co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
2	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0032928: regulation of superoxide anion generation	0.00E+00
6	GO:0006907: pinocytosis	0.00E+00
7	GO:0009249: protein lipoylation	0.00E+00
8	GO:0051776: detection of redox state	0.00E+00
9	GO:0009583: detection of light stimulus	0.00E+00
10	GO:0046294: formaldehyde catabolic process	0.00E+00
11	GO:0009106: lipoate metabolic process	0.00E+00
12	GO:0010117: photoprotection	2.60E-05
13	GO:0034971: histone H3-R17 methylation	1.40E-04
14	GO:0072387: flavin adenine dinucleotide metabolic process	1.40E-04
15	GO:0048438: floral whorl development	1.40E-04
16	GO:0034970: histone H3-R2 methylation	1.40E-04
17	GO:0034972: histone H3-R26 methylation	1.40E-04
18	GO:1900426: positive regulation of defense response to bacterium	1.76E-04
19	GO:0010617: circadian regulation of calcium ion oscillation	3.20E-04
20	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.20E-04
21	GO:0099402: plant organ development	3.20E-04
22	GO:0016122: xanthophyll metabolic process	3.20E-04
23	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	3.20E-04
24	GO:0071712: ER-associated misfolded protein catabolic process	3.20E-04
25	GO:0010343: singlet oxygen-mediated programmed cell death	3.20E-04
26	GO:1901529: positive regulation of anion channel activity	3.20E-04
27	GO:0009150: purine ribonucleotide metabolic process	5.26E-04
28	GO:0071492: cellular response to UV-A	5.26E-04
29	GO:0006275: regulation of DNA replication	5.26E-04
30	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	5.26E-04
31	GO:1902448: positive regulation of shade avoidance	5.26E-04
32	GO:0042276: error-prone translesion synthesis	5.26E-04
33	GO:1901672: positive regulation of systemic acquired resistance	5.26E-04
34	GO:0033014: tetrapyrrole biosynthetic process	7.53E-04
35	GO:1901332: negative regulation of lateral root development	7.53E-04
36	GO:1902290: positive regulation of defense response to oomycetes	7.53E-04
37	GO:1902347: response to strigolactone	9.98E-04
38	GO:0034613: cellular protein localization	9.98E-04
39	GO:0010109: regulation of photosynthesis	9.98E-04
40	GO:0071486: cellular response to high light intensity	9.98E-04
41	GO:0031935: regulation of chromatin silencing	9.98E-04
42	GO:0009765: photosynthesis, light harvesting	9.98E-04
43	GO:0006221: pyrimidine nucleotide biosynthetic process	9.98E-04
44	GO:0006749: glutathione metabolic process	9.98E-04
45	GO:0046283: anthocyanin-containing compound metabolic process	1.26E-03
46	GO:0009107: lipoate biosynthetic process	1.26E-03
47	GO:0010438: cellular response to sulfur starvation	1.26E-03
48	GO:0060918: auxin transport	1.55E-03
49	GO:0006796: phosphate-containing compound metabolic process	1.55E-03
50	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.55E-03
51	GO:0016070: RNA metabolic process	1.55E-03
52	GO:0031053: primary miRNA processing	1.55E-03
53	GO:0045962: positive regulation of development, heterochronic	1.55E-03
54	GO:1901371: regulation of leaf morphogenesis	1.55E-03
55	GO:0000741: karyogamy	1.55E-03
56	GO:0016126: sterol biosynthetic process	1.71E-03
57	GO:0010076: maintenance of floral meristem identity	1.86E-03
58	GO:0010016: shoot system morphogenesis	1.86E-03
59	GO:0010019: chloroplast-nucleus signaling pathway	1.86E-03
60	GO:0010310: regulation of hydrogen peroxide metabolic process	1.86E-03
61	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.86E-03
62	GO:0034389: lipid particle organization	1.86E-03
63	GO:0051510: regulation of unidimensional cell growth	2.18E-03
64	GO:0071446: cellular response to salicylic acid stimulus	2.18E-03
65	GO:0080111: DNA demethylation	2.18E-03
66	GO:0010439: regulation of glucosinolate biosynthetic process	2.52E-03
67	GO:0009704: de-etiolation	2.52E-03
68	GO:0045292: mRNA cis splicing, via spliceosome	2.52E-03
69	GO:1900150: regulation of defense response to fungus	2.52E-03
70	GO:0019430: removal of superoxide radicals	2.88E-03
71	GO:0010100: negative regulation of photomorphogenesis	2.88E-03
72	GO:0032544: plastid translation	2.88E-03
73	GO:2000031: regulation of salicylic acid mediated signaling pathway	2.88E-03
74	GO:0022900: electron transport chain	2.88E-03
75	GO:0046916: cellular transition metal ion homeostasis	3.26E-03
