co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:0015882: L-ascorbic acid transport	0.00E+00
8	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
9	GO:0008298: intracellular mRNA localization	0.00E+00
10	GO:0051246: regulation of protein metabolic process	0.00E+00
11	GO:0042493: response to drug	0.00E+00
12	GO:0006399: tRNA metabolic process	0.00E+00
13	GO:0016123: xanthophyll biosynthetic process	1.75E-06
14	GO:0009793: embryo development ending in seed dormancy	7.10E-06
15	GO:0015979: photosynthesis	1.34E-05
16	GO:0048564: photosystem I assembly	1.38E-05
17	GO:0009657: plastid organization	1.98E-05
18	GO:0090391: granum assembly	2.21E-05
19	GO:0009658: chloroplast organization	3.51E-05
20	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.86E-05
21	GO:0009902: chloroplast relocation	8.61E-05
22	GO:0009451: RNA modification	8.67E-05
23	GO:0009767: photosynthetic electron transport chain	9.04E-05
24	GO:0016120: carotene biosynthetic process	1.34E-04
25	GO:0006419: alanyl-tRNA aminoacylation	3.75E-04
26	GO:0010362: negative regulation of anion channel activity by blue light	3.75E-04
27	GO:0009443: pyridoxal 5'-phosphate salvage	3.75E-04
28	GO:0031426: polycistronic mRNA processing	3.75E-04
29	GO:1904966: positive regulation of vitamin E biosynthetic process	3.75E-04
30	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.75E-04
31	GO:0010480: microsporocyte differentiation	3.75E-04
32	GO:0071277: cellular response to calcium ion	3.75E-04
33	GO:1904964: positive regulation of phytol biosynthetic process	3.75E-04
34	GO:0042371: vitamin K biosynthetic process	3.75E-04
35	GO:0006436: tryptophanyl-tRNA aminoacylation	3.75E-04
36	GO:0010028: xanthophyll cycle	3.75E-04
37	GO:0071482: cellular response to light stimulus	5.17E-04
38	GO:0000373: Group II intron splicing	6.19E-04
39	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.15E-04
40	GO:0080005: photosystem stoichiometry adjustment	8.15E-04
41	GO:1902326: positive regulation of chlorophyll biosynthetic process	8.15E-04
42	GO:0000256: allantoin catabolic process	8.15E-04
43	GO:0034755: iron ion transmembrane transport	8.15E-04
44	GO:0006435: threonyl-tRNA aminoacylation	8.15E-04
45	GO:0009773: photosynthetic electron transport in photosystem I	9.79E-04
46	GO:0006352: DNA-templated transcription, initiation	9.79E-04
47	GO:0015995: chlorophyll biosynthetic process	1.16E-03
48	GO:0006006: glucose metabolic process	1.27E-03
49	GO:0010136: ureide catabolic process	1.32E-03
50	GO:0006013: mannose metabolic process	1.32E-03
51	GO:0002230: positive regulation of defense response to virus by host	1.32E-03
52	GO:1901672: positive regulation of systemic acquired resistance	1.32E-03
53	GO:0018298: protein-chromophore linkage	1.32E-03
54	GO:0001578: microtubule bundle formation	1.32E-03
55	GO:0005977: glycogen metabolic process	1.32E-03
56	GO:0010020: chloroplast fission	1.43E-03
57	GO:0080167: response to karrikin	1.57E-03
58	GO:0009102: biotin biosynthetic process	1.91E-03
59	GO:0010239: chloroplast mRNA processing	1.91E-03
60	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.91E-03
61	GO:0009650: UV protection	1.91E-03
62	GO:0090307: mitotic spindle assembly	1.91E-03
63	GO:0006809: nitric oxide biosynthetic process	1.91E-03
64	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.91E-03
65	GO:0006145: purine nucleobase catabolic process	1.91E-03
66	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.91E-03
67	GO:2001141: regulation of RNA biosynthetic process	1.91E-03
68	GO:0007017: microtubule-based process	2.18E-03
69	GO:0051322: anaphase	2.56E-03
70	GO:0031935: regulation of chromatin silencing	2.56E-03
71	GO:0009765: photosynthesis, light harvesting	2.56E-03
