Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G37200

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0098586: cellular response to virus0.00E+00
3GO:0042304: regulation of fatty acid biosynthetic process0.00E+00
4GO:0033231: carbohydrate export0.00E+00
5GO:0090470: shoot organ boundary specification0.00E+00
6GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
7GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
8GO:0017009: protein-phycocyanobilin linkage0.00E+00
9GO:1900088: regulation of inositol biosynthetic process0.00E+00
10GO:0010477: response to sulfur dioxide0.00E+00
11GO:1901965: endoplasmic reticulum to chloroplast transport0.00E+00
12GO:0009661: chromoplast organization0.00E+00
13GO:0005997: xylulose metabolic process0.00E+00
14GO:0051246: regulation of protein metabolic process0.00E+00
15GO:1900091: regulation of raffinose biosynthetic process0.00E+00
16GO:2000013: regulation of arginine biosynthetic process via ornithine0.00E+00
17GO:0016120: carotene biosynthetic process1.16E-06
18GO:0080005: photosystem stoichiometry adjustment4.70E-06
19GO:0015995: chlorophyll biosynthetic process5.75E-06
20GO:0006013: mannose metabolic process1.67E-05
21GO:0009658: chloroplast organization1.75E-05
22GO:0016226: iron-sulfur cluster assembly1.93E-04
23GO:0016117: carotenoid biosynthetic process2.74E-04
24GO:0006430: lysyl-tRNA aminoacylation3.22E-04
25GO:0080065: 4-alpha-methyl-delta7-sterol oxidation3.22E-04
26GO:1902334: fructose export from vacuole to cytoplasm3.22E-04
27GO:0010362: negative regulation of anion channel activity by blue light3.22E-04
28GO:0015755: fructose transport3.22E-04
29GO:0019646: aerobic electron transport chain3.22E-04
30GO:0031426: polycistronic mRNA processing3.22E-04
31GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.22E-04
32GO:1990052: ER to chloroplast lipid transport3.22E-04
33GO:0071806: protein transmembrane transport3.22E-04
34GO:0015798: myo-inositol transport3.22E-04
35GO:0071461: cellular response to redox state3.22E-04
36GO:0032956: regulation of actin cytoskeleton organization3.22E-04
37GO:0071482: cellular response to light stimulus4.12E-04
38GO:0009657: plastid organization4.12E-04
39GO:0055114: oxidation-reduction process5.06E-04
40GO:0080185: effector dependent induction by symbiont of host immune response7.02E-04
41GO:0046741: transport of virus in host, tissue to tissue7.02E-04
42GO:2000030: regulation of response to red or far red light7.02E-04
43GO:0048314: embryo sac morphogenesis7.02E-04
44GO:0000256: allantoin catabolic process7.02E-04
45GO:0034755: iron ion transmembrane transport7.02E-04
46GO:2000071: regulation of defense response by callose deposition7.02E-04
47GO:0048571: long-day photoperiodism7.02E-04
48GO:1904143: positive regulation of carotenoid biosynthetic process7.02E-04
49GO:0006879: cellular iron ion homeostasis7.88E-04
50GO:0006790: sulfur compound metabolic process8.99E-04
51GO:0018298: protein-chromophore linkage9.92E-04
52GO:0009767: photosynthetic electron transport chain1.02E-03
53GO:0005986: sucrose biosynthetic process1.02E-03
54GO:0019419: sulfate reduction1.14E-03
55GO:0010136: ureide catabolic process1.14E-03
56GO:0008652: cellular amino acid biosynthetic process1.14E-03
57GO:0009150: purine ribonucleotide metabolic process1.14E-03
58GO:0031929: TOR signaling1.14E-03
59GO:0006696: ergosterol biosynthetic process1.14E-03
60GO:0071836: nectar secretion1.14E-03
61GO:0071484: cellular response to light intensity1.63E-03
62GO:0010239: chloroplast mRNA processing1.63E-03
63GO:0006809: nitric oxide biosynthetic process1.63E-03
64GO:0006145: purine nucleobase catabolic process1.63E-03
65GO:0050482: arachidonic acid secretion1.63E-03
66GO:0043572: plastid fission1.63E-03
