co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090470: shoot organ boundary specification	0.00E+00
2	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
3	GO:0009304: tRNA transcription	0.00E+00
4	GO:0046677: response to antibiotic	0.00E+00
5	GO:0009661: chromoplast organization	0.00E+00
6	GO:0010243: response to organonitrogen compound	0.00E+00
7	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
8	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
9	GO:0098586: cellular response to virus	0.00E+00
10	GO:0007623: circadian rhythm	9.29E-09
11	GO:0071483: cellular response to blue light	2.15E-08
12	GO:0042754: negative regulation of circadian rhythm	4.63E-07
13	GO:0009658: chloroplast organization	1.10E-06
14	GO:2001141: regulation of RNA biosynthetic process	4.19E-06
15	GO:0010189: vitamin E biosynthetic process	2.87E-05
16	GO:0048574: long-day photoperiodism, flowering	6.46E-05
17	GO:0010100: negative regulation of photomorphogenesis	6.46E-05
18	GO:0015995: chlorophyll biosynthetic process	8.49E-05
19	GO:0071277: cellular response to calcium ion	9.33E-05
20	GO:0046467: membrane lipid biosynthetic process	9.33E-05
21	GO:0031426: polycistronic mRNA processing	9.33E-05
22	GO:0071461: cellular response to redox state	9.33E-05
23	GO:0010362: negative regulation of anion channel activity by blue light	9.33E-05
24	GO:0018298: protein-chromophore linkage	9.90E-05
25	GO:0006352: DNA-templated transcription, initiation	1.37E-04
26	GO:0010207: photosystem II assembly	2.08E-04
27	GO:0042548: regulation of photosynthesis, light reaction	2.20E-04
28	GO:0006898: receptor-mediated endocytosis	2.20E-04
29	GO:0043496: regulation of protein homodimerization activity	2.20E-04
30	GO:0080005: photosystem stoichiometry adjustment	2.20E-04
31	GO:0000256: allantoin catabolic process	2.20E-04
32	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.20E-04
33	GO:1904143: positive regulation of carotenoid biosynthetic process	2.20E-04
34	GO:0016122: xanthophyll metabolic process	2.20E-04
35	GO:0042853: L-alanine catabolic process	2.20E-04
36	GO:0046741: transport of virus in host, tissue to tissue	2.20E-04
37	GO:0009915: phloem sucrose loading	2.20E-04
38	GO:0009644: response to high light intensity	2.22E-04
39	GO:0010136: ureide catabolic process	3.67E-04
40	GO:0015979: photosynthesis	3.95E-04
41	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	5.28E-04
42	GO:0006145: purine nucleobase catabolic process	5.28E-04
43	GO:0043572: plastid fission	5.28E-04
44	GO:0010371: regulation of gibberellin biosynthetic process	5.28E-04
45	GO:0071484: cellular response to light intensity	5.28E-04
46	GO:0010239: chloroplast mRNA processing	5.28E-04
47	GO:0019252: starch biosynthetic process	6.66E-04
48	GO:0009902: chloroplast relocation	7.02E-04
49	GO:0010021: amylopectin biosynthetic process	7.02E-04
50	GO:0015994: chlorophyll metabolic process	7.02E-04
51	GO:0016120: carotene biosynthetic process	8.88E-04
52	GO:0010117: photoprotection	8.88E-04
53	GO:0009904: chloroplast accumulation movement	8.88E-04
54	GO:0010236: plastoquinone biosynthetic process	8.88E-04
55	GO:0071805: potassium ion transmembrane transport	9.05E-04
56	GO:0009643: photosynthetic acclimation	1.08E-03
57	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.08E-03
58	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.08E-03
59	GO:0009903: chloroplast avoidance movement	1.29E-03
60	GO:0071470: cellular response to osmotic stress	1.29E-03
61	GO:0070370: cellular heat acclimation	1.51E-03
62	GO:0009637: response to blue light	1.64E-03
63	GO:0034599: cellular response to oxidative stress	1.71E-03
64	GO:0045893: positive regulation of transcription, DNA-templated	1.71E-03
65	GO:0009704: de-etiolation	1.75E-03
66	GO:0050821: protein stabilization	1.75E-03
67	GO:0009657: plastid organization	2.00E-03
68	GO:0009932: cell tip growth	2.00E-03
69	GO:0071482: cellular response to light stimulus	2.00E-03
70	GO:0010114: response to red light	2.10E-03
71	GO:0048507: meristem development	2.25E-03
72	GO:0010206: photosystem II repair	2.25E-03
73	GO:0034765: regulation of ion transmembrane transport	2.25E-03
74	GO:0090333: regulation of stomatal closure	2.25E-03
75	GO:0010205: photoinhibition	2.52E-03
76	GO:0009638: phototropism	2.52E-03
77	GO:0009098: leucine biosynthetic process	2.52E-03
78	GO:0009641: shade avoidance	2.80E-03
79	GO:0006259: DNA metabolic process	2.80E-03
