Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34670

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090239: regulation of histone H4 acetylation0.00E+00
2GO:0000740: nuclear membrane fusion0.00E+00
3GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
4GO:0044843: cell cycle G1/S phase transition0.00E+00
5GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
6GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
7GO:0046487: glyoxylate metabolic process0.00E+00
8GO:0070918: production of small RNA involved in gene silencing by RNA0.00E+00
9GO:0007530: sex determination0.00E+00
10GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
11GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
12GO:0006412: translation5.98E-165
13GO:0042254: ribosome biogenesis7.65E-66
14GO:0000027: ribosomal large subunit assembly5.75E-13
15GO:0006626: protein targeting to mitochondrion1.68E-08
16GO:0000028: ribosomal small subunit assembly2.20E-08
17GO:0009967: positive regulation of signal transduction2.23E-05
18GO:0009955: adaxial/abaxial pattern specification3.04E-05
19GO:0009735: response to cytokinin4.23E-05
20GO:0000398: mRNA splicing, via spliceosome5.42E-05
21GO:1902626: assembly of large subunit precursor of preribosome7.23E-05
22GO:0002181: cytoplasmic translation7.23E-05
23GO:0006414: translational elongation7.27E-05
24GO:0000387: spliceosomal snRNP assembly1.61E-04
25GO:0009651: response to salt stress1.82E-04
26GO:0006820: anion transport3.03E-04
27GO:0046686: response to cadmium ion3.97E-04
28GO:0043248: proteasome assembly5.26E-04
29GO:0045040: protein import into mitochondrial outer membrane5.26E-04
30GO:0006511: ubiquitin-dependent protein catabolic process5.87E-04
31GO:0051603: proteolysis involved in cellular protein catabolic process6.27E-04
32GO:0030150: protein import into mitochondrial matrix6.55E-04
33GO:0000245: spliceosomal complex assembly6.96E-04
34GO:0006458: 'de novo' protein folding6.96E-04
35GO:0015801: aromatic amino acid transport7.25E-04
36GO:0017198: N-terminal peptidyl-serine acetylation7.25E-04
37GO:0030490: maturation of SSU-rRNA7.25E-04
38GO:2001006: regulation of cellulose biosynthetic process7.25E-04
39GO:0006434: seryl-tRNA aminoacylation7.25E-04
40GO:0000494: box C/D snoRNA 3'-end processing7.25E-04
41GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.25E-04
42GO:0018002: N-terminal peptidyl-glutamic acid acetylation7.25E-04
43GO:0032365: intracellular lipid transport7.25E-04
44GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.25E-04
45GO:0006407: rRNA export from nucleus7.25E-04
46GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process7.25E-04
47GO:0006475: internal protein amino acid acetylation7.25E-04
48GO:1990258: histone glutamine methylation7.25E-04
49GO:0071668: plant-type cell wall assembly1.56E-03
50GO:2000072: regulation of defense response to fungus, incompatible interaction1.56E-03
51GO:0045901: positive regulation of translational elongation1.56E-03
52GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.56E-03
53GO:0045041: protein import into mitochondrial intermembrane space1.56E-03
54GO:0048569: post-embryonic animal organ development1.56E-03
55GO:0043981: histone H4-K5 acetylation1.56E-03
56GO:0055129: L-proline biosynthetic process1.56E-03
57GO:0006452: translational frameshifting1.56E-03
58GO:0010198: synergid death1.56E-03
59GO:0015786: UDP-glucose transport1.56E-03
60GO:0051788: response to misfolded protein1.56E-03
61GO:0006435: threonyl-tRNA aminoacylation1.56E-03
62GO:0045905: positive regulation of translational termination1.56E-03
63GO:0098656: anion transmembrane transport1.61E-03
64GO:0009245: lipid A biosynthetic process1.61E-03
65GO:0045793: positive regulation of cell size2.58E-03
