co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090279: regulation of calcium ion import	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0015717: triose phosphate transport	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:0048512: circadian behavior	0.00E+00
6	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0030155: regulation of cell adhesion	0.00E+00
9	GO:0005980: glycogen catabolic process	0.00E+00
10	GO:0009773: photosynthetic electron transport in photosystem I	1.69E-07
11	GO:0015979: photosynthesis	3.39E-07
12	GO:0009735: response to cytokinin	5.01E-07
13	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.74E-06
14	GO:0032544: plastid translation	3.73E-06
15	GO:0006000: fructose metabolic process	6.40E-06
16	GO:0010021: amylopectin biosynthetic process	2.72E-05
17	GO:0080093: regulation of photorespiration	1.91E-04
18	GO:0031998: regulation of fatty acid beta-oxidation	1.91E-04
19	GO:0000023: maltose metabolic process	1.91E-04
20	GO:0006002: fructose 6-phosphate metabolic process	1.91E-04
21	GO:0000025: maltose catabolic process	1.91E-04
22	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.91E-04
23	GO:0006412: translation	2.09E-04
24	GO:0015995: chlorophyll biosynthetic process	3.36E-04
25	GO:0005976: polysaccharide metabolic process	4.29E-04
26	GO:0031648: protein destabilization	4.29E-04
27	GO:0051262: protein tetramerization	4.29E-04
28	GO:0005983: starch catabolic process	4.34E-04
29	GO:0006094: gluconeogenesis	4.93E-04
30	GO:0005986: sucrose biosynthetic process	4.93E-04
31	GO:0080055: low-affinity nitrate transport	6.99E-04
32	GO:0035436: triose phosphate transmembrane transport	6.99E-04
33	GO:0016050: vesicle organization	6.99E-04
34	GO:0048281: inflorescence morphogenesis	6.99E-04
35	GO:0009409: response to cold	7.31E-04
36	GO:0005975: carbohydrate metabolic process	9.39E-04
37	GO:0010306: rhamnogalacturonan II biosynthetic process	9.97E-04
38	GO:0010731: protein glutathionylation	9.97E-04
39	GO:1901332: negative regulation of lateral root development	9.97E-04
40	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.97E-04
41	GO:0010148: transpiration	9.97E-04
42	GO:0042254: ribosome biogenesis	1.08E-03
43	GO:0015846: polyamine transport	1.32E-03
44	GO:0006808: regulation of nitrogen utilization	1.32E-03
45	GO:0051322: anaphase	1.32E-03
46	GO:0006109: regulation of carbohydrate metabolic process	1.32E-03
47	GO:0010600: regulation of auxin biosynthetic process	1.32E-03
48	GO:0006552: leucine catabolic process	1.32E-03
49	GO:0015713: phosphoglycerate transport	1.32E-03
50	GO:0006097: glyoxylate cycle	1.68E-03
51	GO:0006461: protein complex assembly	1.68E-03
52	GO:0016120: carotene biosynthetic process	1.68E-03
53	GO:0019252: starch biosynthetic process	1.71E-03
54	GO:0003006: developmental process involved in reproduction	2.07E-03
55	GO:0009643: photosynthetic acclimation	2.07E-03
56	GO:0000470: maturation of LSU-rRNA	2.07E-03
57	GO:1901259: chloroplast rRNA processing	2.49E-03
58	GO:0009955: adaxial/abaxial pattern specification	2.49E-03
59	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.49E-03
60	GO:0016042: lipid catabolic process	2.51E-03
61	GO:0010027: thylakoid membrane organization	2.63E-03
62	GO:0070370: cellular heat acclimation	2.93E-03
63	GO:0022904: respiratory electron transport chain	2.93E-03
64	GO:0010103: stomatal complex morphogenesis	2.93E-03
65	GO:0010161: red light signaling pathway	2.93E-03
66	GO:0030497: fatty acid elongation	2.93E-03
67	GO:0006353: DNA-templated transcription, termination	3.40E-03
68	GO:0009704: de-etiolation	3.40E-03
69	GO:0010928: regulation of auxin mediated signaling pathway	3.40E-03