80	GO:0009773: photosynthetic electron transport in photosystem I	3.09E-03
81	GO:0008285: negative regulation of cell proliferation	3.09E-03
82	GO:0006265: DNA topological change	3.09E-03
83	GO:0016485: protein processing	3.09E-03
84	GO:0009767: photosynthetic electron transport chain	3.69E-03
85	GO:0005986: sucrose biosynthetic process	3.69E-03
86	GO:0010020: chloroplast fission	4.01E-03
87	GO:0007015: actin filament organization	4.01E-03
88	GO:0010223: secondary shoot formation	4.01E-03
89	GO:0009266: response to temperature stimulus	4.01E-03
90	GO:0006071: glycerol metabolic process	4.67E-03
91	GO:0010073: meristem maintenance	5.36E-03
92	GO:0051302: regulation of cell division	5.36E-03
93	GO:0008299: isoprenoid biosynthetic process	5.36E-03
94	GO:0010227: floral organ abscission	6.47E-03
95	GO:0006817: phosphate ion transport	6.85E-03
96	GO:0042391: regulation of membrane potential	7.65E-03
97	GO:0010118: stomatal movement	7.65E-03
98	GO:0006606: protein import into nucleus	7.65E-03
99	GO:0009739: response to gibberellin	7.69E-03
100	GO:0010182: sugar mediated signaling pathway	8.06E-03
101	GO:0010468: regulation of gene expression	8.21E-03
102	GO:0042752: regulation of circadian rhythm	8.47E-03
103	GO:0007059: chromosome segregation	8.47E-03
104	GO:0009791: post-embryonic development	8.90E-03
105	GO:0000302: response to reactive oxygen species	9.33E-03
106	GO:0019761: glucosinolate biosynthetic process	9.78E-03
107	GO:0010027: thylakoid membrane organization	1.21E-02
108	GO:0055114: oxidation-reduction process	1.23E-02
109	GO:0009723: response to ethylene	1.23E-02
110	GO:0009737: response to abscisic acid	1.27E-02
111	GO:0000160: phosphorelay signal transduction system	1.51E-02
112	GO:0006811: ion transport	1.56E-02
113	GO:0010218: response to far red light	1.56E-02
114	GO:0009853: photorespiration	1.73E-02
115	GO:0009751: response to salicylic acid	1.93E-02
116	GO:0006631: fatty acid metabolic process	1.95E-02
117	GO:0006281: DNA repair	1.96E-02
118	GO:0009640: photomorphogenesis	2.07E-02
119	GO:0009753: response to jasmonic acid	2.10E-02
120	GO:0031347: regulation of defense response	2.37E-02
121	GO:0042538: hyperosmotic salinity response	2.43E-02
122	GO:0009651: response to salt stress	2.50E-02
123	GO:0006813: potassium ion transport	2.55E-02
124	GO:0009409: response to cold	2.55E-02
125	GO:0006417: regulation of translation	2.75E-02
126	GO:0006810: transport	2.83E-02
127	GO:0006096: glycolytic process	2.88E-02
128	GO:0046686: response to cadmium ion	3.04E-02
129	GO:0009735: response to cytokinin	3.18E-02
130	GO:0009624: response to nematode	3.28E-02
131	GO:0006396: RNA processing	3.35E-02
132	GO:0035556: intracellular signal transduction	3.66E-02
133	GO:0009058: biosynthetic process	4.00E-02
134	GO:0010228: vegetative to reproductive phase transition of meristem	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009976: tocopherol cyclase activity	0.00E+00
2	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
3	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
4	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
5	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
6	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
7	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
8	GO:0003913: DNA photolyase activity	1.76E-06
9	GO:0004373: glycogen (starch) synthase activity	1.76E-06
10	GO:0009011: starch synthase activity	7.97E-06
11	GO:0001053: plastid sigma factor activity	7.97E-06
12	GO:0016987: sigma factor activity	7.97E-06
13	GO:0000989: transcription factor activity, transcription factor binding	8.01E-05
14	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	9.33E-05
15	GO:0004328: formamidase activity	9.33E-05
16	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	9.33E-05
17	GO:0035671: enone reductase activity	9.33E-05
18	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	9.33E-05
19	GO:0019904: protein domain specific binding	1.37E-04
20	GO:0003862: 3-isopropylmalate dehydrogenase activity	2.20E-04
21	GO:0033201: alpha-1,4-glucan synthase activity	2.20E-04
22	GO:0050347: trans-octaprenyltranstransferase activity	2.20E-04
23	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.20E-04
24	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.99E-04
25	GO:0004848: ureidoglycolate hydrolase activity	3.67E-04
