co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G36190

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
3	GO:0009661: chromoplast organization	0.00E+00
4	GO:0009902: chloroplast relocation	2.85E-07
5	GO:0010190: cytochrome b6f complex assembly	1.05E-04
6	GO:0009903: chloroplast avoidance movement	1.45E-04
7	GO:0010362: negative regulation of anion channel activity by blue light	2.57E-04
8	GO:1902265: abscisic acid homeostasis	2.57E-04
9	GO:0006285: base-excision repair, AP site formation	2.57E-04
10	GO:0071461: cellular response to redox state	2.57E-04
11	GO:0048438: floral whorl development	2.57E-04
12	GO:0006430: lysyl-tRNA aminoacylation	2.57E-04
13	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.57E-04
14	GO:0055114: oxidation-reduction process	4.95E-04
15	GO:0009970: cellular response to sulfate starvation	4.99E-04
16	GO:0000103: sulfate assimilation	4.99E-04
17	GO:2000030: regulation of response to red or far red light	5.68E-04
18	GO:0080005: photosystem stoichiometry adjustment	5.68E-04
19	GO:0006898: receptor-mediated endocytosis	5.68E-04
20	GO:0019388: galactose catabolic process	5.68E-04
21	GO:0007154: cell communication	5.68E-04
22	GO:0000256: allantoin catabolic process	5.68E-04
23	GO:0010220: positive regulation of vernalization response	5.68E-04
24	GO:1904143: positive regulation of carotenoid biosynthetic process	5.68E-04
25	GO:0080183: response to photooxidative stress	5.68E-04
26	GO:0043100: pyrimidine nucleobase salvage	5.68E-04
27	GO:0042754: negative regulation of circadian rhythm	5.68E-04
28	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.68E-04
29	GO:0005986: sucrose biosynthetic process	7.47E-04
30	GO:0019419: sulfate reduction	9.22E-04
31	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	9.22E-04
32	GO:0006013: mannose metabolic process	9.22E-04
33	GO:0044210: 'de novo' CTP biosynthetic process	9.22E-04
34	GO:0010136: ureide catabolic process	9.22E-04
35	GO:1901562: response to paraquat	9.22E-04
36	GO:0009150: purine ribonucleotide metabolic process	9.22E-04
37	GO:0006696: ergosterol biosynthetic process	9.22E-04
38	GO:0071836: nectar secretion	9.22E-04
39	GO:0044375: regulation of peroxisome size	9.22E-04
40	GO:0016570: histone modification	9.22E-04
41	GO:0031022: nuclear migration along microfilament	9.22E-04
42	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.32E-03
43	GO:0006145: purine nucleobase catabolic process	1.32E-03
44	GO:0010148: transpiration	1.32E-03
45	GO:0009590: detection of gravity	1.32E-03
46	GO:0050482: arachidonic acid secretion	1.32E-03
47	GO:2001141: regulation of RNA biosynthetic process	1.32E-03
48	GO:0010371: regulation of gibberellin biosynthetic process	1.32E-03
49	GO:0016226: iron-sulfur cluster assembly	1.52E-03
50	GO:0071585: detoxification of cadmium ion	1.76E-03
51	GO:0071483: cellular response to blue light	1.76E-03
52	GO:0010021: amylopectin biosynthetic process	1.76E-03
53	GO:0009658: chloroplast organization	2.02E-03
54	GO:0016120: carotene biosynthetic process	2.25E-03
55	GO:0009904: chloroplast accumulation movement	2.25E-03
56	GO:0010236: plastoquinone biosynthetic process	2.25E-03
57	GO:0019252: starch biosynthetic process	2.61E-03
58	GO:0000060: protein import into nucleus, translocation	2.77E-03
59	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.77E-03
60	GO:0006555: methionine metabolic process	2.77E-03
61	GO:0070814: hydrogen sulfide biosynthetic process	2.77E-03
62	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.79E-03
63	GO:0010076: maintenance of floral meristem identity	3.33E-03
64	GO:0017148: negative regulation of translation	3.33E-03
65	GO:0010189: vitamin E biosynthetic process	3.33E-03
66	GO:0009648: photoperiodism	3.33E-03
67	GO:0010077: maintenance of inflorescence meristem identity	3.33E-03
68	GO:0019509: L-methionine salvage from methylthioadenosine	3.33E-03
69	GO:0045454: cell redox homeostasis	3.69E-03
70	GO:0010038: response to metal ion	3.93E-03
71	GO:0050790: regulation of catalytic activity	3.93E-03
72	GO:0010161: red light signaling pathway	3.93E-03