72	GO:0015846: polyamine transport	2.56E-03
73	GO:0031122: cytoplasmic microtubule organization	2.56E-03
74	GO:0006221: pyrimidine nucleotide biosynthetic process	2.56E-03
75	GO:0007020: microtubule nucleation	2.56E-03
76	GO:0006021: inositol biosynthetic process	2.56E-03
77	GO:0071483: cellular response to blue light	2.56E-03
78	GO:0010021: amylopectin biosynthetic process	2.56E-03
79	GO:0034052: positive regulation of plant-type hypersensitive response	3.28E-03
80	GO:0046785: microtubule polymerization	3.28E-03
81	GO:0016558: protein import into peroxisome matrix	3.28E-03
82	GO:0006564: L-serine biosynthetic process	3.28E-03
83	GO:0006282: regulation of DNA repair	3.28E-03
84	GO:0006364: rRNA processing	3.60E-03
85	GO:0008033: tRNA processing	3.64E-03
86	GO:0006655: phosphatidylglycerol biosynthetic process	4.05E-03
87	GO:0010190: cytochrome b6f complex assembly	4.05E-03
88	GO:0032973: amino acid export	4.05E-03
89	GO:0000741: karyogamy	4.05E-03
90	GO:0009643: photosynthetic acclimation	4.05E-03
91	GO:0046855: inositol phosphate dephosphorylation	4.05E-03
92	GO:0042549: photosystem II stabilization	4.05E-03
93	GO:0009791: post-embryonic development	4.53E-03
94	GO:0010193: response to ozone	4.84E-03
95	GO:0017148: negative regulation of translation	4.88E-03
96	GO:1901259: chloroplast rRNA processing	4.88E-03
97	GO:0010189: vitamin E biosynthetic process	4.88E-03
98	GO:0055114: oxidation-reduction process	5.46E-03
99	GO:0048528: post-embryonic root development	5.77E-03
100	GO:0009772: photosynthetic electron transport in photosystem II	5.77E-03
101	GO:0043090: amino acid import	5.77E-03
102	GO:1900056: negative regulation of leaf senescence	5.77E-03
103	GO:0048437: floral organ development	5.77E-03
104	GO:0010196: nonphotochemical quenching	5.77E-03
105	GO:0006400: tRNA modification	5.77E-03
106	GO:0006401: RNA catabolic process	5.77E-03
107	GO:0006402: mRNA catabolic process	6.70E-03
108	GO:0009642: response to light intensity	6.70E-03
109	GO:0042255: ribosome assembly	6.70E-03
110	GO:0009704: de-etiolation	6.70E-03
111	GO:0006353: DNA-templated transcription, termination	6.70E-03
112	GO:0016559: peroxisome fission	6.70E-03
113	GO:0010027: thylakoid membrane organization	7.02E-03
114	GO:0009816: defense response to bacterium, incompatible interaction	7.42E-03
115	GO:0032544: plastid translation	7.69E-03
116	GO:0017004: cytochrome complex assembly	7.69E-03
117	GO:0098656: anion transmembrane transport	8.73E-03
118	GO:0009051: pentose-phosphate shunt, oxidative branch	8.73E-03
119	GO:0009821: alkaloid biosynthetic process	8.73E-03
120	GO:0006098: pentose-phosphate shunt	8.73E-03
121	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.73E-03
122	GO:0080144: amino acid homeostasis	8.73E-03
123	GO:0090333: regulation of stomatal closure	8.73E-03
124	GO:0048507: meristem development	8.73E-03
125	GO:0009638: phototropism	9.82E-03
126	GO:0010380: regulation of chlorophyll biosynthetic process	9.82E-03
127	GO:0031425: chloroplast RNA processing	9.82E-03
128	GO:1900426: positive regulation of defense response to bacterium	9.82E-03
129	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.10E-02
130	GO:0045036: protein targeting to chloroplast	1.10E-02
131	GO:0006949: syncytium formation	1.10E-02
132	GO:0006259: DNA metabolic process	1.10E-02
133	GO:0007623: circadian rhythm	1.14E-02
134	GO:0009637: response to blue light	1.17E-02
135	GO:0006265: DNA topological change	1.21E-02
136	GO:1903507: negative regulation of nucleic acid-templated transcription	1.21E-02
137	GO:0006879: cellular iron ion homeostasis	1.21E-02
138	GO:0006415: translational termination	1.21E-02
139	GO:0048229: gametophyte development	1.21E-02
140	GO:0006790: sulfur compound metabolic process	1.34E-02