26	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	3.67E-04
27	GO:0050307: sucrose-phosphate phosphatase activity	3.67E-04
28	GO:0004180: carboxypeptidase activity	3.67E-04
29	GO:0010277: chlorophyllide a oxygenase [overall] activity	3.67E-04
30	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	5.28E-04
31	GO:0016851: magnesium chelatase activity	5.28E-04
32	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	5.28E-04
33	GO:0009882: blue light photoreceptor activity	5.28E-04
34	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	5.28E-04
35	GO:0048027: mRNA 5'-UTR binding	5.28E-04
36	GO:0010181: FMN binding	6.22E-04
37	GO:0016853: isomerase activity	6.22E-04
38	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	7.02E-04
39	GO:0008453: alanine-glyoxylate transaminase activity	7.02E-04
40	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	8.88E-04
41	GO:0051538: 3 iron, 4 sulfur cluster binding	8.88E-04
42	GO:0008237: metallopeptidase activity	9.05E-04
43	GO:0000293: ferric-chelate reductase activity	1.08E-03
44	GO:0004709: MAP kinase kinase kinase activity	1.08E-03
45	GO:0016887: ATPase activity	1.13E-03
46	GO:0005242: inward rectifier potassium channel activity	1.29E-03
47	GO:0009881: photoreceptor activity	1.51E-03
48	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.00E-03
49	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.25E-03
50	GO:0001054: RNA polymerase I activity	3.09E-03
51	GO:0001056: RNA polymerase III activity	3.38E-03
52	GO:0005315: inorganic phosphate transmembrane transporter activity	3.69E-03
53	GO:0000155: phosphorelay sensor kinase activity	3.69E-03
54	GO:0015079: potassium ion transmembrane transporter activity	5.36E-03
55	GO:0004176: ATP-dependent peptidase activity	5.72E-03
56	GO:0022891: substrate-specific transmembrane transporter activity	6.47E-03
57	GO:0003727: single-stranded RNA binding	6.85E-03
58	GO:0005249: voltage-gated potassium channel activity	7.65E-03
59	GO:0030551: cyclic nucleotide binding	7.65E-03
60	GO:0008080: N-acetyltransferase activity	8.06E-03
61	GO:0042802: identical protein binding	8.74E-03
62	GO:0048038: quinone binding	9.33E-03
63	GO:0005515: protein binding	9.44E-03
64	GO:0000287: magnesium ion binding	1.05E-02
65	GO:0016791: phosphatase activity	1.07E-02
66	GO:0016168: chlorophyll binding	1.26E-02
67	GO:0004721: phosphoprotein phosphatase activity	1.36E-02
68	GO:0008236: serine-type peptidase activity	1.41E-02
69	GO:0004222: metalloendopeptidase activity	1.56E-02
70	GO:0030145: manganese ion binding	1.62E-02
71	GO:0003677: DNA binding	1.64E-02
72	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.84E-02
73	GO:0051537: 2 iron, 2 sulfur cluster binding	2.18E-02
74	GO:0043621: protein self-association	2.18E-02
75	GO:0015293: symporter activity	2.24E-02
76	GO:0051287: NAD binding	2.37E-02
77	GO:0016874: ligase activity	3.15E-02
78	GO:0016746: transferase activity, transferring acyl groups	3.35E-02
79	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.93E-02
80	GO:0016829: lyase activity	4.07E-02
81	GO:0030170: pyridoxal phosphate binding	4.15E-02
82	GO:0008565: protein transporter activity	4.38E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.69E-19
2	GO:0009535: chloroplast thylakoid membrane	5.34E-08
3	GO:0009570: chloroplast stroma	9.22E-06
4	GO:0009706: chloroplast inner membrane	3.83E-05
5	GO:0009534: chloroplast thylakoid	5.22E-05
6	GO:0009941: chloroplast envelope	8.04E-05
7	GO:0009569: chloroplast starch grain	2.20E-04
8	GO:0045254: pyruvate dehydrogenase complex	2.20E-04
9	GO:0042651: thylakoid membrane	3.24E-04
10	GO:0010007: magnesium chelatase complex	3.67E-04
11	GO:0010287: plastoglobule	5.87E-04
12	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	7.02E-04
13	GO:0031982: vesicle	1.75E-03
14	GO:0009501: amyloplast	1.75E-03
15	GO:0009579: thylakoid	1.82E-03
16	GO:0031969: chloroplast membrane	2.11E-03
17	GO:0042644: chloroplast nucleoid	2.25E-03
18	GO:0005736: DNA-directed RNA polymerase I complex	2.25E-03
19	GO:0005666: DNA-directed RNA polymerase III complex	2.52E-03
20	GO:0009536: plastid	5.52E-03
21	GO:0009532: plastid stroma	5.72E-03
22	GO:0005777: peroxisome	8.49E-03
23	GO:0009523: photosystem II	8.90E-03
24	GO:0009295: nucleoid	1.11E-02
25	GO:0010319: stromule	1.11E-02
26	GO:0009707: chloroplast outer membrane	1.46E-02
27	GO:0005739: mitochondrion	2.86E-02
28	GO:0005759: mitochondrial matrix	4.53E-02