73	GO:0006368: transcription elongation from RNA polymerase II promoter	3.93E-03
74	GO:0005978: glycogen biosynthetic process	4.56E-03
75	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.56E-03
76	GO:0030091: protein repair	4.56E-03
77	GO:0050821: protein stabilization	4.56E-03
78	GO:0000105: histidine biosynthetic process	4.56E-03
79	GO:0009231: riboflavin biosynthetic process	4.56E-03
80	GO:0006102: isocitrate metabolic process	4.56E-03
81	GO:0016559: peroxisome fission	4.56E-03
82	GO:0006644: phospholipid metabolic process	4.56E-03
83	GO:0048564: photosystem I assembly	4.56E-03
84	GO:0048574: long-day photoperiodism, flowering	5.22E-03
85	GO:0071482: cellular response to light stimulus	5.22E-03
86	GO:0015996: chlorophyll catabolic process	5.22E-03
87	GO:0018298: protein-chromophore linkage	5.25E-03
88	GO:0007623: circadian rhythm	5.59E-03
89	GO:0009821: alkaloid biosynthetic process	5.92E-03
90	GO:0034765: regulation of ion transmembrane transport	5.92E-03
91	GO:0009739: response to gibberellin	6.44E-03
92	GO:0009638: phototropism	6.64E-03
93	GO:0009637: response to blue light	6.65E-03
94	GO:0006995: cellular response to nitrogen starvation	7.40E-03
95	GO:0045036: protein targeting to chloroplast	7.40E-03
96	GO:0008285: negative regulation of cell proliferation	8.19E-03
97	GO:0006879: cellular iron ion homeostasis	8.19E-03
98	GO:0006352: DNA-templated transcription, initiation	8.19E-03
99	GO:0000272: polysaccharide catabolic process	8.19E-03
100	GO:0048229: gametophyte development	8.19E-03
101	GO:0016485: protein processing	8.19E-03
102	GO:0010152: pollen maturation	9.00E-03
103	GO:0010582: floral meristem determinacy	9.00E-03
104	GO:0006790: sulfur compound metabolic process	9.00E-03
105	GO:0030048: actin filament-based movement	9.85E-03
106	GO:0009785: blue light signaling pathway	9.85E-03
107	GO:0006006: glucose metabolic process	9.85E-03
108	GO:0009767: photosynthetic electron transport chain	9.85E-03
109	GO:0010207: photosystem II assembly	1.07E-02
110	GO:0007015: actin filament organization	1.07E-02
111	GO:0006508: proteolysis	1.12E-02
112	GO:0007031: peroxisome organization	1.16E-02
113	GO:0006071: glycerol metabolic process	1.25E-02
114	GO:0035556: intracellular signal transduction	1.31E-02
115	GO:0051017: actin filament bundle assembly	1.35E-02
116	GO:0019344: cysteine biosynthetic process	1.35E-02
117	GO:0008299: isoprenoid biosynthetic process	1.45E-02
118	GO:0006418: tRNA aminoacylation for protein translation	1.45E-02
119	GO:0010073: meristem maintenance	1.45E-02
120	GO:0031408: oxylipin biosynthetic process	1.55E-02
121	GO:0006366: transcription from RNA polymerase II promoter	1.55E-02
122	GO:0040007: growth	1.76E-02
123	GO:0010227: floral organ abscission	1.76E-02
124	GO:0006817: phosphate ion transport	1.86E-02
125	GO:0006284: base-excision repair	1.86E-02
126	GO:0016117: carotenoid biosynthetic process	1.97E-02
127	GO:0042335: cuticle development	2.09E-02
128	GO:0042391: regulation of membrane potential	2.09E-02
129	GO:0010118: stomatal movement	2.09E-02
130	GO:0006662: glycerol ether metabolic process	2.20E-02
131	GO:0010182: sugar mediated signaling pathway	2.20E-02
132	GO:0009741: response to brassinosteroid	2.20E-02
133	GO:0009753: response to jasmonic acid	2.29E-02
134	GO:0042752: regulation of circadian rhythm	2.32E-02
135	GO:0046686: response to cadmium ion	2.36E-02
136	GO:0009791: post-embryonic development	2.43E-02
137	GO:0009556: microsporogenesis	2.43E-02
138	GO:0030163: protein catabolic process	2.80E-02
139	GO:0006464: cellular protein modification process	2.93E-02
140	GO:0009567: double fertilization forming a zygote and endosperm	2.93E-02
141	GO:0010228: vegetative to reproductive phase transition of meristem	3.00E-02
142	GO:0071805: potassium ion transmembrane transport	3.06E-02
143	GO:0016126: sterol biosynthetic process	3.32E-02
144	GO:0010029: regulation of seed germination	3.46E-02
145	GO:0009816: defense response to bacterium, incompatible interaction	3.46E-02
146	GO:0042128: nitrate assimilation	3.59E-02
