GO Enrichment Analysis of Co-expressed Genes with
AT4G36130
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 6 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 7 | GO:0006412: translation | 2.00E-73 |
| 8 | GO:0042254: ribosome biogenesis | 1.77E-24 |
| 9 | GO:0006364: rRNA processing | 4.96E-11 |
| 10 | GO:0006626: protein targeting to mitochondrion | 9.80E-09 |
| 11 | GO:0000470: maturation of LSU-rRNA | 1.14E-06 |
| 12 | GO:0000027: ribosomal large subunit assembly | 2.18E-06 |
| 13 | GO:0010162: seed dormancy process | 1.77E-05 |
| 14 | GO:0000460: maturation of 5.8S rRNA | 4.26E-05 |
| 15 | GO:0042274: ribosomal small subunit biogenesis | 4.26E-05 |
| 16 | GO:0009735: response to cytokinin | 1.33E-04 |
| 17 | GO:0006413: translational initiation | 1.35E-04 |
| 18 | GO:0009955: adaxial/abaxial pattern specification | 1.37E-04 |
| 19 | GO:0000028: ribosomal small subunit assembly | 2.28E-04 |
| 20 | GO:0006169: adenosine salvage | 2.48E-04 |
| 21 | GO:0006407: rRNA export from nucleus | 2.48E-04 |
| 22 | GO:0031120: snRNA pseudouridine synthesis | 2.48E-04 |
| 23 | GO:0000469: cleavage involved in rRNA processing | 2.48E-04 |
| 24 | GO:0031118: rRNA pseudouridine synthesis | 2.48E-04 |
| 25 | GO:0030490: maturation of SSU-rRNA | 2.48E-04 |
| 26 | GO:0000494: box C/D snoRNA 3'-end processing | 2.48E-04 |
| 27 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.48E-04 |
| 28 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.48E-04 |
| 29 | GO:0019877: diaminopimelate biosynthetic process | 2.48E-04 |
| 30 | GO:0043985: histone H4-R3 methylation | 2.48E-04 |
| 31 | GO:1990258: histone glutamine methylation | 2.48E-04 |
| 32 | GO:0009553: embryo sac development | 3.98E-04 |
| 33 | GO:0006913: nucleocytoplasmic transport | 5.47E-04 |
| 34 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 5.49E-04 |
| 35 | GO:0034470: ncRNA processing | 5.49E-04 |
| 36 | GO:0048569: post-embryonic animal organ development | 5.49E-04 |
| 37 | GO:0009967: positive regulation of signal transduction | 5.49E-04 |
| 38 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.49E-04 |
| 39 | GO:1902626: assembly of large subunit precursor of preribosome | 8.92E-04 |
| 40 | GO:0042256: mature ribosome assembly | 8.92E-04 |
| 41 | GO:0045039: protein import into mitochondrial inner membrane | 8.92E-04 |
| 42 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.09E-03 |
| 43 | GO:0030150: protein import into mitochondrial matrix | 1.09E-03 |
| 44 | GO:0006986: response to unfolded protein | 1.27E-03 |
| 45 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.27E-03 |
| 46 | GO:0010971: positive regulation of G2/M transition of mitotic cell cycle | 1.27E-03 |
| 47 | GO:0006164: purine nucleotide biosynthetic process | 1.27E-03 |
| 48 | GO:0009855: determination of bilateral symmetry | 1.27E-03 |
| 49 | GO:0009294: DNA mediated transformation | 1.57E-03 |
| 50 | GO:0071215: cellular response to abscisic acid stimulus | 1.57E-03 |
| 51 | GO:0051781: positive regulation of cell division | 1.70E-03 |
| 52 | GO:0042273: ribosomal large subunit biogenesis | 1.70E-03 |
| 53 | GO:0010197: polar nucleus fusion | 2.15E-03 |
| 54 | GO:0044209: AMP salvage | 2.17E-03 |
| 55 | GO:0031167: rRNA methylation | 2.17E-03 |
| 56 | GO:0045040: protein import into mitochondrial outer membrane | 2.67E-03 |
| 57 | GO:0016070: RNA metabolic process | 2.67E-03 |
| 58 | GO:0000741: karyogamy | 2.67E-03 |
| 59 | GO:0000054: ribosomal subunit export from nucleus | 3.21E-03 |
| 60 | GO:1900057: positive regulation of leaf senescence | 3.79E-03 |
| 61 | GO:0080186: developmental vegetative growth | 3.79E-03 |
| 62 | GO:0001558: regulation of cell growth | 5.03E-03 |
| 63 | GO:0010204: defense response signaling pathway, resistance gene-independent | 5.03E-03 |
| 64 | GO:0022900: electron transport chain | 5.03E-03 |
| 65 | GO:0001510: RNA methylation | 5.03E-03 |
| 66 | GO:0006189: 'de novo' IMP biosynthetic process | 5.70E-03 |