70	GO:0005978: glycogen biosynthetic process	3.40E-03
71	GO:0001558: regulation of cell growth	3.88E-03
72	GO:0010099: regulation of photomorphogenesis	3.88E-03
73	GO:0009827: plant-type cell wall modification	3.88E-03
74	GO:0009657: plastid organization	3.88E-03
75	GO:0055114: oxidation-reduction process	4.08E-03
76	GO:0006783: heme biosynthetic process	4.40E-03
77	GO:0048507: meristem development	4.40E-03
78	GO:0051865: protein autoubiquitination	4.40E-03
79	GO:0034599: cellular response to oxidative stress	4.52E-03
80	GO:0005982: starch metabolic process	4.93E-03
81	GO:0010205: photoinhibition	4.93E-03
82	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.93E-03
83	GO:0042761: very long-chain fatty acid biosynthetic process	4.93E-03
84	GO:0048829: root cap development	5.48E-03
85	GO:0006782: protoporphyrinogen IX biosynthetic process	5.48E-03
86	GO:0009658: chloroplast organization	5.61E-03
87	GO:0006415: translational termination	6.06E-03
88	GO:0009073: aromatic amino acid family biosynthetic process	6.06E-03
89	GO:0043085: positive regulation of catalytic activity	6.06E-03
90	GO:0009750: response to fructose	6.06E-03
91	GO:0000038: very long-chain fatty acid metabolic process	6.06E-03
92	GO:0045037: protein import into chloroplast stroma	6.66E-03
93	GO:0010582: floral meristem determinacy	6.66E-03
94	GO:0071365: cellular response to auxin stimulus	6.66E-03
95	GO:0010628: positive regulation of gene expression	7.28E-03
96	GO:0006108: malate metabolic process	7.28E-03
97	GO:0019253: reductive pentose-phosphate cycle	7.91E-03
98	GO:0009266: response to temperature stimulus	7.91E-03
99	GO:0006302: double-strand break repair	7.91E-03
100	GO:0048467: gynoecium development	7.91E-03
101	GO:0010020: chloroplast fission	7.91E-03
102	GO:0005985: sucrose metabolic process	8.57E-03
103	GO:0010025: wax biosynthetic process	9.25E-03
104	GO:0006636: unsaturated fatty acid biosynthetic process	9.25E-03
105	GO:0045454: cell redox homeostasis	9.28E-03
106	GO:0009944: polarity specification of adaxial/abaxial axis	9.94E-03
107	GO:0051302: regulation of cell division	1.07E-02
108	GO:0019953: sexual reproduction	1.07E-02
109	GO:0007017: microtubule-based process	1.07E-02
110	GO:0051321: meiotic cell cycle	1.14E-02
111	GO:0003333: amino acid transmembrane transport	1.14E-02
112	GO:0019915: lipid storage	1.14E-02
113	GO:0061077: chaperone-mediated protein folding	1.14E-02
114	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.21E-02
115	GO:0010017: red or far-red light signaling pathway	1.21E-02
116	GO:0001944: vasculature development	1.29E-02
117	GO:0009686: gibberellin biosynthetic process	1.29E-02
118	GO:0006284: base-excision repair	1.37E-02
119	GO:0016117: carotenoid biosynthetic process	1.45E-02
120	GO:0042335: cuticle development	1.53E-02
121	GO:0006662: glycerol ether metabolic process	1.62E-02
122	GO:0048868: pollen tube development	1.62E-02
123	GO:0006633: fatty acid biosynthetic process	1.69E-02
124	GO:0009646: response to absence of light	1.70E-02
125	GO:0009414: response to water deprivation	1.76E-02
126	GO:0042742: defense response to bacterium	1.82E-02
127	GO:0006979: response to oxidative stress	1.84E-02
128	GO:0000302: response to reactive oxygen species	1.88E-02
129	GO:1901657: glycosyl compound metabolic process	2.06E-02
130	GO:0071281: cellular response to iron ion	2.06E-02
131	GO:0000910: cytokinesis	2.34E-02
132	GO:0009627: systemic acquired resistance	2.64E-02
133	GO:0016311: dephosphorylation	2.84E-02
134	GO:0009817: defense response to fungus, incompatible interaction	2.95E-02
135	GO:0006970: response to osmotic stress	3.09E-02