76	GO:0006783: heme biosynthetic process	3.26E-03
77	GO:0015780: nucleotide-sugar transport	3.26E-03
78	GO:0019432: triglyceride biosynthetic process	3.26E-03
79	GO:0009638: phototropism	3.65E-03
80	GO:0006779: porphyrin-containing compound biosynthetic process	3.65E-03
81	GO:0048366: leaf development	3.96E-03
82	GO:0009688: abscisic acid biosynthetic process	4.06E-03
83	GO:0030422: production of siRNA involved in RNA interference	4.06E-03
84	GO:0006260: DNA replication	4.36E-03
85	GO:0043085: positive regulation of catalytic activity	4.48E-03
86	GO:0009682: induced systemic resistance	4.48E-03
87	GO:0006790: sulfur compound metabolic process	4.92E-03
88	GO:0010582: floral meristem determinacy	4.92E-03
89	GO:0050826: response to freezing	5.37E-03
90	GO:0010075: regulation of meristem growth	5.37E-03
91	GO:0009767: photosynthetic electron transport chain	5.37E-03
92	GO:0009785: blue light signaling pathway	5.37E-03
93	GO:0010207: photosystem II assembly	5.84E-03
94	GO:0009266: response to temperature stimulus	5.84E-03
95	GO:0032259: methylation	6.56E-03
96	GO:0009751: response to salicylic acid	6.81E-03
97	GO:0006071: glycerol metabolic process	6.81E-03
98	GO:0000162: tryptophan biosynthetic process	6.81E-03
99	GO:2000377: regulation of reactive oxygen species metabolic process	7.32E-03
100	GO:0019915: lipid storage	8.38E-03
101	GO:0006306: DNA methylation	8.38E-03
102	GO:0009625: response to insect	9.48E-03
103	GO:0010118: stomatal movement	1.12E-02
104	GO:0009958: positive gravitropism	1.18E-02
105	GO:0010197: polar nucleus fusion	1.18E-02
106	GO:0009451: RNA modification	1.22E-02
107	GO:0042752: regulation of circadian rhythm	1.25E-02
108	GO:0009646: response to absence of light	1.25E-02
109	GO:0009851: auxin biosynthetic process	1.31E-02
110	GO:0009617: response to bacterium	1.43E-02
111	GO:0000910: cytokinesis	1.71E-02
112	GO:0016579: protein deubiquitination	1.71E-02
113	GO:0009615: response to virus	1.79E-02
114	GO:0009816: defense response to bacterium, incompatible interaction	1.86E-02
115	GO:0015995: chlorophyll biosynthetic process	2.00E-02
116	GO:0018298: protein-chromophore linkage	2.16E-02
117	GO:0008219: cell death	2.16E-02
118	GO:0009407: toxin catabolic process	2.31E-02
119	GO:0010218: response to far red light	2.31E-02
120	GO:0006811: ion transport	2.31E-02
121	GO:0009910: negative regulation of flower development	2.39E-02
122	GO:0009637: response to blue light	2.55E-02
123	GO:0045454: cell redox homeostasis	2.75E-02
124	GO:0030001: metal ion transport	2.80E-02
125	GO:0006839: mitochondrial transport	2.80E-02
126	GO:0009640: photomorphogenesis	3.06E-02
127	GO:0008283: cell proliferation	3.06E-02
128	GO:0010114: response to red light	3.06E-02
129	GO:0009644: response to high light intensity	3.23E-02
130	GO:0008643: carbohydrate transport	3.23E-02
131	GO:0009636: response to toxic substance	3.32E-02
132	GO:0009965: leaf morphogenesis	3.32E-02
133	GO:0000165: MAPK cascade	3.50E-02
134	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.50E-02
135	GO:0009585: red, far-red light phototransduction	3.78E-02
136	GO:0030154: cell differentiation	3.87E-02
137	GO:0051603: proteolysis involved in cellular protein catabolic process	3.87E-02
138	GO:0009909: regulation of flower development	4.06E-02
139	GO:0006417: regulation of translation	4.06E-02
140	GO:0048367: shoot system development	4.35E-02
141	GO:0055114: oxidation-reduction process	4.71E-02
142	GO:0006396: RNA processing	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
4	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
5	GO:0004848: ureidoglycolate hydrolase activity	3.63E-06
6	GO:0046906: tetrapyrrole binding	1.40E-04
7	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.40E-04
8	GO:0030337: DNA polymerase processivity factor activity	1.40E-04
9	GO:0004325: ferrochelatase activity	1.40E-04
10	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	3.20E-04
11	GO:0017118: lipoyltransferase activity	3.20E-04
12	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	3.20E-04
13	GO:0044390: ubiquitin-like protein conjugating enzyme binding	3.20E-04
14	GO:0016415: octanoyltransferase activity	3.20E-04
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.20E-04
