co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34830

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019685: photosynthesis, dark reaction	0.00E+00
2	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0097164: ammonium ion metabolic process	0.00E+00
5	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
6	GO:0006907: pinocytosis	0.00E+00
7	GO:0016123: xanthophyll biosynthetic process	8.07E-08
8	GO:0010343: singlet oxygen-mediated programmed cell death	6.64E-07
9	GO:0080005: photosystem stoichiometry adjustment	6.64E-07
10	GO:0071482: cellular response to light stimulus	1.06E-06
11	GO:0006352: DNA-templated transcription, initiation	3.62E-06
12	GO:0090307: mitotic spindle assembly	5.94E-06
13	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	5.94E-06
14	GO:2001141: regulation of RNA biosynthetic process	5.94E-06
15	GO:0009902: chloroplast relocation	1.12E-05
16	GO:0016120: carotene biosynthetic process	1.85E-05
17	GO:0000304: response to singlet oxygen	1.85E-05
18	GO:0009658: chloroplast organization	3.76E-05
19	GO:0048564: photosystem I assembly	6.94E-05
20	GO:0034970: histone H3-R2 methylation	1.14E-04
21	GO:0010362: negative regulation of anion channel activity by blue light	1.14E-04
22	GO:0015969: guanosine tetraphosphate metabolic process	1.14E-04
23	GO:0034972: histone H3-R26 methylation	1.14E-04
24	GO:1902265: abscisic acid homeostasis	1.14E-04
25	GO:0051418: microtubule nucleation by microtubule organizing center	1.14E-04
26	GO:0034971: histone H3-R17 methylation	1.14E-04
27	GO:0042371: vitamin K biosynthetic process	1.14E-04
28	GO:0071454: cellular response to anoxia	1.14E-04
29	GO:0071461: cellular response to redox state	1.14E-04
30	GO:0034080: CENP-A containing nucleosome assembly	1.14E-04
31	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	2.65E-04
32	GO:0080153: negative regulation of reductive pentose-phosphate cycle	2.65E-04
33	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.65E-04
34	GO:0033566: gamma-tubulin complex localization	2.65E-04
35	GO:0060359: response to ammonium ion	2.65E-04
36	GO:0034755: iron ion transmembrane transport	2.65E-04
37	GO:0070981: L-asparagine biosynthetic process	2.65E-04
38	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.65E-04
39	GO:0006529: asparagine biosynthetic process	2.65E-04
40	GO:0090351: seedling development	3.08E-04
41	GO:0007052: mitotic spindle organization	4.38E-04
42	GO:0045910: negative regulation of DNA recombination	4.38E-04
43	GO:0031022: nuclear migration along microfilament	4.38E-04
44	GO:0006013: mannose metabolic process	4.38E-04
45	GO:0009150: purine ribonucleotide metabolic process	4.38E-04
46	GO:0006696: ergosterol biosynthetic process	4.38E-04
47	GO:0043157: response to cation stress	4.38E-04
48	GO:0010371: regulation of gibberellin biosynthetic process	6.29E-04
49	GO:0033014: tetrapyrrole biosynthetic process	6.29E-04
50	GO:0034508: centromere complex assembly	6.29E-04
51	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.29E-04
52	GO:0016117: carotenoid biosynthetic process	6.47E-04
53	GO:0009765: photosynthesis, light harvesting	8.35E-04
54	GO:0031122: cytoplasmic microtubule organization	8.35E-04
55	GO:0071483: cellular response to blue light	8.35E-04
56	GO:0009959: negative gravitropism	1.29E-03
57	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.29E-03
58	GO:0016126: sterol biosynthetic process	1.30E-03
59	GO:0010228: vegetative to reproductive phase transition of meristem	1.38E-03
60	GO:0015995: chlorophyll biosynthetic process	1.53E-03
61	GO:0009903: chloroplast avoidance movement	1.54E-03
62	GO:0010019: chloroplast-nucleus signaling pathway	1.54E-03
63	GO:0006401: RNA catabolic process	1.81E-03
64	GO:1900056: negative regulation of leaf senescence	1.81E-03
65	GO:0009231: riboflavin biosynthetic process	2.09E-03
66	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.09E-03
67	GO:0006402: mRNA catabolic process	2.09E-03
68	GO:0009704: de-etiolation	2.09E-03
69	GO:0009637: response to blue light	2.13E-03
70	GO:0022900: electron transport chain	2.39E-03
71	GO:0015780: nucleotide-sugar transport	2.70E-03
72	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.70E-03
73	GO:0006783: heme biosynthetic process	2.70E-03
74	GO:0009744: response to sucrose	2.74E-03
75	GO:0009638: phototropism	3.02E-03