136	GO:0009834: plant-type secondary cell wall biogenesis	3.16E-02
137	GO:0006810: transport	3.21E-02
138	GO:0009631: cold acclimation	3.27E-02
139	GO:0046686: response to cadmium ion	3.49E-02
140	GO:0080167: response to karrikin	3.56E-02
141	GO:0006099: tricarboxylic acid cycle	3.60E-02
142	GO:0009965: leaf morphogenesis	4.54E-02
143	GO:0006855: drug transmembrane transport	4.66E-02
144	GO:0006869: lipid transport	4.66E-02
145	GO:0009664: plant-type cell wall organization	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0004645: phosphorylase activity	0.00E+00
2	GO:0048039: ubiquinone binding	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0008184: glycogen phosphorylase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0016166: phytoene dehydrogenase activity	0.00E+00
9	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
10	GO:0019843: rRNA binding	1.02E-07
11	GO:0004565: beta-galactosidase activity	3.24E-07
12	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.74E-06
13	GO:0003735: structural constituent of ribosome	2.68E-05
14	GO:0004134: 4-alpha-glucanotransferase activity	1.91E-04
15	GO:0045485: omega-6 fatty acid desaturase activity	1.91E-04
16	GO:0005227: calcium activated cation channel activity	1.91E-04
17	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.91E-04
18	GO:0004853: uroporphyrinogen decarboxylase activity	1.91E-04
19	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.29E-04
20	GO:0008967: phosphoglycolate phosphatase activity	4.29E-04
21	GO:0016868: intramolecular transferase activity, phosphotransferases	4.29E-04
22	GO:0010297: heteropolysaccharide binding	4.29E-04
23	GO:0033201: alpha-1,4-glucan synthase activity	4.29E-04
24	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.99E-04
25	GO:0071917: triose-phosphate transmembrane transporter activity	6.99E-04
26	GO:0080054: low-affinity nitrate transmembrane transporter activity	6.99E-04
27	GO:0043169: cation binding	6.99E-04
28	GO:0004373: glycogen (starch) synthase activity	6.99E-04
29	GO:0017150: tRNA dihydrouridine synthase activity	6.99E-04
30	GO:0015203: polyamine transmembrane transporter activity	9.97E-04
31	GO:0016851: magnesium chelatase activity	9.97E-04
32	GO:0016149: translation release factor activity, codon specific	9.97E-04
33	GO:0043023: ribosomal large subunit binding	9.97E-04
34	GO:0009011: starch synthase activity	1.32E-03
35	GO:0042277: peptide binding	1.32E-03
36	GO:0015120: phosphoglycerate transmembrane transporter activity	1.32E-03
37	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.32E-03
38	GO:0019199: transmembrane receptor protein kinase activity	1.32E-03
39	GO:0008725: DNA-3-methyladenine glycosylase activity	1.68E-03
40	GO:0016615: malate dehydrogenase activity	2.07E-03
41	GO:2001070: starch binding	2.07E-03
42	GO:0004130: cytochrome-c peroxidase activity	2.07E-03
43	GO:0016491: oxidoreductase activity	2.43E-03
44	GO:0004602: glutathione peroxidase activity	2.49E-03
45	GO:0051920: peroxiredoxin activity	2.49E-03
46	GO:0030060: L-malate dehydrogenase activity	2.49E-03
47	GO:0005261: cation channel activity	2.49E-03
48	GO:0004033: aldo-keto reductase (NADP) activity	3.40E-03
49	GO:0016209: antioxidant activity	3.40E-03
50	GO:0003747: translation release factor activity	4.40E-03
51	GO:0015174: basic amino acid transmembrane transporter activity	4.93E-03
52	GO:0008047: enzyme activator activity	5.48E-03
53	GO:0051537: 2 iron, 2 sulfur cluster binding	6.02E-03
54	GO:0043621: protein self-association	6.02E-03
55	GO:0044183: protein binding involved in protein folding	6.06E-03
56	GO:0047372: acylglycerol lipase activity	6.06E-03