147	GO:0015995: chlorophyll biosynthetic process	3.73E-02
148	GO:0010411: xyloglucan metabolic process	3.73E-02
149	GO:0006950: response to stress	3.73E-02
150	GO:0048481: plant ovule development	4.01E-02
151	GO:0008219: cell death	4.01E-02
152	GO:0000160: phosphorelay signal transduction system	4.16E-02
153	GO:0009407: toxin catabolic process	4.30E-02
154	GO:0006811: ion transport	4.30E-02
155	GO:0010043: response to zinc ion	4.45E-02
156	GO:0007568: aging	4.45E-02
157	GO:0034599: cellular response to oxidative stress	4.90E-02
158	GO:0006099: tricarboxylic acid cycle	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
2	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
3	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
4	GO:0046905: phytoene synthase activity	0.00E+00
5	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
8	GO:0016491: oxidoreductase activity	4.93E-06
9	GO:0003913: DNA photolyase activity	1.11E-05
10	GO:0008106: alcohol dehydrogenase (NADP+) activity	2.51E-05
11	GO:0016783: sulfurtransferase activity	2.57E-04
12	GO:0051996: squalene synthase activity	2.57E-04
13	GO:0010313: phytochrome binding	2.57E-04
14	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	2.57E-04
15	GO:0004328: formamidase activity	2.57E-04
16	GO:0003879: ATP phosphoribosyltransferase activity	2.57E-04
17	GO:0030941: chloroplast targeting sequence binding	2.57E-04
18	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.57E-04
19	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.57E-04
20	GO:0004824: lysine-tRNA ligase activity	2.57E-04
21	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.57E-04
22	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	5.68E-04
23	GO:0009973: adenylyl-sulfate reductase activity	5.68E-04
24	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	5.68E-04
25	GO:0004046: aminoacylase activity	5.68E-04
26	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	5.68E-04
27	GO:0003988: acetyl-CoA C-acyltransferase activity	5.68E-04
28	GO:0004614: phosphoglucomutase activity	5.68E-04
29	GO:0004450: isocitrate dehydrogenase (NADP+) activity	5.68E-04
30	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.68E-04
31	GO:0016868: intramolecular transferase activity, phosphotransferases	5.68E-04
32	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	5.68E-04
33	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.68E-04
34	GO:0033201: alpha-1,4-glucan synthase activity	5.68E-04
35	GO:0050347: trans-octaprenyltranstransferase activity	5.68E-04
36	GO:0004373: glycogen (starch) synthase activity	9.22E-04
37	GO:0032947: protein complex scaffold	9.22E-04
38	GO:0004848: ureidoglycolate hydrolase activity	9.22E-04
39	GO:0004557: alpha-galactosidase activity	9.22E-04
40	GO:0003935: GTP cyclohydrolase II activity	9.22E-04
41	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.22E-04
42	GO:0050307: sucrose-phosphate phosphatase activity	9.22E-04
43	GO:0004781: sulfate adenylyltransferase (ATP) activity	9.22E-04
44	GO:0004096: catalase activity	9.22E-04
45	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	9.22E-04
46	GO:0004180: carboxypeptidase activity	9.22E-04
47	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	9.22E-04
48	GO:0046524: sucrose-phosphate synthase activity	9.22E-04
49	GO:0048027: mRNA 5'-UTR binding	1.32E-03
50	GO:0004416: hydroxyacylglutathione hydrolase activity	1.32E-03
51	GO:0004792: thiosulfate sulfurtransferase activity	1.32E-03
52	GO:0003883: CTP synthase activity	1.32E-03
53	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.32E-03
54	GO:0009882: blue light photoreceptor activity	1.32E-03
55	GO:0047627: adenylylsulfatase activity	1.32E-03
56	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.32E-03
57	GO:0000254: C-4 methylsterol oxidase activity	1.32E-03
58	GO:0016987: sigma factor activity	1.76E-03
59	GO:0009011: starch synthase activity	1.76E-03
60	GO:0001053: plastid sigma factor activity	1.76E-03
61	GO:0051861: glycolipid binding	1.76E-03
62	GO:0019104: DNA N-glycosylase activity	1.76E-03
63	GO:0000287: magnesium ion binding	1.96E-03