141	GO:0016024: CDP-diacylglycerol biosynthetic process	1.34E-02
142	GO:0010628: positive regulation of gene expression	1.46E-02
143	GO:0010075: regulation of meristem growth	1.46E-02
144	GO:0009725: response to hormone	1.46E-02
145	GO:0006094: gluconeogenesis	1.46E-02
146	GO:0010114: response to red light	1.51E-02
147	GO:0010207: photosystem II assembly	1.59E-02
148	GO:0019253: reductive pentose-phosphate cycle	1.59E-02
149	GO:0009934: regulation of meristem structural organization	1.59E-02
150	GO:0019853: L-ascorbic acid biosynthetic process	1.73E-02
151	GO:0090351: seedling development	1.73E-02
152	GO:0046854: phosphatidylinositol phosphorylation	1.73E-02
153	GO:0006863: purine nucleobase transport	1.87E-02
154	GO:0006833: water transport	1.87E-02
155	GO:0080147: root hair cell development	2.01E-02
156	GO:0006810: transport	2.09E-02
157	GO:0006418: tRNA aminoacylation for protein translation	2.15E-02
158	GO:0043622: cortical microtubule organization	2.15E-02
159	GO:0006825: copper ion transport	2.15E-02
160	GO:0048511: rhythmic process	2.30E-02
161	GO:0006096: glycolytic process	2.41E-02
162	GO:0016226: iron-sulfur cluster assembly	2.46E-02
163	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.46E-02
164	GO:0080092: regulation of pollen tube growth	2.46E-02
165	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.62E-02
166	GO:0009411: response to UV	2.62E-02
167	GO:0016117: carotenoid biosynthetic process	2.94E-02
168	GO:0006396: RNA processing	2.98E-02
169	GO:0048653: anther development	3.11E-02
170	GO:0034220: ion transmembrane transport	3.11E-02
171	GO:0000413: protein peptidyl-prolyl isomerization	3.11E-02
172	GO:0010118: stomatal movement	3.11E-02
173	GO:0010197: polar nucleus fusion	3.28E-02
174	GO:0048868: pollen tube development	3.28E-02
175	GO:0015986: ATP synthesis coupled proton transport	3.45E-02
176	GO:0007018: microtubule-based movement	3.45E-02
177	GO:0042752: regulation of circadian rhythm	3.45E-02
178	GO:0007059: chromosome segregation	3.45E-02
179	GO:0019252: starch biosynthetic process	3.63E-02
180	GO:0008654: phospholipid biosynthetic process	3.63E-02
181	GO:0006635: fatty acid beta-oxidation	3.81E-02
182	GO:0055085: transmembrane transport	3.95E-02
183	GO:0032259: methylation	3.98E-02
184	GO:0031047: gene silencing by RNA	3.99E-02
185	GO:0016032: viral process	3.99E-02
186	GO:0032502: developmental process	3.99E-02
187	GO:0009828: plant-type cell wall loosening	4.36E-02
188	GO:0006413: translational initiation	4.65E-02
189	GO:0051607: defense response to virus	4.75E-02
190	GO:0000910: cytokinesis	4.75E-02
191	GO:0001666: response to hypoxia	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
4	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
5	GO:0019808: polyamine binding	0.00E+00
6	GO:0010276: phytol kinase activity	0.00E+00
7	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
8	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
9	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
10	GO:0042623: ATPase activity, coupled	0.00E+00
11	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
12	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
13	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.61E-05
15	GO:0016987: sigma factor activity	8.61E-05
16	GO:0001053: plastid sigma factor activity	8.61E-05
17	GO:0004519: endonuclease activity	2.29E-04
18	GO:0004451: isocitrate lyase activity	3.75E-04
19	GO:0004813: alanine-tRNA ligase activity	3.75E-04
20	GO:0004008: copper-exporting ATPase activity	3.75E-04
21	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.75E-04
22	GO:0004830: tryptophan-tRNA ligase activity	3.75E-04
23	GO:0030941: chloroplast targeting sequence binding	3.75E-04
