GO Enrichment Analysis of Co-expressed Genes with
AT4G34910
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 6 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 7 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 8 | GO:0006364: rRNA processing | 1.35E-19 |
| 9 | GO:0006412: translation | 4.14E-07 |
| 10 | GO:0009553: embryo sac development | 1.55E-06 |
| 11 | GO:0010162: seed dormancy process | 1.72E-06 |
| 12 | GO:0045039: protein import into mitochondrial inner membrane | 1.76E-06 |
| 13 | GO:0042273: ribosomal large subunit biogenesis | 7.97E-06 |
| 14 | GO:0031120: snRNA pseudouridine synthesis | 9.33E-05 |
| 15 | GO:0000469: cleavage involved in rRNA processing | 9.33E-05 |
| 16 | GO:0031118: rRNA pseudouridine synthesis | 9.33E-05 |
| 17 | GO:0030490: maturation of SSU-rRNA | 9.33E-05 |
| 18 | GO:0000494: box C/D snoRNA 3'-end processing | 9.33E-05 |
| 19 | GO:0043985: histone H4-R3 methylation | 9.33E-05 |
| 20 | GO:1990258: histone glutamine methylation | 9.33E-05 |
| 21 | GO:0006413: translational initiation | 9.36E-05 |
| 22 | GO:0080009: mRNA methylation | 2.20E-04 |
| 23 | GO:0045041: protein import into mitochondrial intermembrane space | 2.20E-04 |
| 24 | GO:0034470: ncRNA processing | 2.20E-04 |
| 25 | GO:0009967: positive regulation of signal transduction | 2.20E-04 |
| 26 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.20E-04 |
| 27 | GO:0042254: ribosome biogenesis | 2.33E-04 |
| 28 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.93E-04 |
| 29 | GO:0000027: ribosomal large subunit assembly | 2.93E-04 |
| 30 | GO:0007005: mitochondrion organization | 3.90E-04 |
| 31 | GO:0009294: DNA mediated transformation | 4.25E-04 |
| 32 | GO:0016569: covalent chromatin modification | 4.38E-04 |
| 33 | GO:0010971: positive regulation of G2/M transition of mitotic cell cycle | 5.28E-04 |
| 34 | GO:0009855: determination of bilateral symmetry | 5.28E-04 |
| 35 | GO:0051131: chaperone-mediated protein complex assembly | 5.28E-04 |
| 36 | GO:0010501: RNA secondary structure unwinding | 5.39E-04 |
| 37 | GO:0000460: maturation of 5.8S rRNA | 7.02E-04 |
| 38 | GO:0006479: protein methylation | 7.02E-04 |
| 39 | GO:0051781: positive regulation of cell division | 7.02E-04 |
| 40 | GO:0046345: abscisic acid catabolic process | 7.02E-04 |
| 41 | GO:0051205: protein insertion into membrane | 7.02E-04 |
| 42 | GO:0006461: protein complex assembly | 8.88E-04 |
| 43 | GO:0031167: rRNA methylation | 8.88E-04 |
| 44 | GO:0000470: maturation of LSU-rRNA | 1.08E-03 |
| 45 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.29E-03 |
| 46 | GO:0006458: 'de novo' protein folding | 1.29E-03 |
| 47 | GO:0042026: protein refolding | 1.29E-03 |
| 48 | GO:0080186: developmental vegetative growth | 1.51E-03 |
| 49 | GO:0046686: response to cadmium ion | 1.95E-03 |
| 50 | GO:0001558: regulation of cell growth | 2.00E-03 |
| 51 | GO:0001510: RNA methylation | 2.00E-03 |
| 52 | GO:0030422: production of siRNA involved in RNA interference | 2.80E-03 |
| 53 | GO:0006259: DNA metabolic process | 2.80E-03 |
| 54 | GO:0006352: DNA-templated transcription, initiation | 3.09E-03 |
| 55 | GO:0006913: nucleocytoplasmic transport | 3.09E-03 |
| 56 | GO:0010582: floral meristem determinacy | 3.38E-03 |
| 57 | GO:0006626: protein targeting to mitochondrion | 3.69E-03 |