66GO:0015783: GDP-fucose transport2.58E-03
67GO:0034227: tRNA thio-modification2.58E-03
68GO:0010476: gibberellin mediated signaling pathway2.58E-03
69GO:0042256: mature ribosome assembly2.58E-03
70GO:0090506: axillary shoot meristem initiation2.58E-03
71GO:0010452: histone H3-K36 methylation2.58E-03
72GO:0046168: glycerol-3-phosphate catabolic process2.58E-03
73GO:0009150: purine ribonucleotide metabolic process2.58E-03
74GO:1904278: positive regulation of wax biosynthetic process2.58E-03
75GO:0009793: embryo development ending in seed dormancy3.46E-03
76GO:0046513: ceramide biosynthetic process3.76E-03
77GO:0032877: positive regulation of DNA endoreduplication3.76E-03
78GO:0006166: purine ribonucleoside salvage3.76E-03
79GO:0070301: cellular response to hydrogen peroxide3.76E-03
80GO:0051085: chaperone mediated protein folding requiring cofactor3.76E-03
81GO:0046653: tetrahydrofolate metabolic process3.76E-03
82GO:0006241: CTP biosynthetic process3.76E-03
83GO:0072334: UDP-galactose transmembrane transport3.76E-03
84GO:0009647: skotomorphogenesis3.76E-03
85GO:0006072: glycerol-3-phosphate metabolic process3.76E-03
86GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.76E-03
87GO:0006165: nucleoside diphosphate phosphorylation3.76E-03
88GO:0006168: adenine salvage3.76E-03
89GO:0006228: UTP biosynthetic process3.76E-03
90GO:0006164: purine nucleotide biosynthetic process3.76E-03
91GO:0009558: embryo sac cellularization3.76E-03
92GO:0051781: positive regulation of cell division5.08E-03
93GO:0042274: ribosomal small subunit biogenesis5.08E-03
94GO:0010387: COP9 signalosome assembly5.08E-03
95GO:0006183: GTP biosynthetic process5.08E-03
96GO:0010363: regulation of plant-type hypersensitive response5.08E-03
97GO:2000032: regulation of secondary shoot formation5.08E-03
98GO:0006289: nucleotide-excision repair5.32E-03
99GO:0061077: chaperone-mediated protein folding6.47E-03
100GO:1902183: regulation of shoot apical meristem development6.54E-03
101GO:0044209: AMP salvage6.54E-03
102GO:0071493: cellular response to UV-B6.54E-03
103GO:0031167: rRNA methylation6.54E-03
104GO:0019408: dolichol biosynthetic process6.54E-03
105GO:0071215: cellular response to abscisic acid stimulus7.75E-03
106GO:0006561: proline biosynthetic process8.12E-03
107GO:0051568: histone H3-K4 methylation8.12E-03
108GO:0000470: maturation of LSU-rRNA8.12E-03
109GO:0000741: karyogamy8.12E-03
110GO:0008283: cell proliferation8.81E-03
111GO:0009554: megasporogenesis9.83E-03
112GO:0016444: somatic cell DNA recombination9.83E-03
113GO:1901001: negative regulation of response to salt stress9.83E-03
114GO:0000911: cytokinesis by cell plate formation9.83E-03
115GO:0042026: protein refolding9.83E-03
116GO:0000413: protein peptidyl-prolyl isomerization9.92E-03
117GO:0006413: translational initiation1.00E-02
118GO:0009965: leaf morphogenesis1.02E-02
119GO:0010197: polar nucleus fusion1.07E-02
120GO:0032880: regulation of protein localization1.17E-02
121GO:0048528: post-embryonic root development1.17E-02
122GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.17E-02
123GO:0000338: protein deneddylation1.17E-02
124GO:0009645: response to low light intensity stimulus1.17E-02
125GO:0009396: folic acid-containing compound biosynthetic process1.17E-02
126GO:0010183: pollen tube guidance1.24E-02
127GO:0006364: rRNA processing1.29E-02
128GO:0006635: fatty acid beta-oxidation1.33E-02
129GO:0050821: protein stabilization1.36E-02
130GO:0031540: regulation of anthocyanin biosynthetic process1.36E-02
131GO:0009690: cytokinin metabolic process1.36E-02
132GO:0009908: flower development1.47E-02
133GO:0044030: regulation of DNA methylation1.56E-02
134GO:0030968: endoplasmic reticulum unfolded protein response1.56E-02