57	GO:0052689: carboxylic ester hydrolase activity	8.38E-03
58	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	9.25E-03
59	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	9.25E-03
60	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	9.25E-03
61	GO:0004857: enzyme inhibitor activity	9.94E-03
62	GO:0015035: protein disulfide oxidoreductase activity	1.10E-02
63	GO:0016746: transferase activity, transferring acyl groups	1.10E-02
64	GO:0008408: 3'-5' exonuclease activity	1.14E-02
65	GO:0030570: pectate lyase activity	1.29E-02
66	GO:0009055: electron carrier activity	1.32E-02
67	GO:0047134: protein-disulfide reductase activity	1.45E-02
68	GO:0016829: lyase activity	1.45E-02
69	GO:0030170: pyridoxal phosphate binding	1.49E-02
70	GO:0050662: coenzyme binding	1.70E-02
71	GO:0004791: thioredoxin-disulfide reductase activity	1.70E-02
72	GO:0015297: antiporter activity	1.77E-02
73	GO:0048038: quinone binding	1.88E-02
74	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.06E-02
75	GO:0008237: metallopeptidase activity	2.25E-02
76	GO:0005200: structural constituent of cytoskeleton	2.25E-02
77	GO:0102483: scopolin beta-glucosidase activity	2.74E-02
78	GO:0000287: magnesium ion binding	2.82E-02
79	GO:0004601: peroxidase activity	2.87E-02
80	GO:0016788: hydrolase activity, acting on ester bonds	2.93E-02
81	GO:0004222: metalloendopeptidase activity	3.16E-02
82	GO:0030145: manganese ion binding	3.27E-02
83	GO:0008422: beta-glucosidase activity	3.71E-02
84	GO:0051539: 4 iron, 4 sulfur cluster binding	3.83E-02
85	GO:0004364: glutathione transferase activity	4.06E-02
86	GO:0004185: serine-type carboxypeptidase activity	4.18E-02
87	GO:0015293: symporter activity	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0009507: chloroplast	3.10E-29
5	GO:0009534: chloroplast thylakoid	3.40E-23
6	GO:0009570: chloroplast stroma	5.34E-21
7	GO:0009941: chloroplast envelope	2.60E-18
8	GO:0009535: chloroplast thylakoid membrane	5.04E-16
9	GO:0009579: thylakoid	2.84E-12
10	GO:0009706: chloroplast inner membrane	1.10E-06
11	GO:0005840: ribosome	1.87E-06
12	GO:0009543: chloroplast thylakoid lumen	2.19E-06
13	GO:0031977: thylakoid lumen	3.19E-06
14	GO:0048046: apoplast	1.15E-05
15	GO:0030095: chloroplast photosystem II	2.39E-05
16	GO:0009501: amyloplast	1.53E-04
17	GO:0009538: photosystem I reaction center	1.53E-04
18	GO:0000791: euchromatin	1.91E-04
19	GO:0010319: stromule	2.30E-04
20	GO:0009295: nucleoid	2.30E-04
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.33E-04
22	GO:0030870: Mre11 complex	4.29E-04
23	GO:0030093: chloroplast photosystem I	4.29E-04
24	GO:0009508: plastid chromosome	4.93E-04
25	GO:0009536: plastid	5.88E-04
26	GO:0010007: magnesium chelatase complex	6.99E-04
27	GO:0009509: chromoplast	6.99E-04
28	GO:0009654: photosystem II oxygen evolving complex	8.41E-04
29	GO:0000795: synaptonemal complex	1.68E-03
30	GO:0019898: extrinsic component of membrane	1.71E-03
31	GO:0010287: plastoglobule	2.00E-03
32	GO:0009533: chloroplast stromal thylakoid	2.93E-03
33	GO:0016020: membrane	3.24E-03
34	GO:0031305: integral component of mitochondrial inner membrane	3.40E-03
35	GO:0045298: tubulin complex	4.40E-03
36	GO:0005763: mitochondrial small ribosomal subunit	4.40E-03
37	GO:0005740: mitochondrial envelope	5.48E-03
38	GO:0005874: microtubule	7.06E-03
39	GO:0009574: preprophase band	7.28E-03
40	GO:0031969: chloroplast membrane	7.38E-03
41	GO:0042651: thylakoid membrane	1.07E-02
42	GO:0009523: photosystem II	1.79E-02
43	GO:0000785: chromatin	1.97E-02
44	GO:0015934: large ribosomal subunit	3.27E-02
45	GO:0005773: vacuole	3.56E-02
46	GO:0022625: cytosolic large ribosomal subunit	3.74E-02