64	GO:0004623: phospholipase A2 activity	2.25E-03
65	GO:0010181: FMN binding	2.43E-03
66	GO:0000293: ferric-chelate reductase activity	2.77E-03
67	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.77E-03
68	GO:2001070: starch binding	2.77E-03
69	GO:0004709: MAP kinase kinase kinase activity	2.77E-03
70	GO:0048038: quinone binding	2.79E-03
71	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.18E-03
72	GO:0016161: beta-amylase activity	3.33E-03
73	GO:0004559: alpha-mannosidase activity	3.33E-03
74	GO:0016157: sucrose synthase activity	3.33E-03
75	GO:0005242: inward rectifier potassium channel activity	3.33E-03
76	GO:0008237: metallopeptidase activity	3.59E-03
77	GO:0016621: cinnamoyl-CoA reductase activity	3.93E-03
78	GO:0009881: photoreceptor activity	3.93E-03
79	GO:0008236: serine-type peptidase activity	4.99E-03
80	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.92E-03
81	GO:0071949: FAD binding	5.92E-03
82	GO:0016844: strictosidine synthase activity	6.64E-03
83	GO:0042802: identical protein binding	7.58E-03
84	GO:0015293: symporter activity	9.66E-03
85	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.85E-03
86	GO:0005315: inorganic phosphate transmembrane transporter activity	9.85E-03
87	GO:0031072: heat shock protein binding	9.85E-03
88	GO:0000155: phosphorelay sensor kinase activity	9.85E-03
89	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.07E-02
90	GO:0001046: core promoter sequence-specific DNA binding	1.35E-02
91	GO:0051536: iron-sulfur cluster binding	1.35E-02
92	GO:0004176: ATP-dependent peptidase activity	1.55E-02
93	GO:0033612: receptor serine/threonine kinase binding	1.55E-02
94	GO:0015035: protein disulfide oxidoreductase activity	1.70E-02
95	GO:0047134: protein-disulfide reductase activity	1.97E-02
96	GO:0004812: aminoacyl-tRNA ligase activity	1.97E-02
97	GO:0030551: cyclic nucleotide binding	2.09E-02
98	GO:0005249: voltage-gated potassium channel activity	2.09E-02
99	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.20E-02
100	GO:0008080: N-acetyltransferase activity	2.20E-02
101	GO:0050662: coenzyme binding	2.32E-02
102	GO:0004791: thioredoxin-disulfide reductase activity	2.32E-02
103	GO:0004518: nuclease activity	2.68E-02
104	GO:0004197: cysteine-type endopeptidase activity	2.68E-02
105	GO:0016791: phosphatase activity	2.93E-02
106	GO:0016413: O-acetyltransferase activity	3.19E-02
107	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.64E-02
108	GO:0004721: phosphoprotein phosphatase activity	3.73E-02
109	GO:0030247: polysaccharide binding	3.73E-02
110	GO:0004222: metalloendopeptidase activity	4.30E-02
111	GO:0050897: cobalt ion binding	4.45E-02
112	GO:0030145: manganese ion binding	4.45E-02
113	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.45E-02
114	GO:0016788: hydrolase activity, acting on ester bonds	4.50E-02
115	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.68E-16
2	GO:0005777: peroxisome	7.50E-06
3	GO:0031969: chloroplast membrane	1.24E-05
4	GO:0009535: chloroplast thylakoid membrane	1.95E-04
5	GO:0031972: chloroplast intermembrane space	2.57E-04
6	GO:0045254: pyruvate dehydrogenase complex	5.68E-04
7	GO:0009570: chloroplast stroma	6.43E-04
8	GO:0009526: plastid envelope	1.76E-03
9	GO:0016593: Cdc73/Paf1 complex	1.76E-03
10	GO:0005773: vacuole	2.31E-03
11	GO:0010287: plastoglobule	3.46E-03
12	GO:0010319: stromule	3.59E-03
13	GO:0031359: integral component of chloroplast outer membrane	3.93E-03
14	GO:0031982: vesicle	4.56E-03
15	GO:0009501: amyloplast	4.56E-03
16	GO:0005779: integral component of peroxisomal membrane	5.22E-03
17	GO:0009514: glyoxysome	5.22E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.92E-03
19	GO:0042644: chloroplast nucleoid	5.92E-03
20	GO:0005884: actin filament	8.19E-03
21	GO:0005764: lysosome	1.07E-02
22	GO:0009532: plastid stroma	1.55E-02
23	GO:0009706: chloroplast inner membrane	1.65E-02
24	GO:0005759: mitochondrial matrix	2.61E-02
25	GO:0005778: peroxisomal membrane	3.06E-02
26	GO:0009707: chloroplast outer membrane	4.01E-02
27	GO:0005829: cytosol	4.19E-02