135GO:0009808: lignin metabolic process1.56E-02
136GO:0001558: regulation of cell growth1.56E-02
137GO:0001510: RNA methylation1.56E-02
138GO:0006189: 'de novo' IMP biosynthetic process1.78E-02
139GO:0048589: developmental growth1.78E-02
140GO:0009060: aerobic respiration1.78E-02
141GO:0015780: nucleotide-sugar transport1.78E-02
142GO:0007338: single fertilization1.78E-02
143GO:0048507: meristem development1.78E-02
144GO:0035999: tetrahydrofolate interconversion2.00E-02
145GO:0042761: very long-chain fatty acid biosynthetic process2.00E-02
146GO:0015031: protein transport2.03E-02
147GO:0045036: protein targeting to chloroplast2.24E-02
148GO:0016441: posttranscriptional gene silencing2.24E-02
149GO:0009409: response to cold2.33E-02
150GO:0010015: root morphogenesis2.48E-02
151GO:0006913: nucleocytoplasmic transport2.48E-02
152GO:0015770: sucrose transport2.48E-02
153GO:0016925: protein sumoylation2.73E-02
154GO:0006790: sulfur compound metabolic process2.73E-02
155GO:0009845: seed germination2.97E-02
156GO:2000028: regulation of photoperiodism, flowering3.00E-02
157GO:0010628: positive regulation of gene expression3.00E-02
158GO:0010102: lateral root morphogenesis3.00E-02
159GO:0000724: double-strand break repair via homologous recombination3.06E-02
160GO:0048467: gynoecium development3.27E-02
161GO:0006446: regulation of translational initiation3.27E-02
162GO:0006487: protein N-linked glycosylation4.12E-02
163GO:0009116: nucleoside metabolic process4.12E-02
164GO:0006406: mRNA export from nucleus4.12E-02
165GO:0051302: regulation of cell division4.42E-02
166GO:0009644: response to high light intensity4.45E-02
167GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process4.61E-02
168GO:0051260: protein homooligomerization4.73E-02
169GO:0010431: seed maturation4.73E-02
170GO:0006334: nucleosome assembly4.73E-02
171GO:0006306: DNA methylation4.73E-02
172GO:0003333: amino acid transmembrane transport4.73E-02
173GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.97E-02
RankGO TermAdjusted P value
1GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
2GO:0030272: 5-formyltetrahydrofolate cyclo-ligase activity0.00E+00
3GO:0004735: pyrroline-5-carboxylate reductase activity0.00E+00
4GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
5GO:0003735: structural constituent of ribosome2.06E-209
6GO:0003729: mRNA binding5.78E-40
7GO:0019843: rRNA binding3.49E-18
8GO:0004298: threonine-type endopeptidase activity1.65E-07
9GO:0005078: MAP-kinase scaffold activity2.23E-05
10GO:0003746: translation elongation factor activity2.38E-05
11GO:0008233: peptidase activity3.81E-05
12GO:0015288: porin activity6.75E-05
13GO:0008308: voltage-gated anion channel activity9.35E-05
14GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.26E-04
15GO:0008097: 5S rRNA binding1.50E-04
16GO:0044183: protein binding involved in protein folding2.50E-04
17GO:0031177: phosphopantetheine binding5.26E-04
18GO:0003723: RNA binding6.78E-04
19GO:0000035: acyl binding6.96E-04
20GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity7.25E-04
21GO:1990259: histone-glutamine methyltransferase activity7.25E-04
22GO:0035614: snRNA stem-loop binding7.25E-04
23GO:0016817: hydrolase activity, acting on acid anhydrides7.25E-04
24GO:0000824: inositol tetrakisphosphate 3-kinase activity7.25E-04
25GO:1990189: peptide-serine-N-acetyltransferase activity7.25E-04
26GO:0047326: inositol tetrakisphosphate 5-kinase activity7.25E-04
27GO:0004828: serine-tRNA ligase activity7.25E-04
28GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity7.25E-04
29GO:0005080: protein kinase C binding7.25E-04
30GO:1990190: peptide-glutamate-N-acetyltransferase activity7.25E-04
31GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.10E-03