24	GO:0004654: polyribonucleotide nucleotidyltransferase activity	3.75E-04
25	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.75E-04
26	GO:0048038: quinone binding	5.95E-04
27	GO:0052832: inositol monophosphate 3-phosphatase activity	8.15E-04
28	GO:0008934: inositol monophosphate 1-phosphatase activity	8.15E-04
29	GO:0004829: threonine-tRNA ligase activity	8.15E-04
30	GO:0052833: inositol monophosphate 4-phosphatase activity	8.15E-04
31	GO:0019156: isoamylase activity	8.15E-04
32	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	8.15E-04
33	GO:0004617: phosphoglycerate dehydrogenase activity	8.15E-04
34	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.79E-04
35	GO:0032947: protein complex scaffold	1.32E-03
36	GO:0004148: dihydrolipoyl dehydrogenase activity	1.32E-03
37	GO:0004751: ribose-5-phosphate isomerase activity	1.32E-03
38	GO:0070402: NADPH binding	1.32E-03
39	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.32E-03
40	GO:0048027: mRNA 5'-UTR binding	1.91E-03
41	GO:0009041: uridylate kinase activity	1.91E-03
42	GO:0016149: translation release factor activity, codon specific	1.91E-03
43	GO:0016851: magnesium chelatase activity	1.91E-03
44	GO:0009882: blue light photoreceptor activity	1.91E-03
45	GO:0043023: ribosomal large subunit binding	1.91E-03
46	GO:0016491: oxidoreductase activity	2.09E-03
47	GO:0008453: alanine-glyoxylate transaminase activity	2.56E-03
48	GO:0043015: gamma-tubulin binding	2.56E-03
49	GO:0043495: protein anchor	2.56E-03
50	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	2.56E-03
51	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.56E-03
52	GO:0051861: glycolipid binding	2.56E-03
53	GO:0008017: microtubule binding	2.60E-03
54	GO:0051537: 2 iron, 2 sulfur cluster binding	2.72E-03
55	GO:0003723: RNA binding	2.86E-03
56	GO:0022891: substrate-specific transmembrane transporter activity	2.86E-03
57	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.00E-03
58	GO:0003727: single-stranded RNA binding	3.11E-03
59	GO:0051011: microtubule minus-end binding	3.28E-03
60	GO:0042802: identical protein binding	3.50E-03
61	GO:0004332: fructose-bisphosphate aldolase activity	4.05E-03
62	GO:0004556: alpha-amylase activity	4.05E-03
63	GO:0000293: ferric-chelate reductase activity	4.05E-03
64	GO:0042578: phosphoric ester hydrolase activity	4.05E-03
65	GO:0004605: phosphatidate cytidylyltransferase activity	4.05E-03
66	GO:0003777: microtubule motor activity	4.11E-03
67	GO:0010181: FMN binding	4.22E-03
68	GO:0008195: phosphatidate phosphatase activity	4.88E-03
69	GO:0015631: tubulin binding	4.88E-03
70	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.88E-03
71	GO:0004559: alpha-mannosidase activity	4.88E-03
72	GO:0019899: enzyme binding	5.77E-03
73	GO:0016597: amino acid binding	6.62E-03
74	GO:0043022: ribosome binding	6.70E-03
75	GO:0004033: aldo-keto reductase (NADP) activity	6.70E-03
76	GO:0016168: chlorophyll binding	7.42E-03
77	GO:0019843: rRNA binding	7.53E-03
78	GO:0005375: copper ion transmembrane transporter activity	7.69E-03
79	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	7.69E-03
80	GO:0003747: translation release factor activity	8.73E-03
81	GO:0005381: iron ion transmembrane transporter activity	9.82E-03
82	GO:0016844: strictosidine synthase activity	9.82E-03
83	GO:0003924: GTPase activity	1.18E-02
84	GO:0003993: acid phosphatase activity	1.22E-02
85	GO:0050661: NADP binding	1.33E-02
86	GO:0000049: tRNA binding	1.34E-02
87	GO:0000175: 3'-5'-exoribonuclease activity	1.46E-02
88	GO:0008081: phosphoric diester hydrolase activity	1.46E-02
89	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.46E-02
90	GO:0005315: inorganic phosphate transmembrane transporter activity	1.46E-02