67GO:2001141: regulation of RNA biosynthetic process1.63E-03
68GO:0009067: aspartate family amino acid biosynthetic process1.63E-03
69GO:0010371: regulation of gibberellin biosynthetic process1.63E-03
70GO:0009644: response to high light intensity2.03E-03
71GO:2000022: regulation of jasmonic acid mediated signaling pathway2.09E-03
72GO:0015743: malate transport2.19E-03
73GO:0042274: ribosomal small subunit biogenesis2.19E-03
74GO:0015994: chlorophyll metabolic process2.19E-03
75GO:0006552: leucine catabolic process2.19E-03
76GO:0009902: chloroplast relocation2.19E-03
77GO:0010021: amylopectin biosynthetic process2.19E-03
78GO:0006808: regulation of nitrogen utilization2.19E-03
79GO:0070534: protein K63-linked ubiquitination2.19E-03
80GO:0031347: regulation of defense response2.35E-03
81GO:0010117: photoprotection2.80E-03
82GO:0045038: protein import into chloroplast thylakoid membrane2.80E-03
83GO:0010118: stomatal movement2.89E-03
84GO:0006555: methionine metabolic process3.46E-03
85GO:0010190: cytochrome b6f complex assembly3.46E-03
86GO:0033365: protein localization to organelle3.46E-03
87GO:0009117: nucleotide metabolic process3.46E-03
88GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.46E-03
89GO:0006301: postreplication repair3.46E-03
90GO:0009791: post-embryonic development3.60E-03
91GO:0019509: L-methionine salvage from methylthioadenosine4.17E-03
92GO:0042372: phylloquinone biosynthetic process4.17E-03
93GO:0010189: vitamin E biosynthetic process4.17E-03
94GO:0010019: chloroplast-nucleus signaling pathway4.17E-03
95GO:0048528: post-embryonic root development4.92E-03
96GO:1900056: negative regulation of leaf senescence4.92E-03
97GO:0010038: response to metal ion4.92E-03
98GO:0050790: regulation of catalytic activity4.92E-03
99GO:0006644: phospholipid metabolic process5.71E-03
100GO:0048564: photosystem I assembly5.71E-03
101GO:0009787: regulation of abscisic acid-activated signaling pathway5.71E-03
102GO:0006605: protein targeting5.71E-03
103GO:0009704: de-etiolation5.71E-03
104GO:0050821: protein stabilization5.71E-03
105GO:0009231: riboflavin biosynthetic process5.71E-03
106GO:0006102: isocitrate metabolic process5.71E-03
107GO:0019430: removal of superoxide radicals6.55E-03
108GO:0032544: plastid translation6.55E-03
109GO:0009821: alkaloid biosynthetic process7.42E-03
110GO:0090305: nucleic acid phosphodiester bond hydrolysis7.42E-03
111GO:0046916: cellular transition metal ion homeostasis7.42E-03
112GO:0048507: meristem development7.42E-03
113GO:0006783: heme biosynthetic process7.42E-03
114GO:0009638: phototropism8.34E-03
115GO:0006779: porphyrin-containing compound biosynthetic process8.34E-03
116GO:0010380: regulation of chlorophyll biosynthetic process8.34E-03
117GO:1900426: positive regulation of defense response to bacterium8.34E-03
118GO:0010043: response to zinc ion8.41E-03
119GO:0007568: aging8.41E-03
120GO:0007623: circadian rhythm8.46E-03
121GO:0006508: proteolysis8.88E-03
122GO:0006457: protein folding8.96E-03
123GO:0006259: DNA metabolic process9.30E-03
124GO:0006782: protoporphyrinogen IX biosynthetic process9.30E-03
125GO:0006995: cellular response to nitrogen starvation9.30E-03
126GO:0000103: sulfate assimilation9.30E-03
127GO:0045036: protein targeting to chloroplast9.30E-03
128GO:0006265: DNA topological change1.03E-02
129GO:0009773: photosynthetic electron transport in photosystem I1.03E-02
130GO:0009682: induced systemic resistance1.03E-02
131GO:0043085: positive regulation of catalytic activity1.03E-02
132GO:0008285: negative regulation of cell proliferation1.03E-02
133GO:1903507: negative regulation of nucleic acid-templated transcription1.03E-02
134GO:0006352: DNA-templated transcription, initiation1.03E-02
