	GO:0006352: DNA-templated transcription, initiation	2.98E-03
61	GO:0016485: protein processing	2.98E-03
62	GO:0008285: negative regulation of cell proliferation	2.98E-03
63	GO:0009767: photosynthetic electron transport chain	3.56E-03
64	GO:0030048: actin filament-based movement	3.56E-03
65	GO:0007015: actin filament organization	3.86E-03
66	GO:0007031: peroxisome organization	4.18E-03
67	GO:0006071: glycerol metabolic process	4.50E-03
68	GO:0051017: actin filament bundle assembly	4.83E-03
69	GO:0010073: meristem maintenance	5.17E-03
70	GO:0006508: proteolysis	5.84E-03
71	GO:0010227: floral organ abscission	6.23E-03
72	GO:0009693: ethylene biosynthetic process	6.23E-03
73	GO:0006817: phosphate ion transport	6.61E-03
74	GO:0009416: response to light stimulus	6.66E-03
75	GO:0010118: stomatal movement	7.37E-03
76	GO:0042391: regulation of membrane potential	7.37E-03
77	GO:0010182: sugar mediated signaling pathway	7.77E-03
78	GO:0006520: cellular amino acid metabolic process	7.77E-03
79	GO:0042752: regulation of circadian rhythm	8.17E-03
80	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	8.99E-03
81	GO:0006464: cellular protein modification process	1.03E-02
82	GO:0009567: double fertilization forming a zygote and endosperm	1.03E-02
83	GO:0010029: regulation of seed germination	1.21E-02
84	GO:0042128: nitrate assimilation	1.26E-02
85	GO:0018298: protein-chromophore linkage	1.41E-02
86	GO:0008219: cell death	1.41E-02
87	GO:0015979: photosynthesis	1.43E-02
88	GO:0000160: phosphorelay signal transduction system	1.46E-02
89	GO:0045454: cell redox homeostasis	1.50E-02
90	GO:0006811: ion transport	1.51E-02
91	GO:0010043: response to zinc ion	1.56E-02
92	GO:0007568: aging	1.56E-02
93	GO:0034599: cellular response to oxidative stress	1.72E-02
94	GO:0009408: response to heat	1.86E-02
95	GO:0042542: response to hydrogen peroxide	1.93E-02
96	GO:0009640: photomorphogenesis	1.99E-02
97	GO:0042538: hyperosmotic salinity response	2.34E-02
98	GO:0009409: response to cold	2.39E-02
99	GO:0009585: red, far-red light phototransduction	2.46E-02
100	GO:0006813: potassium ion transport	2.46E-02
101	GO:0051603: proteolysis involved in cellular protein catabolic process	2.52E-02
102	GO:0006857: oligopeptide transport	2.58E-02
103	GO:0009735: response to cytokinin	3.01E-02
104	GO:0035556: intracellular signal transduction	3.48E-02
105	GO:0009058: biosynthetic process	3.85E-02
106	GO:0042744: hydrogen peroxide catabolic process	4.07E-02
107	GO:0009737: response to abscisic acid	4.19E-02
108	GO:0016036: cellular response to phosphate starvation	4.44E-02
109	GO:0010228: vegetative to reproductive phase transition of meristem	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
2	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
3	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
4	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
5	GO:0050347: trans-octaprenyltranstransferase activity	4.31E-07
6	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	4.31E-07
7	GO:0004180: carboxypeptidase activity	1.64E-06
8	GO:0042802: identical protein binding	1.09E-05
9	GO:0008236: serine-type peptidase activity	8.48E-05
10	GO:0080139: borate efflux transmembrane transporter activity	8.96E-05
11	GO:0016783: sulfurtransferase activity	8.96E-05
12	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	8.96E-05
13	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	8.96E-05
14	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	8.96E-05
15	GO:0046906: tetrapyrrole binding	8.96E-05
16	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	8.96E-05
17	GO:0004329: formate-tetrahydrofolate ligase activity	2.12E-04
18	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.12E-04
19	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	2.12E-04
20	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	2.12E-04
21	GO:0004046: aminoacylase activity	2.12E-04
22	GO:0004096: catalase activity	3.54E-04
23	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	3.54E-04
24	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.54E-04
25	GO:0003935: GTP cyclohydrolase II activity	3.54E-04