| 67 | GO:0007338: single fertilization | 5.70E-03 |
| 68 | GO:0048507: meristem development | 5.70E-03 |
| 69 | GO:0006099: tricarboxylic acid cycle | 6.59E-03 |
| 70 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 7.12E-03 |
| 71 | GO:0030422: production of siRNA involved in RNA interference | 7.12E-03 |
| 72 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.88E-03 |
| 73 | GO:0010015: root morphogenesis | 7.88E-03 |
| 74 | GO:0006820: anion transport | 8.66E-03 |
| 75 | GO:0006108: malate metabolic process | 9.47E-03 |
| 76 | GO:0010030: positive regulation of seed germination | 1.12E-02 |
| 77 | GO:0051302: regulation of cell division | 1.39E-02 |
| 78 | GO:0016569: covalent chromatin modification | 1.47E-02 |
| 79 | GO:0015992: proton transport | 1.49E-02 |
| 80 | GO:0009793: embryo development ending in seed dormancy | 1.54E-02 |
| 81 | GO:0007005: mitochondrion organization | 1.59E-02 |
| 82 | GO:0040007: growth | 1.69E-02 |
| 83 | GO:0009561: megagametogenesis | 1.79E-02 |
| 84 | GO:0000398: mRNA splicing, via spliceosome | 1.81E-02 |
| 85 | GO:0008033: tRNA processing | 2.01E-02 |
| 86 | GO:0000413: protein peptidyl-prolyl isomerization | 2.01E-02 |
| 87 | GO:0006414: translational elongation | 2.03E-02 |
| 88 | GO:0009960: endosperm development | 2.12E-02 |
| 89 | GO:0016032: viral process | 2.58E-02 |
| 90 | GO:0032502: developmental process | 2.58E-02 |
| 91 | GO:0009567: double fertilization forming a zygote and endosperm | 2.82E-02 |
| 92 | GO:0010029: regulation of seed germination | 3.32E-02 |
| 93 | GO:0016049: cell growth | 3.72E-02 |
| 94 | GO:0006811: ion transport | 4.14E-02 |
| 95 | GO:0048527: lateral root development | 4.28E-02 |
| 96 | GO:0015031: protein transport | 4.51E-02 |
| 97 | GO:0045087: innate immune response | 4.56E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 3 | GO:0003735: structural constituent of ribosome | 1.64E-89 |
| 4 | GO:0003729: mRNA binding | 1.25E-11 |
| 5 | GO:0019843: rRNA binding | 2.65E-11 |
| 6 | GO:0003723: RNA binding | 3.73E-07 |
| 7 | GO:0030515: snoRNA binding | 3.23E-06 |
| 8 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 5.71E-05 |
| 9 | GO:0004407: histone deacetylase activity | 7.28E-05 |
| 10 | GO:0000166: nucleotide binding | 1.68E-04 |
| 11 | GO:0048037: cofactor binding | 2.48E-04 |
| 12 | GO:0008746: NAD(P)+ transhydrogenase activity | 2.48E-04 |
| 13 | GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H | 2.48E-04 |
| 14 | GO:1990259: histone-glutamine methyltransferase activity | 2.48E-04 |
| 15 | GO:0042134: rRNA primary transcript binding | 2.48E-04 |
| 16 | GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase | 2.48E-04 |
| 17 | GO:0004001: adenosine kinase activity | 2.48E-04 |
| 18 | GO:0001055: RNA polymerase II activity | 4.05E-04 |
| 19 | GO:0001054: RNA polymerase I activity | 5.47E-04 |
| 20 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 5.49E-04 |
| 21 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 5.49E-04 |
| 22 | GO:0043021: ribonucleoprotein complex binding | 5.49E-04 |
| 23 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 5.49E-04 |
| 24 | GO:0005078: MAP-kinase scaffold activity | 5.49E-04 |
| 25 | GO:0001056: RNA polymerase III activity | 6.25E-04 |
| 26 | GO:0003746: translation elongation factor activity | 8.35E-04 |
| 27 | GO:0008649: rRNA methyltransferase activity | 8.92E-04 |
| 28 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 8.92E-04 |
| 29 | GO:0051087: chaperone binding | 1.20E-03 |
| 30 | GO:0003743: translation initiation factor activity | 1.21E-03 |
| 31 | GO:0043023: ribosomal large subunit binding | 1.27E-03 |
| 32 | GO:0008097: 5S rRNA binding | 1.27E-03 |
| 33 | GO:0016615: malate dehydrogenase activity | 2.67E-03 |
| 34 | GO:0030060: L-malate dehydrogenase activity | 3.21E-03 |
| 35 | GO:0008235: metalloexopeptidase activity | 3.79E-03 |
| 36 | GO:0043022: ribosome binding | 4.39E-03 |