135GO:0009750: response to fructose1.03E-02
136GO:0016485: protein processing1.03E-02
137GO:0006829: zinc II ion transport1.24E-02
138GO:0006807: nitrogen compound metabolic process1.24E-02
139GO:0009718: anthocyanin-containing compound biosynthetic process1.24E-02
140GO:0010207: photosystem II assembly1.35E-02
141GO:0010020: chloroplast fission1.35E-02
142GO:0090351: seedling development1.46E-02
143GO:0006071: glycerol metabolic process1.58E-02
144GO:0019344: cysteine biosynthetic process1.70E-02
145GO:0006417: regulation of translation1.79E-02
146GO:0051302: regulation of cell division1.83E-02
147GO:0006418: tRNA aminoacylation for protein translation1.83E-02
148GO:0007017: microtubule-based process1.83E-02
149GO:0010073: meristem maintenance1.83E-02
150GO:0051321: meiotic cell cycle1.95E-02
151GO:0006366: transcription from RNA polymerase II promoter1.95E-02
152GO:0051260: protein homooligomerization1.95E-02
153GO:0035428: hexose transmembrane transport2.08E-02
154GO:0010227: floral organ abscission2.22E-02
155GO:0006817: phosphate ion transport2.35E-02
156GO:0070417: cellular response to cold2.49E-02
157GO:0042335: cuticle development2.63E-02
158GO:0009741: response to brassinosteroid2.78E-02
159GO:0010182: sugar mediated signaling pathway2.78E-02
160GO:0046323: glucose import2.78E-02
161GO:0007059: chromosome segregation2.92E-02
162GO:0009646: response to absence of light2.92E-02
163GO:0006814: sodium ion transport2.92E-02
164GO:0019252: starch biosynthetic process3.07E-02
165GO:0000302: response to reactive oxygen species3.23E-02
166GO:0002229: defense response to oomycetes3.23E-02
167GO:0010193: response to ozone3.23E-02
168GO:0030163: protein catabolic process3.54E-02
169GO:0010228: vegetative to reproductive phase transition of meristem4.14E-02
170GO:0016126: sterol biosynthetic process4.19E-02
171GO:0010027: thylakoid membrane organization4.19E-02
172GO:0009816: defense response to bacterium, incompatible interaction4.36E-02
173GO:0042128: nitrate assimilation4.53E-02
174GO:0006950: response to stress4.71E-02
175GO:0010468: regulation of gene expression4.72E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0050342: tocopherol O-methyltransferase activity0.00E+00
4GO:0016719: carotene 7,8-desaturase activity0.00E+00
5GO:0045436: lycopene beta cyclase activity0.00E+00
6GO:0010307: acetylglutamate kinase regulator activity0.00E+00
7GO:0043530: adenosine 5'-monophosphoramidase activity0.00E+00
8GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
9GO:0022883: zinc efflux transmembrane transporter activity0.00E+00
10GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
11GO:0047710: bis(5'-adenosyl)-triphosphatase activity0.00E+00
12GO:0046905: phytoene synthase activity0.00E+00
13GO:0008482: sulfite oxidase activity0.00E+00
14GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
15GO:0015284: fructose uniporter activity0.00E+00
16GO:0004180: carboxypeptidase activity1.67E-05
17GO:0003913: DNA photolyase activity1.67E-05
18GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.67E-05
19GO:0047627: adenylylsulfatase activity3.71E-05
20GO:0004559: alpha-mannosidase activity2.05E-04
21GO:0035671: enone reductase activity3.22E-04
22GO:0046906: tetrapyrrole binding3.22E-04
23GO:0004824: lysine-tRNA ligase activity3.22E-04
24GO:0004856: xylulokinase activity3.22E-04
25GO:0016783: sulfurtransferase activity3.22E-04
26GO:0051996: squalene synthase activity3.22E-04
27GO:0030941: chloroplast targeting sequence binding3.22E-04
28GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.22E-04
29GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.22E-04
30GO:0004485: methylcrotonoyl-CoA carboxylase activity3.22E-04
31GO:0016491: oxidoreductase activity3.75E-04