16	GO:0015929: hexosaminidase activity	3.20E-04
17	GO:0004563: beta-N-acetylhexosaminidase activity	3.20E-04
18	GO:0035241: protein-arginine omega-N monomethyltransferase activity	3.20E-04
19	GO:0008168: methyltransferase activity	5.12E-04
20	GO:0000900: translation repressor activity, nucleic acid binding	5.26E-04
21	GO:0008469: histone-arginine N-methyltransferase activity	5.26E-04
22	GO:0000339: RNA cap binding	7.53E-04
23	GO:0009882: blue light photoreceptor activity	7.53E-04
24	GO:0047627: adenylylsulfatase activity	7.53E-04
25	GO:0000254: C-4 methylsterol oxidase activity	7.53E-04
26	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	9.98E-04
27	GO:0004834: tryptophan synthase activity	9.98E-04
28	GO:0004784: superoxide dismutase activity	1.55E-03
29	GO:0004144: diacylglycerol O-acyltransferase activity	1.86E-03
30	GO:0019899: enzyme binding	2.18E-03
31	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.18E-03
32	GO:0004427: inorganic diphosphatase activity	2.18E-03
33	GO:0004525: ribonuclease III activity	2.52E-03
34	GO:0046914: transition metal ion binding	2.88E-03
35	GO:0071949: FAD binding	3.26E-03
36	GO:0001055: RNA polymerase II activity	3.65E-03
37	GO:0016491: oxidoreductase activity	3.86E-03
38	GO:0004713: protein tyrosine kinase activity	4.06E-03
39	GO:0001054: RNA polymerase I activity	4.48E-03
40	GO:0004860: protein kinase inhibitor activity	4.48E-03
41	GO:0001056: RNA polymerase III activity	4.92E-03
42	GO:0031072: heat shock protein binding	5.37E-03
43	GO:0022857: transmembrane transporter activity	6.49E-03
44	GO:0003887: DNA-directed DNA polymerase activity	6.81E-03
45	GO:0004176: ATP-dependent peptidase activity	8.38E-03
46	GO:0035251: UDP-glucosyltransferase activity	8.38E-03
47	GO:0003713: transcription coactivator activity	1.18E-02
48	GO:0010181: FMN binding	1.25E-02
49	GO:0048038: quinone binding	1.37E-02
50	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.37E-02
51	GO:0004518: nuclease activity	1.44E-02
52	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.51E-02
53	GO:0008237: metallopeptidase activity	1.64E-02
54	GO:0046982: protein heterodimerization activity	1.82E-02
55	GO:0016168: chlorophyll binding	1.86E-02
56	GO:0004806: triglyceride lipase activity	2.00E-02
57	GO:0043531: ADP binding	2.03E-02
58	GO:0004222: metalloendopeptidase activity	2.31E-02
59	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.72E-02
60	GO:0051539: 4 iron, 4 sulfur cluster binding	2.80E-02
61	GO:0042803: protein homodimerization activity	2.88E-02
62	GO:0004364: glutathione transferase activity	2.97E-02
63	GO:0004185: serine-type carboxypeptidase activity	3.06E-02
64	GO:0003723: RNA binding	3.20E-02
65	GO:0051537: 2 iron, 2 sulfur cluster binding	3.23E-02
66	GO:0004519: endonuclease activity	3.69E-02
67	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.78E-02
68	GO:0008234: cysteine-type peptidase activity	4.06E-02
69	GO:0051082: unfolded protein binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	4.48E-05
2	GO:0009507: chloroplast	8.06E-05
3	GO:0005845: mRNA cap binding complex	1.40E-04
4	GO:0005846: nuclear cap binding complex	3.20E-04
5	GO:0016605: PML body	5.26E-04
6	GO:0036513: Derlin-1 retrotranslocation complex	7.53E-04
7	GO:0042646: plastid nucleoid	7.53E-04
8	GO:0009517: PSII associated light-harvesting complex II	9.98E-04
9	GO:0055035: plastid thylakoid membrane	1.26E-03
10	GO:0000123: histone acetyltransferase complex	2.18E-03
11	GO:0005811: lipid particle	2.88E-03
12	GO:0046930: pore complex	2.88E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.26E-03
14	GO:0042644: chloroplast nucleoid	3.26E-03
15	GO:0016604: nuclear body	3.65E-03
16	GO:0031969: chloroplast membrane	4.23E-03
17	GO:0030176: integral component of endoplasmic reticulum membrane	6.32E-03
18	GO:0000419: DNA-directed RNA polymerase V complex	6.81E-03
19	GO:0015935: small ribosomal subunit	8.38E-03
20	GO:0009536: plastid	1.28E-02
21	GO:0009523: photosystem II	1.31E-02
22	GO:0009295: nucleoid	1.64E-02
23	GO:0009534: chloroplast thylakoid	1.83E-02
24	GO:0019005: SCF ubiquitin ligase complex	2.16E-02
25	GO:0005743: mitochondrial inner membrane	3.16E-02
26	GO:0031966: mitochondrial membrane	3.59E-02
27	GO:0043231: intracellular membrane-bounded organelle	3.74E-02