co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
2	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
3	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
4	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
5	GO:0007160: cell-matrix adhesion	0.00E+00
6	GO:0030149: sphingolipid catabolic process	0.00E+00
7	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
8	GO:0006097: glyoxylate cycle	3.64E-06
9	GO:0006099: tricarboxylic acid cycle	3.25E-05
10	GO:0046686: response to cadmium ion	4.29E-05
11	GO:0019605: butyrate metabolic process	4.31E-05
12	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	4.31E-05
13	GO:0006106: fumarate metabolic process	4.31E-05
14	GO:0006083: acetate metabolic process	4.31E-05
15	GO:1990542: mitochondrial transmembrane transport	4.31E-05
16	GO:0010365: positive regulation of ethylene biosynthetic process	4.31E-05
17	GO:0006336: DNA replication-independent nucleosome assembly	4.31E-05
18	GO:1901349: glucosinolate transport	4.31E-05
19	GO:0090449: phloem glucosinolate loading	4.31E-05
20	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	1.07E-04
21	GO:1990069: stomatal opening	1.07E-04
22	GO:0006101: citrate metabolic process	1.07E-04
23	GO:0019752: carboxylic acid metabolic process	1.07E-04
24	GO:0006979: response to oxidative stress	1.35E-04
25	GO:0010183: pollen tube guidance	2.46E-04
26	GO:0001676: long-chain fatty acid metabolic process	2.70E-04
27	GO:0009413: response to flooding	2.70E-04
28	GO:0031935: regulation of chromatin silencing	3.64E-04
29	GO:0006564: L-serine biosynthetic process	4.63E-04
30	GO:1902183: regulation of shoot apical meristem development	4.63E-04
31	GO:0009228: thiamine biosynthetic process	5.67E-04
32	GO:0006694: steroid biosynthetic process	6.76E-04
33	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	6.76E-04
34	GO:0045814: negative regulation of gene expression, epigenetic	6.76E-04
35	GO:0009610: response to symbiotic fungus	7.90E-04
36	GO:0050829: defense response to Gram-negative bacterium	7.90E-04
37	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	7.90E-04
38	GO:0006102: isocitrate metabolic process	9.08E-04
39	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	9.08E-04
40	GO:0009642: response to light intensity	9.08E-04
41	GO:0010208: pollen wall assembly	1.03E-03
42	GO:0006754: ATP biosynthetic process	1.16E-03
43	GO:0009060: aerobic respiration	1.16E-03
44	GO:0015780: nucleotide-sugar transport	1.16E-03
45	GO:0009651: response to salt stress	1.23E-03
46	GO:0006096: glycolytic process	1.24E-03
47	GO:0006032: chitin catabolic process	1.43E-03
48	GO:0000272: polysaccharide catabolic process	1.57E-03
49	GO:0016485: protein processing	1.57E-03
50	GO:0010072: primary shoot apical meristem specification	1.57E-03
51	GO:0072593: reactive oxygen species metabolic process	1.57E-03
52	GO:0006820: anion transport	1.72E-03
53	GO:0009735: response to cytokinin	1.76E-03
54	GO:0006108: malate metabolic process	1.87E-03
55	GO:0002237: response to molecule of bacterial origin	2.03E-03
56	GO:0042744: hydrogen peroxide catabolic process	2.09E-03
57	GO:0090351: seedling development	2.19E-03
58	GO:0055114: oxidation-reduction process	2.51E-03
59	GO:0010073: meristem maintenance	2.70E-03
60	GO:0015992: proton transport	2.88E-03
61	GO:0048511: rhythmic process	2.88E-03
62	GO:0006334: nucleosome assembly	2.88E-03
63	GO:0009617: response to bacterium	3.00E-03
64	GO:0080092: regulation of pollen tube growth	3.06E-03
65	GO:0030245: cellulose catabolic process	3.06E-03
66	GO:0010584: pollen exine formation	3.43E-03
67	GO:0010051: xylem and phloem pattern formation	3.82E-03
68	GO:0015991: ATP hydrolysis coupled proton transport	3.82E-03
69	GO:0042631: cellular response to water deprivation	3.82E-03
70	GO:0010197: polar nucleus fusion	4.02E-03
71	GO:0048868: pollen tube development	4.02E-03