32GO:0048038: quinone binding4.44E-04
33GO:0033741: adenylyl-sulfate reductase (glutathione) activity7.02E-04
34GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity7.02E-04
35GO:0004047: aminomethyltransferase activity7.02E-04
36GO:0033201: alpha-1,4-glucan synthase activity7.02E-04
37GO:0009973: adenylyl-sulfate reductase activity7.02E-04
38GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity7.02E-04
39GO:0005353: fructose transmembrane transporter activity7.02E-04
40GO:0004412: homoserine dehydrogenase activity7.02E-04
41GO:0004046: aminoacylase activity7.02E-04
42GO:0004450: isocitrate dehydrogenase (NADP+) activity7.02E-04
43GO:0004310: farnesyl-diphosphate farnesyltransferase activity7.02E-04
44GO:0005366: myo-inositol:proton symporter activity7.02E-04
45GO:0015367: oxoglutarate:malate antiporter activity7.02E-04
46GO:0008883: glutamyl-tRNA reductase activity7.02E-04
47GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.14E-03
48GO:0010277: chlorophyllide a oxygenase [overall] activity1.14E-03
49GO:0046524: sucrose-phosphate synthase activity1.14E-03
50GO:0004373: glycogen (starch) synthase activity1.14E-03
51GO:0032947: protein complex scaffold1.14E-03
52GO:0004848: ureidoglycolate hydrolase activity1.14E-03
53GO:0008253: 5'-nucleotidase activity1.14E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity1.14E-03
55GO:0050307: sucrose-phosphate phosphatase activity1.14E-03
56GO:0004075: biotin carboxylase activity1.14E-03
57GO:0004557: alpha-galactosidase activity1.14E-03
58GO:0003935: GTP cyclohydrolase II activity1.14E-03
59GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.63E-03
60GO:0000254: C-4 methylsterol oxidase activity1.63E-03
61GO:0048027: mRNA 5'-UTR binding1.63E-03
62GO:0004416: hydroxyacylglutathione hydrolase activity1.63E-03
63GO:0004792: thiosulfate sulfurtransferase activity1.63E-03
64GO:0016851: magnesium chelatase activity1.63E-03
65GO:0009882: blue light photoreceptor activity1.63E-03
66GO:0001053: plastid sigma factor activity2.19E-03
67GO:0005319: lipid transporter activity2.19E-03
68GO:0051861: glycolipid binding2.19E-03
69GO:0016987: sigma factor activity2.19E-03
70GO:0009011: starch synthase activity2.19E-03
71GO:0004623: phospholipase A2 activity2.80E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor2.80E-03
73GO:0030151: molybdenum ion binding2.80E-03
74GO:0008080: N-acetyltransferase activity3.12E-03
75GO:0010181: FMN binding3.35E-03
76GO:0004709: MAP kinase kinase kinase activity3.46E-03
77GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity3.46E-03
78GO:0000293: ferric-chelate reductase activity3.46E-03
79GO:0004784: superoxide dismutase activity3.46E-03
80GO:0016157: sucrose synthase activity4.17E-03
81GO:0016887: ATPase activity4.50E-03
82GO:0016621: cinnamoyl-CoA reductase activity4.92E-03
83GO:0009881: photoreceptor activity4.92E-03
84GO:0019899: enzyme binding4.92E-03
85GO:0008237: metallopeptidase activity4.95E-03
86GO:0046914: transition metal ion binding6.55E-03
87GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity6.55E-03
88GO:0008236: serine-type peptidase activity6.91E-03
89GO:0008889: glycerophosphodiester phosphodiesterase activity7.42E-03
90GO:0071949: FAD binding7.42E-03
91GO:0005381: iron ion transmembrane transporter activity8.34E-03
92GO:0045309: protein phosphorylated amino acid binding8.34E-03
93GO:0016844: strictosidine synthase activity8.34E-03
94GO:0050897: cobalt ion binding8.41E-03
95GO:0019904: protein domain specific binding1.03E-02
96GO:0015266: protein channel activity1.24E-02
97GO:0005315: inorganic phosphate transmembrane transporter activity1.24E-02
98GO:0031072: heat shock protein binding1.24E-02
99GO:0000155: phosphorelay sensor kinase activity1.24E-02