| 58 | GO:0010030: positive regulation of seed germination | 4.33E-03 |
| 59 | GO:0030150: protein import into mitochondrial matrix | 5.01E-03 |
| 60 | GO:0051302: regulation of cell division | 5.36E-03 |
| 61 | GO:0061077: chaperone-mediated protein folding | 5.72E-03 |
| 62 | GO:0071215: cellular response to abscisic acid stimulus | 6.47E-03 |
| 63 | GO:0009561: megagametogenesis | 6.85E-03 |
| 64 | GO:0009451: RNA modification | 7.04E-03 |
| 65 | GO:0008033: tRNA processing | 7.65E-03 |
| 66 | GO:0000413: protein peptidyl-prolyl isomerization | 7.65E-03 |
| 67 | GO:0010197: polar nucleus fusion | 8.06E-03 |
| 68 | GO:0009960: endosperm development | 8.06E-03 |
| 69 | GO:0006457: protein folding | 9.90E-03 |
| 70 | GO:0006414: translational elongation | 1.18E-02 |
| 71 | GO:0016049: cell growth | 1.41E-02 |
| 72 | GO:0009793: embryo development ending in seed dormancy | 1.44E-02 |
| 73 | GO:0045892: negative regulation of transcription, DNA-templated | 1.61E-02 |
| 74 | GO:0048527: lateral root development | 1.62E-02 |
| 75 | GO:0009640: photomorphogenesis | 2.07E-02 |
| 76 | GO:0000154: rRNA modification | 2.24E-02 |
| 77 | GO:0009651: response to salt stress | 2.50E-02 |
| 78 | GO:0048367: shoot system development | 2.94E-02 |
| 79 | GO:0009735: response to cytokinin | 3.18E-02 |
| 80 | GO:0006396: RNA processing | 3.35E-02 |
| 81 | GO:0009555: pollen development | 3.47E-02 |
| 82 | GO:0009845: seed germination | 4.07E-02 |
| 83 | GO:0009790: embryo development | 4.30E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0003723: RNA binding | 2.71E-15 |
| 3 | GO:0003735: structural constituent of ribosome | 2.93E-08 |
| 4 | GO:0004407: histone deacetylase activity | 1.03E-07 |
| 5 | GO:0000166: nucleotide binding | 1.75E-07 |
| 6 | GO:0030515: snoRNA binding | 2.84E-07 |
| 7 | GO:0008026: ATP-dependent helicase activity | 4.29E-05 |
| 8 | GO:0004004: ATP-dependent RNA helicase activity | 8.49E-05 |
| 9 | GO:1990259: histone-glutamine methyltransferase activity | 9.33E-05 |
| 10 | GO:0042134: rRNA primary transcript binding | 9.33E-05 |
| 11 | GO:0030371: translation repressor activity | 9.33E-05 |
| 12 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 9.33E-05 |
| 13 | GO:0044183: protein binding involved in protein folding | 1.37E-04 |
| 14 | GO:0003746: translation elongation factor activity | 1.40E-04 |
| 15 | GO:0003743: translation initiation factor activity | 1.40E-04 |
| 16 | GO:0043021: ribonucleoprotein complex binding | 2.20E-04 |
| 17 | GO:0005078: MAP-kinase scaffold activity | 2.20E-04 |
| 18 | GO:0008649: rRNA methyltransferase activity | 3.67E-04 |
| 19 | GO:0070181: small ribosomal subunit rRNA binding | 3.67E-04 |
| 20 | GO:0003924: GTPase activity | 5.88E-04 |
| 21 | GO:0019843: rRNA binding | 6.28E-04 |
| 22 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.30E-03 |
| 23 | GO:0008235: metalloexopeptidase activity | 1.51E-03 |
| 24 | GO:0008135: translation factor activity, RNA binding | 2.00E-03 |
| 25 | GO:0003678: DNA helicase activity | 2.25E-03 |
| 26 | GO:0001055: RNA polymerase II activity | 2.52E-03 |
| 27 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.82E-03 |
| 28 | GO:0001054: RNA polymerase I activity | 3.09E-03 |
| 29 | GO:0004521: endoribonuclease activity | 3.38E-03 |
| 30 | GO:0001056: RNA polymerase III activity | 3.38E-03 |
| 31 | GO:0000049: tRNA binding | 3.38E-03 |