26	GO:0004792: thiosulfate sulfurtransferase activity	5.10E-04
27	GO:0046715: borate transmembrane transporter activity	5.10E-04
28	GO:0009882: blue light photoreceptor activity	5.10E-04
29	GO:0004375: glycine dehydrogenase (decarboxylating) activity	5.10E-04
30	GO:0001053: plastid sigma factor activity	6.78E-04
31	GO:0016987: sigma factor activity	6.78E-04
32	GO:0015301: anion:anion antiporter activity	8.59E-04
33	GO:0005452: inorganic anion exchanger activity	8.59E-04
34	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.05E-03
35	GO:0004709: MAP kinase kinase kinase activity	1.05E-03
36	GO:0000293: ferric-chelate reductase activity	1.05E-03
37	GO:0005242: inward rectifier potassium channel activity	1.25E-03
38	GO:0019899: enzyme binding	1.46E-03
39	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.69E-03
40	GO:0000989: transcription factor activity, transcription factor binding	2.18E-03
41	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.18E-03
42	GO:0005315: inorganic phosphate transmembrane transporter activity	3.56E-03
43	GO:0031072: heat shock protein binding	3.56E-03
44	GO:0000155: phosphorelay sensor kinase activity	3.56E-03
45	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.56E-03
46	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.86E-03
47	GO:0015079: potassium ion transmembrane transporter activity	5.17E-03
48	GO:0004176: ATP-dependent peptidase activity	5.52E-03
49	GO:0005249: voltage-gated potassium channel activity	7.37E-03
50	GO:0030551: cyclic nucleotide binding	7.37E-03
51	GO:0008080: N-acetyltransferase activity	7.77E-03
52	GO:0010181: FMN binding	8.17E-03
53	GO:0016791: phosphatase activity	1.03E-02
54	GO:0008483: transaminase activity	1.07E-02
55	GO:0008237: metallopeptidase activity	1.07E-02
56	GO:0004721: phosphoprotein phosphatase activity	1.31E-02
57	GO:0030247: polysaccharide binding	1.31E-02
58	GO:0004222: metalloendopeptidase activity	1.51E-02
59	GO:0030145: manganese ion binding	1.56E-02
60	GO:0050897: cobalt ion binding	1.56E-02
61	GO:0004871: signal transducer activity	1.58E-02
62	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.66E-02
63	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.77E-02
64	GO:0004185: serine-type carboxypeptidase activity	1.99E-02
65	GO:0051537: 2 iron, 2 sulfur cluster binding	2.10E-02
66	GO:0015293: symporter activity	2.16E-02
67	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.46E-02
68	GO:0004672: protein kinase activity	2.65E-02
69	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.84E-02
70	GO:0016887: ATPase activity	2.88E-02
71	GO:0020037: heme binding	2.89E-02
72	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.96E-02
73	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.96E-02
74	GO:0051082: unfolded protein binding	3.16E-02
75	GO:0015035: protein disulfide oxidoreductase activity	3.23E-02
76	GO:0016746: transferase activity, transferring acyl groups	3.23E-02
77	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.78E-02
78	GO:0030170: pyridoxal phosphate binding	4.00E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0009507: chloroplast	1.96E-08
3	GO:0043674: columella	8.96E-05
4	GO:0005777: peroxisome	2.97E-04
5	GO:0016328: lateral plasma membrane	3.54E-04
6	GO:0005960: glycine cleavage complex	5.10E-04
7	GO:0009526: plastid envelope	6.78E-04
8	GO:0031982: vesicle	1.69E-03
9	GO:0009514: glyoxysome	1.93E-03
10	GO:0005779: integral component of peroxisomal membrane	1.93E-03
11	GO:0031969: chloroplast membrane	1.97E-03
12	GO:0005884: actin filament	2.98E-03
13	GO:0009706: chloroplast inner membrane	3.79E-03
14	GO:0005773: vacuole	4.72E-03
15	GO:0009536: plastid	5.08E-03
16	GO:0042651: thylakoid membrane	5.17E-03
17	GO:0009532: plastid stroma	5.52E-03
18	GO:0005774: vacuolar membrane	7.20E-03
19	GO:0005778: peroxisomal membrane	1.07E-02
20	GO:0010319: stromule	1.07E-02
21	GO:0009941: chloroplast envelope	1.22E-02
22	GO:0009505: plant-type cell wall	2.17E-02
23	GO:0005887: integral component of plasma membrane	2.52E-02
24	GO:0005834: heterotrimeric G-protein complex	2.90E-02
25	GO:0005623: cell	3.78E-02
26	GO:0009535: chloroplast thylakoid membrane	4.45E-02