76	GO:0006779: porphyrin-containing compound biosynthetic process	3.02E-03
77	GO:0010380: regulation of chlorophyll biosynthetic process	3.02E-03
78	GO:0031425: chloroplast RNA processing	3.02E-03
79	GO:0006298: mismatch repair	3.36E-03
80	GO:0045036: protein targeting to chloroplast	3.36E-03
81	GO:0008285: negative regulation of cell proliferation	3.71E-03
82	GO:0043085: positive regulation of catalytic activity	3.71E-03
83	GO:0006879: cellular iron ion homeostasis	3.71E-03
84	GO:0006790: sulfur compound metabolic process	4.06E-03
85	GO:0045037: protein import into chloroplast stroma	4.06E-03
86	GO:0009725: response to hormone	4.43E-03
87	GO:0009767: photosynthetic electron transport chain	4.43E-03
88	GO:0030048: actin filament-based movement	4.43E-03
89	GO:0034605: cellular response to heat	4.81E-03
90	GO:0006541: glutamine metabolic process	4.81E-03
91	GO:0019253: reductive pentose-phosphate cycle	4.81E-03
92	GO:0010207: photosystem II assembly	4.81E-03
93	GO:0007017: microtubule-based process	6.45E-03
94	GO:0010073: meristem maintenance	6.45E-03
95	GO:0006730: one-carbon metabolic process	7.34E-03
96	GO:0016226: iron-sulfur cluster assembly	7.34E-03
97	GO:0080092: regulation of pollen tube growth	7.34E-03
98	GO:0010227: floral organ abscission	7.79E-03
99	GO:0070417: cellular response to cold	8.74E-03
100	GO:0010118: stomatal movement	9.23E-03
101	GO:0000226: microtubule cytoskeleton organization	9.23E-03
102	GO:0008033: tRNA processing	9.23E-03
103	GO:0010051: xylem and phloem pattern formation	9.23E-03
104	GO:0010087: phloem or xylem histogenesis	9.23E-03
105	GO:0009958: positive gravitropism	9.73E-03
106	GO:0009416: response to light stimulus	1.01E-02
107	GO:0009646: response to absence of light	1.02E-02
108	GO:0009791: post-embryonic development	1.08E-02
109	GO:0009630: gravitropism	1.18E-02
110	GO:0000910: cytokinesis	1.40E-02
111	GO:0010027: thylakoid membrane organization	1.46E-02
112	GO:0010029: regulation of seed germination	1.52E-02
113	GO:0009816: defense response to bacterium, incompatible interaction	1.52E-02
114	GO:0030244: cellulose biosynthetic process	1.77E-02
115	GO:0018298: protein-chromophore linkage	1.77E-02
116	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.79E-02
117	GO:0000160: phosphorelay signal transduction system	1.83E-02
118	GO:0046777: protein autophosphorylation	1.86E-02
119	GO:0006811: ion transport	1.89E-02
120	GO:0009910: negative regulation of flower development	1.96E-02
121	GO:0009853: photorespiration	2.09E-02
122	GO:0006897: endocytosis	2.36E-02
123	GO:0016310: phosphorylation	2.36E-02
124	GO:0009640: photomorphogenesis	2.50E-02
125	GO:0008643: carbohydrate transport	2.65E-02
126	GO:0009965: leaf morphogenesis	2.72E-02
127	GO:0042538: hyperosmotic salinity response	2.94E-02
128	GO:0009664: plant-type cell wall organization	2.94E-02
129	GO:0006364: rRNA processing	3.09E-02
130	GO:0051603: proteolysis involved in cellular protein catabolic process	3.17E-02
131	GO:0006508: proteolysis	3.28E-02
132	GO:0006417: regulation of translation	3.33E-02
133	GO:0009909: regulation of flower development	3.33E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0046905: phytoene synthase activity	0.00E+00
4	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0001053: plastid sigma factor activity	3.52E-08
7	GO:0016987: sigma factor activity	3.52E-08
8	GO:0043015: gamma-tubulin binding	1.12E-05
9	GO:0046906: tetrapyrrole binding	1.14E-04
10	GO:0004071: aspartate-ammonia ligase activity	1.14E-04
11	GO:0004325: ferrochelatase activity	1.14E-04
12	GO:0051996: squalene synthase activity	1.14E-04
13	GO:0030941: chloroplast targeting sequence binding	1.14E-04
14	GO:0004654: polyribonucleotide nucleotidyltransferase activity	1.14E-04
15	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.65E-04
16	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.65E-04
17	GO:0035241: protein-arginine omega-N monomethyltransferase activity	2.65E-04
18	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	2.65E-04
19	GO:0008728: GTP diphosphokinase activity	2.65E-04
20	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.65E-04
21	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	2.65E-04
22	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	2.65E-04
23	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.24E-04