| 32 | GO:0009982: pseudouridine synthase activity | 3.69E-03 |
| 33 | GO:0004519: endonuclease activity | 3.83E-03 |
| 34 | GO:0051082: unfolded protein binding | 3.99E-03 |
| 35 | GO:0003729: mRNA binding | 7.39E-03 |
| 36 | GO:0008168: methyltransferase activity | 1.03E-02 |
| 37 | GO:0003676: nucleic acid binding | 1.07E-02 |
| 38 | GO:0016787: hydrolase activity | 1.28E-02 |
| 39 | GO:0005525: GTP binding | 1.34E-02 |
| 40 | GO:0004721: phosphoprotein phosphatase activity | 1.36E-02 |
| 41 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.41E-02 |
| 42 | GO:0050897: cobalt ion binding | 1.62E-02 |
| 43 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.78E-02 |
| 44 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.31E-02 |
| 45 | GO:0005524: ATP binding | 3.37E-02 |
| 46 | GO:0008565: protein transporter activity | 4.38E-02 |
| 47 | GO:0005507: copper ion binding | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 4.22E-36 |
| 6 | GO:0032040: small-subunit processome | 1.51E-10 |
| 7 | GO:0022627: cytosolic small ribosomal subunit | 6.81E-07 |
| 8 | GO:0005634: nucleus | 7.14E-07 |
| 9 | GO:0022626: cytosolic ribosome | 2.35E-06 |
| 10 | GO:0005840: ribosome | 3.05E-06 |
| 11 | GO:0031428: box C/D snoRNP complex | 2.01E-05 |
| 12 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.49E-05 |
| 13 | GO:0005834: heterotrimeric G-protein complex | 3.02E-05 |
| 14 | GO:0030687: preribosome, large subunit precursor | 3.89E-05 |
| 15 | GO:0005829: cytosol | 5.44E-05 |
| 16 | GO:0030688: preribosome, small subunit precursor | 9.33E-05 |
| 17 | GO:0015030: Cajal body | 9.72E-05 |
| 18 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.37E-04 |
| 19 | GO:0070545: PeBoW complex | 2.20E-04 |
| 20 | GO:0022625: cytosolic large ribosomal subunit | 3.48E-04 |
| 21 | GO:0005743: mitochondrial inner membrane | 5.26E-04 |
| 22 | GO:0031429: box H/ACA snoRNP complex | 5.28E-04 |
| 23 | GO:0005759: mitochondrial matrix | 8.33E-04 |
| 24 | GO:0030529: intracellular ribonucleoprotein complex | 1.01E-03 |
| 25 | GO:0031597: cytosolic proteasome complex | 1.29E-03 |
| 26 | GO:0016363: nuclear matrix | 1.29E-03 |
| 27 | GO:0015934: large ribosomal subunit | 1.50E-03 |
| 28 | GO:0034399: nuclear periphery | 1.75E-03 |
| 29 | GO:0008180: COP9 signalosome | 2.25E-03 |
| 30 | GO:0005736: DNA-directed RNA polymerase I complex | 2.25E-03 |
| 31 | GO:0005666: DNA-directed RNA polymerase III complex | 2.52E-03 |
| 32 | GO:0000418: DNA-directed RNA polymerase IV complex | 2.80E-03 |
| 33 | GO:0005618: cell wall | 2.96E-03 |
| 34 | GO:0005665: DNA-directed RNA polymerase II, core complex | 3.38E-03 |
| 35 | GO:0019013: viral nucleocapsid | 3.69E-03 |
| 36 | GO:0000419: DNA-directed RNA polymerase V complex | 4.67E-03 |
| 37 | GO:0005654: nucleoplasm | 4.86E-03 |
| 38 | GO:0005758: mitochondrial intermembrane space | 5.01E-03 |
| 39 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 6.85E-03 |
| 40 | GO:0016592: mediator complex | 9.78E-03 |
| 41 | GO:0009506: plasmodesma | 1.15E-02 |
| 42 | GO:0005737: cytoplasm | 2.37E-02 |
| 43 | GO:0005774: vacuolar membrane | 2.62E-02 |
| 44 | GO:0005747: mitochondrial respiratory chain complex I | 2.94E-02 |
| 45 | GO:0016607: nuclear speck | 2.94E-02 |
| 46 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.49E-02 |
| 47 | GO:0005773: vacuole | 4.86E-02 |