100GO:0000287: magnesium ion binding1.44E-02
101GO:0051119: sugar transmembrane transporter activity1.46E-02
102GO:0005515: protein binding1.61E-02
103GO:0003954: NADH dehydrogenase activity1.70E-02
104GO:0001046: core promoter sequence-specific DNA binding1.70E-02
105GO:0003714: transcription corepressor activity1.70E-02
106GO:0051536: iron-sulfur cluster binding1.70E-02
107GO:0031625: ubiquitin protein ligase binding1.79E-02
108GO:0005506: iron ion binding1.89E-02
109GO:0008233: peptidase activity1.90E-02
110GO:0004176: ATP-dependent peptidase activity1.95E-02
111GO:0061630: ubiquitin protein ligase activity2.07E-02
112GO:0022891: substrate-specific transmembrane transporter activity2.22E-02
113GO:0051082: unfolded protein binding2.30E-02
114GO:0003727: single-stranded RNA binding2.35E-02
115GO:0004812: aminoacyl-tRNA ligase activity2.49E-02
116GO:0005355: glucose transmembrane transporter activity2.92E-02
117GO:0050662: coenzyme binding2.92E-02
118GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.95E-02
119GO:0004518: nuclease activity3.38E-02
120GO:0004197: cysteine-type endopeptidase activity3.38E-02
121GO:0015144: carbohydrate transmembrane transporter activity3.44E-02
122GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.54E-02
123GO:0016791: phosphatase activity3.70E-02
124GO:0005351: sugar:proton symporter activity3.87E-02
125GO:0016168: chlorophyll binding4.36E-02
126GO:0004721: phosphoprotein phosphatase activity4.71E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.78E-29
2GO:0009535: chloroplast thylakoid membrane2.57E-07
3GO:0031969: chloroplast membrane3.09E-07
4GO:0009706: chloroplast inner membrane1.10E-04
5GO:0009941: chloroplast envelope2.34E-04
6GO:0005759: mitochondrial matrix2.74E-04
7GO:0009570: chloroplast stroma2.92E-04
8GO:0031972: chloroplast intermembrane space3.22E-04
9GO:0031932: TORC2 complex3.22E-04
10GO:0005739: mitochondrion4.86E-04
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.95E-04
12GO:0009534: chloroplast thylakoid6.48E-04
13GO:0045254: pyruvate dehydrogenase complex7.02E-04
14GO:0031304: intrinsic component of mitochondrial inner membrane7.02E-04
15GO:0080085: signal recognition particle, chloroplast targeting7.02E-04
16GO:0009528: plastid inner membrane1.14E-03
17GO:0010007: magnesium chelatase complex1.14E-03
18GO:0009509: chromoplast1.14E-03
19GO:0031931: TORC1 complex1.14E-03
20GO:0009527: plastid outer membrane2.19E-03
21GO:0030286: dynein complex2.19E-03
22GO:0031372: UBC13-MMS2 complex2.19E-03
23GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.19E-03
24GO:0009536: plastid3.14E-03
25GO:0005747: mitochondrial respiratory chain complex I3.47E-03
26GO:0031359: integral component of chloroplast outer membrane4.92E-03
27GO:0010287: plastoglobule5.24E-03
28GO:0005773: vacuole5.70E-03
29GO:0009501: amyloplast5.71E-03
30GO:0005623: cell5.80E-03
31GO:0005786: signal recognition particle, endoplasmic reticulum targeting6.55E-03
32GO:0005777: peroxisome7.27E-03
33GO:0009707: chloroplast outer membrane7.27E-03
34GO:0042644: chloroplast nucleoid7.42E-03
35GO:0009705: plant-type vacuole membrane8.46E-03
36GO:0005764: lysosome1.35E-02
37GO:0031966: mitochondrial membrane1.50E-02
38GO:0043234: protein complex1.58E-02
39GO:0005875: microtubule associated complex1.58E-02
40GO:0042651: thylakoid membrane1.83E-02
41GO:0045271: respiratory chain complex I1.83E-02
42GO:0009532: plastid stroma1.95E-02
43GO:0005744: mitochondrial inner membrane presequence translocase complex2.35E-02
44GO:0009523: photosystem II3.07E-02
45GO:0010319: stromule3.86E-02
46GO:0009295: nucleoid3.86E-02
47GO:0005778: peroxisomal membrane3.86E-02
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Gene type



Gene DE type