| 37 | GO:0015288: porin activity | 4.39E-03 |
| 38 | GO:0008135: translation factor activity, RNA binding | 5.03E-03 |
| 39 | GO:0008308: voltage-gated anion channel activity | 5.03E-03 |
| 40 | GO:0005507: copper ion binding | 5.43E-03 |
| 41 | GO:0044183: protein binding involved in protein folding | 7.88E-03 |
| 42 | GO:0000049: tRNA binding | 8.66E-03 |
| 43 | GO:0009982: pseudouridine synthase activity | 9.47E-03 |
| 44 | GO:0015266: protein channel activity | 9.47E-03 |
| 45 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.10E-02 |
| 46 | GO:0051082: unfolded protein binding | 1.57E-02 |
| 47 | GO:0008026: ATP-dependent helicase activity | 1.66E-02 |
| 48 | GO:0008080: N-acetyltransferase activity | 2.12E-02 |
| 49 | GO:0050897: cobalt ion binding | 4.28E-02 |
| 50 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 4.71E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 3 | GO:0022626: cytosolic ribosome | 1.22E-53 |
| 4 | GO:0005840: ribosome | 4.49E-53 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 6.60E-52 |
| 6 | GO:0005730: nucleolus | 6.79E-47 |
| 7 | GO:0022627: cytosolic small ribosomal subunit | 1.19E-39 |
| 8 | GO:0005829: cytosol | 8.89E-17 |
| 9 | GO:0009506: plasmodesma | 1.63E-16 |
| 10 | GO:0015934: large ribosomal subunit | 4.04E-14 |
| 11 | GO:0005737: cytoplasm | 1.86E-13 |
| 12 | GO:0032040: small-subunit processome | 6.59E-09 |
| 13 | GO:0005773: vacuole | 1.43E-07 |
| 14 | GO:0005774: vacuolar membrane | 2.09E-06 |
| 15 | GO:0015935: small ribosomal subunit | 3.40E-06 |
| 16 | GO:0016020: membrane | 4.49E-06 |
| 17 | GO:0005742: mitochondrial outer membrane translocase complex | 7.15E-06 |
| 18 | GO:0005618: cell wall | 2.17E-05 |
| 19 | GO:0005834: heterotrimeric G-protein complex | 3.65E-05 |
| 20 | GO:0005741: mitochondrial outer membrane | 9.83E-05 |
| 21 | GO:0031428: box C/D snoRNP complex | 9.94E-05 |
| 22 | GO:0030687: preribosome, large subunit precursor | 1.80E-04 |
| 23 | GO:0030686: 90S preribosome | 2.48E-04 |
| 24 | GO:0005736: DNA-directed RNA polymerase I complex | 3.41E-04 |
| 25 | GO:0005666: DNA-directed RNA polymerase III complex | 4.05E-04 |
| 26 | GO:0015030: Cajal body | 4.05E-04 |
| 27 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.74E-04 |
| 28 | GO:0070545: PeBoW complex | 5.49E-04 |
| 29 | GO:0005665: DNA-directed RNA polymerase II, core complex | 6.25E-04 |
| 30 | GO:0019013: viral nucleocapsid | 7.09E-04 |
| 31 | GO:0005743: mitochondrial inner membrane | 9.42E-04 |
| 32 | GO:0009507: chloroplast | 9.63E-04 |
| 33 | GO:0005758: mitochondrial intermembrane space | 1.09E-03 |
| 34 | GO:0031429: box H/ACA snoRNP complex | 1.27E-03 |
| 35 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.70E-03 |
| 36 | GO:0005747: mitochondrial respiratory chain complex I | 2.14E-03 |
| 37 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.14E-03 |
| 38 | GO:0000974: Prp19 complex | 2.67E-03 |
| 39 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.90E-03 |
| 40 | GO:0016272: prefoldin complex | 3.21E-03 |
| 41 | GO:0016363: nuclear matrix | 3.21E-03 |
| 42 | GO:0030529: intracellular ribonucleoprotein complex | 3.81E-03 |
| 43 | GO:0005688: U6 snRNP | 4.39E-03 |
| 44 | GO:0005759: mitochondrial matrix | 4.62E-03 |
| 45 | GO:0046930: pore complex | 5.03E-03 |
| 46 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 5.03E-03 |
| 47 | GO:0071011: precatalytic spliceosome | 6.40E-03 |
| 48 | GO:0071013: catalytic step 2 spliceosome | 7.88E-03 |
| 49 | GO:0005852: eukaryotic translation initiation factor 3 complex | 7.88E-03 |
| 50 | GO:0005622: intracellular | 7.99E-03 |
| 51 | GO:0000419: DNA-directed RNA polymerase V complex | 1.21E-02 |
| 52 | GO:0005681: spliceosomal complex | 1.30E-02 |
| 53 | GO:0009532: plastid stroma | 1.49E-02 |
| 54 | GO:0005654: nucleoplasm | 1.91E-02 |
| 55 | GO:0016592: mediator complex | 2.58E-02 |
| 56 | GO:0010319: stromule | 2.94E-02 |