32GO:0043022: ribosome binding1.10E-03
33GO:0030619: U1 snRNA binding1.56E-03
34GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.56E-03
35GO:0004634: phosphopyruvate hydratase activity1.56E-03
36GO:0050291: sphingosine N-acyltransferase activity1.56E-03
37GO:0015173: aromatic amino acid transmembrane transporter activity1.56E-03
38GO:0004750: ribulose-phosphate 3-epimerase activity1.56E-03
39GO:1990585: hydroxyproline O-arabinosyltransferase activity1.56E-03
40GO:0032934: sterol binding1.56E-03
41GO:0004829: threonine-tRNA ligase activity1.56E-03
42GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.56E-03
43GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.56E-03
44GO:0035241: protein-arginine omega-N monomethyltransferase activity1.56E-03
45GO:0001055: RNA polymerase II activity1.91E-03
46GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.58E-03
47GO:0005457: GDP-fucose transmembrane transporter activity2.58E-03
48GO:0070180: large ribosomal subunit rRNA binding2.58E-03
49GO:0008469: histone-arginine N-methyltransferase activity2.58E-03
50GO:0015462: ATPase-coupled protein transmembrane transporter activity2.58E-03
51GO:0032947: protein complex scaffold2.58E-03
52GO:0008649: rRNA methyltransferase activity2.58E-03
53GO:0070181: small ribosomal subunit rRNA binding2.58E-03
54GO:0001054: RNA polymerase I activity2.59E-03
55GO:0001056: RNA polymerase III activity2.97E-03
56GO:0015266: protein channel activity3.38E-03
57GO:0047627: adenylylsulfatase activity3.76E-03
58GO:0003999: adenine phosphoribosyltransferase activity3.76E-03
59GO:0005460: UDP-glucose transmembrane transporter activity3.76E-03
60GO:0004550: nucleoside diphosphate kinase activity3.76E-03
61GO:0051082: unfolded protein binding4.83E-03
62GO:0010011: auxin binding5.08E-03
63GO:0070628: proteasome binding5.08E-03
64GO:0031386: protein tag6.54E-03
65GO:0005459: UDP-galactose transmembrane transporter activity6.54E-03
66GO:0004888: transmembrane signaling receptor activity6.54E-03
67GO:0045547: dehydrodolichyl diphosphate synthase activity6.54E-03
68GO:0005275: amine transmembrane transporter activity6.54E-03
69GO:0031593: polyubiquitin binding8.12E-03
70GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity8.12E-03
71GO:0051920: peroxiredoxin activity9.83E-03
72GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.07E-02
73GO:0030515: snoRNA binding1.17E-02
74GO:0005338: nucleotide-sugar transmembrane transporter activity1.17E-02
75GO:0008235: metalloexopeptidase activity1.17E-02
76GO:0042162: telomeric DNA binding1.17E-02
77GO:0008121: ubiquinol-cytochrome-c reductase activity1.17E-02
78GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.29E-02
79GO:0016209: antioxidant activity1.36E-02
80GO:0000989: transcription factor activity, transcription factor binding1.78E-02
81GO:0008515: sucrose transmembrane transporter activity2.48E-02
82GO:0046961: proton-transporting ATPase activity, rotational mechanism2.48E-02
83GO:0008794: arsenate reductase (glutaredoxin) activity2.48E-02
84GO:0031072: heat shock protein binding3.00E-02
85GO:0051119: sugar transmembrane transporter activity3.54E-02
86GO:0043130: ubiquitin binding4.12E-02
87GO:0051087: chaperone binding4.42E-02
88GO:0000166: nucleotide binding4.69E-02
89GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.73E-02
90GO:0003743: translation initiation factor activity4.85E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0005675: holo TFIIH complex0.00E+00
3GO:0005832: chaperonin-containing T-complex0.00E+00
4GO:0005840: ribosome1.31E-149
5GO:0022626: cytosolic ribosome1.33E-135
6GO:0022625: cytosolic large ribosomal subunit1.51E-125
7GO:0022627: cytosolic small ribosomal subunit2.46E-86