91	GO:0000155: phosphorelay sensor kinase activity	1.46E-02
92	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.59E-02
93	GO:0043621: protein self-association	1.63E-02
94	GO:0005198: structural molecule activity	1.69E-02
95	GO:0051287: NAD binding	1.83E-02
96	GO:0005528: FK506 binding	2.01E-02
97	GO:0003714: transcription corepressor activity	2.01E-02
98	GO:0051536: iron-sulfur cluster binding	2.01E-02
99	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.03E-02
100	GO:0043424: protein histidine kinase binding	2.15E-02
101	GO:0005345: purine nucleobase transmembrane transporter activity	2.15E-02
102	GO:0031625: ubiquitin protein ligase binding	2.25E-02
103	GO:0016887: ATPase activity	2.28E-02
104	GO:0004176: ATP-dependent peptidase activity	2.30E-02
105	GO:0033612: receptor serine/threonine kinase binding	2.30E-02
106	GO:0008514: organic anion transmembrane transporter activity	2.78E-02
107	GO:0004812: aminoacyl-tRNA ligase activity	2.94E-02
108	GO:0008080: N-acetyltransferase activity	3.28E-02
109	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.28E-02
110	GO:0004872: receptor activity	3.63E-02
111	GO:0004518: nuclease activity	3.99E-02
112	GO:0008483: transaminase activity	4.55E-02
113	GO:0005200: structural constituent of cytoskeleton	4.55E-02
114	GO:0015250: water channel activity	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0042597: periplasmic space	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	1.10E-48
4	GO:0009535: chloroplast thylakoid membrane	4.25E-21
5	GO:0009570: chloroplast stroma	2.13E-12
6	GO:0009534: chloroplast thylakoid	1.95E-10
7	GO:0009543: chloroplast thylakoid lumen	1.14E-08
8	GO:0009579: thylakoid	1.92E-07
9	GO:0009941: chloroplast envelope	9.02E-07
10	GO:0009654: photosystem II oxygen evolving complex	1.00E-05
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.72E-05
12	GO:0030286: dynein complex	8.61E-05
13	GO:0042651: thylakoid membrane	2.04E-04
14	GO:0031977: thylakoid lumen	3.40E-04
15	GO:0031969: chloroplast membrane	3.65E-04
16	GO:0009515: granal stacked thylakoid	3.75E-04
17	GO:0009523: photosystem II	5.46E-04
18	GO:0019898: extrinsic component of membrane	5.46E-04
19	GO:0042644: chloroplast nucleoid	6.19E-04
20	GO:0008274: gamma-tubulin ring complex	8.15E-04
21	GO:0009707: chloroplast outer membrane	1.32E-03
22	GO:0010007: magnesium chelatase complex	1.32E-03
23	GO:0030095: chloroplast photosystem II	1.43E-03
24	GO:0005874: microtubule	1.48E-03
25	GO:0000923: equatorial microtubule organizing center	1.91E-03
26	GO:0042646: plastid nucleoid	1.91E-03
27	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.56E-03
28	GO:0072686: mitotic spindle	3.28E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	4.05E-03
30	GO:0010005: cortical microtubule, transverse to long axis	4.88E-03
31	GO:0009505: plant-type cell wall	5.46E-03
32	GO:0009533: chloroplast stromal thylakoid	5.77E-03
33	GO:0031359: integral component of chloroplast outer membrane	5.77E-03
34	GO:0009295: nucleoid	6.24E-03
35	GO:0009538: photosystem I reaction center	6.70E-03
36	GO:0009539: photosystem II reaction center	7.69E-03
37	GO:0000922: spindle pole	8.73E-03
38	GO:0055028: cortical microtubule	1.10E-02
39	GO:0016324: apical plasma membrane	1.10E-02
40	GO:0005819: spindle	1.27E-02
41	GO:0043231: intracellular membrane-bounded organelle	1.37E-02
42	GO:0009508: plastid chromosome	1.46E-02
43	GO:0009574: preprophase band	1.46E-02
44	GO:0005938: cell cortex	1.46E-02
45	GO:0005875: microtubule associated complex	1.87E-02
46	GO:0009532: plastid stroma	2.30E-02
47	GO:0005871: kinesin complex	2.94E-02
48	GO:0010287: plastoglobule	3.43E-02
49	GO:0005778: peroxisomal membrane	4.55E-02
50	GO:0010319: stromule	4.55E-02