24	GO:0008469: histone-arginine N-methyltransferase activity	4.38E-04
25	GO:0004180: carboxypeptidase activity	4.38E-04
26	GO:0032947: protein complex scaffold	4.38E-04
27	GO:0004848: ureidoglycolate hydrolase activity	4.38E-04
28	GO:0003935: GTP cyclohydrolase II activity	4.38E-04
29	GO:0000254: C-4 methylsterol oxidase activity	6.29E-04
30	GO:0009882: blue light photoreceptor activity	6.29E-04
31	GO:0047627: adenylylsulfatase activity	6.29E-04
32	GO:0051861: glycolipid binding	8.35E-04
33	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.35E-04
34	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	8.35E-04
35	GO:0048038: quinone binding	9.17E-04
36	GO:0004518: nuclease activity	9.77E-04
37	GO:0008374: O-acyltransferase activity	1.05E-03
38	GO:0051011: microtubule minus-end binding	1.05E-03
39	GO:0030983: mismatched DNA binding	1.29E-03
40	GO:0015631: tubulin binding	1.54E-03
41	GO:0004559: alpha-mannosidase activity	1.54E-03
42	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.81E-03
43	GO:0019899: enzyme binding	1.81E-03
44	GO:0004222: metalloendopeptidase activity	1.86E-03
45	GO:0071949: FAD binding	2.70E-03
46	GO:0005381: iron ion transmembrane transporter activity	3.02E-03
47	GO:0004713: protein tyrosine kinase activity	3.36E-03
48	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.71E-03
49	GO:0000155: phosphorelay sensor kinase activity	4.43E-03
50	GO:0000175: 3'-5'-exoribonuclease activity	4.43E-03
51	GO:0031072: heat shock protein binding	4.43E-03
52	GO:0051536: iron-sulfur cluster binding	6.03E-03
53	GO:0004176: ATP-dependent peptidase activity	6.89E-03
54	GO:0010181: FMN binding	1.02E-02
55	GO:0004872: receptor activity	1.08E-02
56	GO:0003684: damaged DNA binding	1.29E-02
57	GO:0008237: metallopeptidase activity	1.35E-02
58	GO:0005200: structural constituent of cytoskeleton	1.35E-02
59	GO:0008236: serine-type peptidase activity	1.70E-02
60	GO:0005096: GTPase activator activity	1.83E-02
61	GO:0042803: protein homodimerization activity	2.18E-02
62	GO:0042393: histone binding	2.29E-02
63	GO:0005506: iron ion binding	2.41E-02
64	GO:0004185: serine-type carboxypeptidase activity	2.50E-02
65	GO:0051537: 2 iron, 2 sulfur cluster binding	2.65E-02
66	GO:0035091: phosphatidylinositol binding	2.65E-02
67	GO:0005198: structural molecule activity	2.72E-02
68	GO:0004519: endonuclease activity	2.79E-02
69	GO:0003777: microtubule motor activity	3.33E-02
70	GO:0016301: kinase activity	3.34E-02
71	GO:0016491: oxidoreductase activity	3.45E-02
72	GO:0022857: transmembrane transporter activity	3.81E-02
73	GO:0016887: ATPase activity	3.96E-02
74	GO:0051082: unfolded protein binding	3.98E-02
75	GO:0016746: transferase activity, transferring acyl groups	4.06E-02
76	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	2.20E-14
2	GO:0008274: gamma-tubulin ring complex	6.64E-07
3	GO:0009535: chloroplast thylakoid membrane	2.05E-06
4	GO:0031969: chloroplast membrane	4.70E-06
5	GO:0000923: equatorial microtubule organizing center	5.94E-06
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.08E-04
7	GO:0031021: interphase microtubule organizing center	1.14E-04
8	GO:0042651: thylakoid membrane	4.22E-04
9	GO:0005640: nuclear outer membrane	4.38E-04
10	GO:0000930: gamma-tubulin complex	8.35E-04
11	GO:0030286: dynein complex	8.35E-04
12	GO:0005828: kinetochore microtubule	8.35E-04
13	GO:0055035: plastid thylakoid membrane	1.05E-03
14	GO:0072686: mitotic spindle	1.05E-03
15	GO:0000776: kinetochore	1.05E-03
16	GO:0030140: trans-Golgi network transport vesicle	1.29E-03
17	GO:0031359: integral component of chloroplast outer membrane	1.81E-03
18	GO:0009536: plastid	2.07E-03
19	GO:0046930: pore complex	2.39E-03
20	GO:0000922: spindle pole	2.70E-03
21	GO:0016324: apical plasma membrane	3.36E-03
22	GO:0009574: preprophase band	4.43E-03
23	GO:0043234: protein complex	5.61E-03
24	GO:0005875: microtubule associated complex	5.61E-03
25	GO:0005623: cell	6.70E-03
26	GO:0009534: chloroplast thylakoid	1.28E-02
27	GO:0009570: chloroplast stroma	1.35E-02
28	GO:0009707: chloroplast outer membrane	1.77E-02
29	GO:0009941: chloroplast envelope	2.14E-02
30	GO:0005773: vacuole	2.62E-02
31	GO:0031966: mitochondrial membrane	2.94E-02
32	GO:0005635: nuclear envelope	3.25E-02
33	GO:0009706: chloroplast inner membrane	3.98E-02
34	GO:0010287: plastoglobule	4.49E-02
35	GO:0009524: phragmoplast	4.84E-02