72	GO:0006520: cellular amino acid metabolic process	4.02E-03
73	GO:0009860: pollen tube growth	4.18E-03
74	GO:0009749: response to glucose	4.43E-03
75	GO:0010193: response to ozone	4.64E-03
76	GO:0080167: response to karrikin	4.80E-03
77	GO:0045454: cell redox homeostasis	5.75E-03
78	GO:0016126: sterol biosynthetic process	5.98E-03
79	GO:0006869: lipid transport	6.30E-03
80	GO:0030244: cellulose biosynthetic process	7.19E-03
81	GO:0006811: ion transport	7.69E-03
82	GO:0009631: cold acclimation	7.95E-03
83	GO:0010119: regulation of stomatal movement	7.95E-03
84	GO:0009853: photorespiration	8.47E-03
85	GO:0009867: jasmonic acid mediated signaling pathway	8.47E-03
86	GO:0006631: fatty acid metabolic process	9.56E-03
87	GO:0051707: response to other organism	1.01E-02
88	GO:0008643: carbohydrate transport	1.07E-02
89	GO:0009846: pollen germination	1.19E-02
90	GO:0009737: response to abscisic acid	1.25E-02
91	GO:0006857: oligopeptide transport	1.31E-02
92	GO:0009626: plant-type hypersensitive response	1.47E-02
93	GO:0009620: response to fungus	1.50E-02
94	GO:0016569: covalent chromatin modification	1.54E-02
95	GO:0042545: cell wall modification	1.57E-02
96	GO:0006508: proteolysis	1.99E-02
97	GO:0006413: translational initiation	2.25E-02
98	GO:0040008: regulation of growth	2.29E-02
99	GO:0045490: pectin catabolic process	2.36E-02
100	GO:0009414: response to water deprivation	2.50E-02
101	GO:0042742: defense response to bacterium	2.56E-02
102	GO:0009826: unidimensional cell growth	3.14E-02
103	GO:0009409: response to cold	3.46E-02
104	GO:0006810: transport	3.75E-02
105	GO:0015979: photosynthesis	4.13E-02
106	GO:0045892: negative regulation of transcription, DNA-templated	4.32E-02
107	GO:0009408: response to heat	4.95E-02
108	GO:0007275: multicellular organism development	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0003796: lysozyme activity	0.00E+00
2	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
3	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
4	GO:0033919: glucan 1,3-alpha-glucosidase activity	0.00E+00
5	GO:0015926: glucosidase activity	0.00E+00
6	GO:0004222: metalloendopeptidase activity	2.42E-05
7	GO:0090448: glucosinolate:proton symporter activity	4.31E-05
8	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	4.31E-05
9	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	4.31E-05
10	GO:0004333: fumarate hydratase activity	4.31E-05
11	GO:0003987: acetate-CoA ligase activity	4.31E-05
12	GO:0000824: inositol tetrakisphosphate 3-kinase activity	4.31E-05
13	GO:0047326: inositol tetrakisphosphate 5-kinase activity	4.31E-05
14	GO:0047760: butyrate-CoA ligase activity	4.31E-05
15	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	4.31E-05
16	GO:0004618: phosphoglycerate kinase activity	1.07E-04
17	GO:0004617: phosphoglycerate dehydrogenase activity	1.07E-04
18	GO:0003994: aconitate hydratase activity	1.07E-04
19	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	1.07E-04
20	GO:0019172: glyoxalase III activity	1.07E-04
21	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	1.84E-04
22	GO:0004148: dihydrolipoyl dehydrogenase activity	1.84E-04
23	GO:0016887: ATPase activity	2.34E-04
24	GO:0017077: oxidative phosphorylation uncoupler activity	2.70E-04
25	GO:0004576: oligosaccharyl transferase activity	3.64E-04
26	GO:0016208: AMP binding	5.67E-04
27	GO:0004656: procollagen-proline 4-dioxygenase activity	6.76E-04
28	GO:0102391: decanoate--CoA ligase activity	6.76E-04
29	GO:0031491: nucleosome binding	6.76E-04
30	GO:0004467: long-chain fatty acid-CoA ligase activity	7.90E-04
31	GO:0016831: carboxy-lyase activity	7.90E-04
32	GO:0005338: nucleotide-sugar transmembrane transporter activity	7.90E-04
33	GO:0015288: porin activity	9.08E-04
34	GO:0008135: translation factor activity, RNA binding	1.03E-03