8GO:0005829: cytosol6.26E-51
9GO:0005737: cytoplasm2.19E-45
10GO:0005730: nucleolus2.34E-42
11GO:0009506: plasmodesma9.09E-25
12GO:0015934: large ribosomal subunit1.04E-21
13GO:0005774: vacuolar membrane7.39E-18
14GO:0015935: small ribosomal subunit1.70E-12
15GO:0016020: membrane1.73E-12
16GO:0005773: vacuole2.54E-11
17GO:0000502: proteasome complex3.89E-09
18GO:0005618: cell wall1.62E-08
19GO:0009507: chloroplast3.97E-08
20GO:0005839: proteasome core complex1.65E-07
21GO:0005853: eukaryotic translation elongation factor 1 complex3.44E-07
22GO:0005742: mitochondrial outer membrane translocase complex2.76E-06
23GO:0005741: mitochondrial outer membrane4.78E-06
24GO:0005732: small nucleolar ribonucleoprotein complex5.33E-06
25GO:0005886: plasma membrane2.48E-05
26GO:0034719: SMN-Sm protein complex7.23E-05
27GO:0046930: pore complex9.35E-05
28GO:0005685: U1 snRNP1.24E-04
29GO:0071011: precatalytic spliceosome1.61E-04
30GO:0071013: catalytic step 2 spliceosome2.50E-04
31GO:0005682: U5 snRNP2.53E-04
32GO:0005665: DNA-directed RNA polymerase II, core complex3.03E-04
33GO:0019013: viral nucleocapsid3.62E-04
34GO:0005687: U4 snRNP3.78E-04
35GO:0097526: spliceosomal tri-snRNP complex3.78E-04
36GO:0000419: DNA-directed RNA polymerase V complex5.72E-04
37GO:0005689: U12-type spliceosomal complex6.96E-04
38GO:0030686: 90S preribosome7.25E-04
39GO:0071010: prespliceosome1.56E-03
40GO:0035145: exon-exon junction complex1.56E-03
41GO:0031415: NatA complex1.56E-03
42GO:0000015: phosphopyruvate hydratase complex1.56E-03
43GO:0005697: telomerase holoenzyme complex1.56E-03
44GO:0005736: DNA-directed RNA polymerase I complex1.61E-03
45GO:0005666: DNA-directed RNA polymerase III complex1.91E-03
46GO:0015030: Cajal body1.91E-03
47GO:0000418: DNA-directed RNA polymerase IV complex2.24E-03
48GO:0005686: U2 snRNP2.24E-03
49GO:0000439: core TFIIH complex2.58E-03
50GO:0034715: pICln-Sm protein complex2.58E-03
51GO:0008541: proteasome regulatory particle, lid subcomplex2.59E-03
52GO:0005681: spliceosomal complex3.63E-03
53GO:0009331: glycerol-3-phosphate dehydrogenase complex3.76E-03
54GO:0033180: proton-transporting V-type ATPase, V1 domain3.76E-03
55GO:1990726: Lsm1-7-Pat1 complex3.76E-03
56GO:0005834: heterotrimeric G-protein complex4.00E-03
57GO:0016593: Cdc73/Paf1 complex5.08E-03
58GO:0005758: mitochondrial intermembrane space5.32E-03
59GO:0070469: respiratory chain5.88E-03
60GO:0000243: commitment complex8.12E-03
61GO:0031428: box C/D snoRNP complex8.12E-03
62GO:0005744: mitochondrial inner membrane presequence translocase complex8.44E-03
63GO:0016272: prefoldin complex9.83E-03
64GO:0005762: mitochondrial large ribosomal subunit9.83E-03
65GO:0005801: cis-Golgi network9.83E-03
66GO:0071004: U2-type prespliceosome1.36E-02
67GO:0005688: U6 snRNP1.36E-02
68GO:0019773: proteasome core complex, alpha-subunit complex1.56E-02
69GO:0046540: U4/U6 x U5 tri-snRNP complex1.56E-02
70GO:0005743: mitochondrial inner membrane1.59E-02
71GO:0008180: COP9 signalosome1.78E-02
72GO:0030529: intracellular ribonucleoprotein complex1.93E-02
73GO:0016604: nuclear body2.00E-02
74GO:0005740: mitochondrial envelope2.24E-02
75GO:0005852: eukaryotic translation initiation factor 3 complex2.48E-02
76GO:0048471: perinuclear region of cytoplasm2.48E-02
77GO:0009707: chloroplast outer membrane2.52E-02
78GO:0005654: nucleoplasm2.60E-02
79GO:0032040: small-subunit processome2.73E-02
80GO:0031307: integral component of mitochondrial outer membrane2.73E-02
81GO:0009508: plastid chromosome3.00E-02
82GO:0005750: mitochondrial respiratory chain complex III3.27E-02
83GO:0005759: mitochondrial matrix3.58E-02
84GO:0005783: endoplasmic reticulum4.53E-02
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Gene type



Gene DE type