Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901703: protein localization involved in auxin polar transport1.65E-05
2GO:0060145: viral gene silencing in virus induced gene silencing3.04E-05
3GO:0010452: histone H3-K36 methylation3.04E-05
4GO:0070919: production of siRNA involved in chromatin silencing by small RNA3.04E-05
5GO:1904278: positive regulation of wax biosynthetic process3.04E-05
6GO:0008283: cell proliferation6.58E-05
7GO:0010387: COP9 signalosome assembly6.61E-05
8GO:0051568: histone H3-K4 methylation1.10E-04
9GO:0009554: megasporogenesis1.34E-04
10GO:0035196: production of miRNAs involved in gene silencing by miRNA1.60E-04
11GO:0000338: protein deneddylation1.60E-04
12GO:0010267: production of ta-siRNAs involved in RNA interference2.72E-04
13GO:0010449: root meristem growth2.72E-04
14GO:0016441: posttranscriptional gene silencing3.02E-04
15GO:0048229: gametophyte development3.33E-04
16GO:0006289: nucleotide-excision repair5.33E-04
17GO:0000027: ribosomal large subunit assembly5.33E-04
18GO:0010073: meristem maintenance5.68E-04
19GO:0009556: microsporogenesis9.08E-04
20GO:0051607: defense response to virus1.16E-03
21GO:0016049: cell growth1.38E-03
22GO:0009910: negative regulation of flower development1.57E-03
23GO:0009965: leaf morphogenesis2.14E-03
24GO:0009585: red, far-red light phototransduction2.41E-03
25GO:0009553: embryo sac development3.00E-03
26GO:0000398: mRNA splicing, via spliceosome3.37E-03
27GO:0042254: ribosome biogenesis6.06E-03
28GO:0032259: methylation8.84E-03
29GO:0048364: root development9.38E-03
30GO:0006357: regulation of transcription from RNA polymerase II promoter1.11E-02
31GO:0009734: auxin-activated signaling pathway1.16E-02
32GO:0006412: translation1.18E-02
33GO:0009908: flower development1.27E-02
34GO:0051301: cell division1.45E-02
35GO:0006511: ubiquitin-dependent protein catabolic process1.70E-02
36GO:0007275: multicellular organism development3.66E-02
37GO:0009793: embryo development ending in seed dormancy4.11E-02
RankGO TermAdjusted P value
1GO:0035614: snRNA stem-loop binding6.06E-06
2GO:1990585: hydroxyproline O-arabinosyltransferase activity1.65E-05
3GO:0030619: U1 snRNA binding1.65E-05
4GO:0008097: 5S rRNA binding4.72E-05
5GO:0003725: double-stranded RNA binding3.97E-04
6GO:0003735: structural constituent of ribosome4.51E-03
7GO:0008168: methyltransferase activity5.83E-03
8GO:0000166: nucleotide binding1.37E-02
RankGO TermAdjusted P value
1GO:0005675: holo TFIIH complex0.00E+00
2GO:0000439: core TFIIH complex3.04E-05
3GO:0016593: Cdc73/Paf1 complex6.61E-05
4GO:0005801: cis-Golgi network1.34E-04
5GO:0008180: COP9 signalosome2.43E-04
6GO:0005685: U1 snRNP2.43E-04
7GO:0005730: nucleolus4.26E-04
8GO:0005769: early endosome4.98E-04
9GO:0015934: large ribosomal subunit1.57E-03
10GO:0005802: trans-Golgi network1.82E-03
11GO:0005681: spliceosomal complex2.70E-03
12GO:0005834: heterotrimeric G-protein complex2.82E-03
13GO:0005732: small nucleolar ribonucleoprotein complex3.24E-03
14GO:0009705: plant-type vacuole membrane4.43E-03
15GO:0080008: Cul4-RING E3 ubiquitin ligase complex6.38E-03
16GO:0022625: cytosolic large ribosomal subunit7.19E-03
17GO:0005829: cytosol9.27E-03
18GO:0022626: cytosolic ribosome1.32E-02
19GO:0005768: endosome2.09E-02
20GO:0005840: ribosome2.33E-02
21GO:0005737: cytoplasm4.96E-02
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Gene type



Gene DE type