35	GO:0008308: voltage-gated anion channel activity	1.03E-03
36	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.16E-03
37	GO:0030955: potassium ion binding	1.29E-03
38	GO:0004743: pyruvate kinase activity	1.29E-03
39	GO:0004568: chitinase activity	1.43E-03
40	GO:0031418: L-ascorbic acid binding	2.52E-03
41	GO:0003714: transcription corepressor activity	2.52E-03
42	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.79E-03
43	GO:0004176: ATP-dependent peptidase activity	2.88E-03
44	GO:0005507: copper ion binding	3.07E-03
45	GO:0008810: cellulase activity	3.24E-03
46	GO:0047134: protein-disulfide reductase activity	3.63E-03
47	GO:0000287: magnesium ion binding	3.81E-03
48	GO:0004601: peroxidase activity	3.88E-03
49	GO:0004791: thioredoxin-disulfide reductase activity	4.23E-03
50	GO:0005524: ATP binding	4.23E-03
51	GO:0008237: metallopeptidase activity	5.52E-03
52	GO:0016597: amino acid binding	5.75E-03
53	GO:0042803: protein homodimerization activity	6.02E-03
54	GO:0050897: cobalt ion binding	7.95E-03
55	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	8.47E-03
56	GO:0003746: translation elongation factor activity	8.47E-03
57	GO:0008422: beta-glucosidase activity	9.01E-03
58	GO:0051539: 4 iron, 4 sulfur cluster binding	9.28E-03
59	GO:0008289: lipid binding	9.85E-03
60	GO:0051287: NAD binding	1.16E-02
61	GO:0000166: nucleotide binding	1.26E-02
62	GO:0045330: aspartyl esterase activity	1.34E-02
63	GO:0030599: pectinesterase activity	1.54E-02
64	GO:0016746: transferase activity, transferring acyl groups	1.64E-02
65	GO:0030170: pyridoxal phosphate binding	2.02E-02
66	GO:0005525: GTP binding	2.08E-02
67	GO:0046910: pectinesterase inhibitor activity	2.25E-02
68	GO:0005351: sugar:proton symporter activity	2.32E-02
69	GO:0003743: translation initiation factor activity	2.64E-02
70	GO:0005215: transporter activity	2.83E-02
71	GO:0046982: protein heterodimerization activity	3.18E-02
72	GO:0016491: oxidoreductase activity	3.36E-02
73	GO:0043531: ADP binding	3.44E-02
74	GO:0050660: flavin adenine dinucleotide binding	3.58E-02
75	GO:0003729: mRNA binding	3.80E-02
76	GO:0008270: zinc ion binding	4.01E-02
77	GO:0020037: heme binding	4.02E-02
78	GO:0005515: protein binding	4.81E-02
79	GO:0003924: GTPase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0008305: integrin complex	0.00E+00
2	GO:0005774: vacuolar membrane	3.13E-08
3	GO:0016020: membrane	3.04E-05
4	GO:0045239: tricarboxylic acid cycle enzyme complex	4.31E-05
5	GO:0045252: oxoglutarate dehydrogenase complex	4.31E-05
6	GO:0005783: endoplasmic reticulum	5.37E-05
7	GO:0005750: mitochondrial respiratory chain complex III	6.90E-05
8	GO:0009506: plasmodesma	7.28E-05
9	GO:0005741: mitochondrial outer membrane	1.24E-04
10	GO:0046861: glyoxysomal membrane	1.84E-04
11	GO:0005618: cell wall	3.75E-04
12	GO:0005851: eukaryotic translation initiation factor 2B complex	5.67E-04
13	GO:0005829: cytosol	5.73E-04
14	GO:0005743: mitochondrial inner membrane	8.83E-04
15	GO:0046930: pore complex	1.03E-03
16	GO:0009514: glyoxysome	1.03E-03
17	GO:0005759: mitochondrial matrix	2.30E-03
18	GO:0005758: mitochondrial intermembrane space	2.52E-03
19	GO:0000790: nuclear chromatin	3.63E-03
20	GO:0071944: cell periphery	5.07E-03
21	GO:0009707: chloroplast outer membrane	7.19E-03
22	GO:0005789: endoplasmic reticulum membrane	8.21E-03
23	GO:0090406: pollen tube	1.01E-02
24	GO:0005739: mitochondrion	1.10E-02
25	GO:0005886: plasma membrane	1.14E-02
26	GO:0000502: proteasome complex	1.25E-02
27	GO:0005747: mitochondrial respiratory chain complex I	1.44E-02
28	GO:0005777: peroxisome	1.45E-02
29	GO:0005576: extracellular region	1.94E-02
30	GO:0009507: chloroplast	2.12E-02
31	GO:0048046: apoplast	2.46E-02
32	GO:0005615: extracellular space	2.56E-02
33	GO:0009536: plastid	3.13E-02
34	GO:0005773: vacuole	3.93E-02
35	GO:0005730: nucleolus	4.31E-02