co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
2	GO:0060416: response to growth hormone	0.00E+00
3	GO:0045730: respiratory burst	0.00E+00
4	GO:0009268: response to pH	0.00E+00
5	GO:2001143: N-methylnicotinate transport	0.00E+00
6	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
7	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
8	GO:0097237: cellular response to toxic substance	0.00E+00
9	GO:2001142: nicotinate transport	0.00E+00
10	GO:0009611: response to wounding	5.77E-09
11	GO:0045227: capsule polysaccharide biosynthetic process	5.24E-08
12	GO:0033358: UDP-L-arabinose biosynthetic process	5.24E-08
13	GO:0009699: phenylpropanoid biosynthetic process	1.56E-06
14	GO:0015706: nitrate transport	6.74E-06
15	GO:0002679: respiratory burst involved in defense response	7.85E-06
16	GO:0009225: nucleotide-sugar metabolic process	1.29E-05
17	GO:0006012: galactose metabolic process	3.42E-05
18	GO:0009306: protein secretion	3.92E-05
19	GO:0010200: response to chitin	1.05E-04
20	GO:0046244: salicylic acid catabolic process	1.33E-04
21	GO:0003400: regulation of COPII vesicle coating	1.33E-04
22	GO:0080157: regulation of plant-type cell wall organization or biogenesis	1.33E-04
23	GO:0006083: acetate metabolic process	1.33E-04
24	GO:0019567: arabinose biosynthetic process	1.33E-04
25	GO:0051865: protein autoubiquitination	1.37E-04
26	GO:0042128: nitrate assimilation	1.59E-04
27	GO:0055085: transmembrane transport	1.92E-04
28	GO:0009813: flavonoid biosynthetic process	2.12E-04
29	GO:0016036: cellular response to phosphate starvation	2.19E-04
30	GO:1903507: negative regulation of nucleic acid-templated transcription	2.29E-04
31	GO:0000266: mitochondrial fission	2.64E-04
32	GO:0015865: purine nucleotide transport	3.07E-04
33	GO:0080148: negative regulation of response to water deprivation	3.07E-04
34	GO:0046939: nucleotide phosphorylation	3.07E-04
35	GO:0009805: coumarin biosynthetic process	3.07E-04
36	GO:0010372: positive regulation of gibberellin biosynthetic process	3.07E-04
37	GO:0009812: flavonoid metabolic process	3.07E-04
38	GO:0006556: S-adenosylmethionine biosynthetic process	5.06E-04
39	GO:0006065: UDP-glucuronate biosynthetic process	5.06E-04
40	GO:0052546: cell wall pectin metabolic process	5.06E-04
41	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	5.06E-04
42	GO:2000022: regulation of jasmonic acid mediated signaling pathway	6.25E-04
43	GO:0080167: response to karrikin	6.85E-04
44	GO:0009800: cinnamic acid biosynthetic process	7.24E-04
45	GO:0043207: response to external biotic stimulus	7.24E-04
46	GO:0046902: regulation of mitochondrial membrane permeability	7.24E-04
47	GO:0006817: phosphate ion transport	7.38E-04
48	GO:0006749: glutathione metabolic process	9.59E-04
49	GO:0002229: defense response to oomycetes	1.13E-03
50	GO:0032957: inositol trisphosphate metabolic process	1.21E-03
51	GO:0006468: protein phosphorylation	1.35E-03
52	GO:0009753: response to jasmonic acid	1.36E-03
53	GO:0006559: L-phenylalanine catabolic process	1.49E-03
54	GO:0046855: inositol phosphate dephosphorylation	1.49E-03
55	GO:1900425: negative regulation of defense response to bacterium	1.49E-03
56	GO:0033365: protein localization to organelle	1.49E-03
57	GO:0016579: protein deubiquitination	1.52E-03
58	GO:0006952: defense response	1.75E-03
59	GO:0008219: cell death	2.09E-03
60	GO:0098869: cellular oxidant detoxification	2.09E-03
61	GO:0009407: toxin catabolic process	2.30E-03
62	GO:0009819: drought recovery	2.42E-03
63	GO:0006402: mRNA catabolic process	2.42E-03
64	GO:0006605: protein targeting	2.42E-03
65	GO:0009704: de-etiolation	2.42E-03
66	GO:0045010: actin nucleation	2.42E-03
67	GO:0010262: somatic embryogenesis	2.77E-03
68	GO:0009808: lignin metabolic process	2.77E-03
69	GO:0009932: cell tip growth	2.77E-03
70	GO:0006839: mitochondrial transport	3.00E-03
71	GO:0090333: regulation of stomatal closure	3.13E-03
72	GO:0010112: regulation of systemic acquired resistance	3.13E-03
73	GO:0009835: fruit ripening	3.13E-03
74	GO:0009636: response to toxic substance	3.81E-03
75	GO:0006032: chitin catabolic process	3.89E-03
76	GO:0010215: cellulose microfibril organization	3.89E-03
77	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.08E-03
78	GO:0015770: sucrose transport	4.30E-03
79	GO:0000272: polysaccharide catabolic process	4.30E-03
80	GO:0046856: phosphatidylinositol dephosphorylation	4.30E-03
81	GO:0009809: lignin biosynthetic process	4.56E-03
82	GO:0010152: pollen maturation	4.72E-03
83	GO:0046274: lignin catabolic process	5.15E-03
84	GO:0018107: peptidyl-threonine phosphorylation	5.15E-03
85	GO:0009718: anthocyanin-containing compound biosynthetic process	5.15E-03
86	GO:0034605: cellular response to heat	5.60E-03
87	GO:0010167: response to nitrate	6.06E-03
88	GO:0009901: anther dehiscence	6.06E-03
89	GO:0005985: sucrose metabolic process	6.06E-03
90	GO:0090351: seedling development	6.06E-03
91	GO:0016998: cell wall macromolecule catabolic process	8.02E-03
92	GO:0048511: rhythmic process	8.02E-03
93	GO:0098542: defense response to other organism	8.02E-03
94	GO:0009414: response to water deprivation	8.23E-03
95	GO:0006730: one-carbon metabolic process	8.55E-03
96	GO:0007005: mitochondrion organization	8.55E-03
97	GO:0009845: seed germination	8.79E-03
98	GO:0009693: ethylene biosynthetic process	9.08E-03
99	GO:0048868: pollen tube development	1.13E-02
100	GO:0071554: cell wall organization or biogenesis	1.32E-02
101	GO:0009555: pollen development	1.33E-02
102	GO:0009617: response to bacterium	1.34E-02
103	GO:0031047: gene silencing by RNA	1.38E-02
104	GO:0050832: defense response to fungus	1.43E-02
105	GO:0001666: response to hypoxia	1.71E-02
106	GO:0009651: response to salt stress	1.76E-02
107	GO:0009607: response to biotic stimulus	1.78E-02
108	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.78E-02
109	GO:0006888: ER to Golgi vesicle-mediated transport	1.92E-02
110	GO:0016049: cell growth	1.99E-02
111	GO:0009723: response to ethylene	2.02E-02
112	GO:0009817: defense response to fungus, incompatible interaction	2.06E-02
113	GO:0009832: plant-type cell wall biogenesis	2.14E-02
114	GO:0048527: lateral root development	2.29E-02
115	GO:0007568: aging	2.29E-02
116	GO:0046777: protein autophosphorylation	2.31E-02
117	GO:0009867: jasmonic acid mediated signaling pathway	2.44E-02
118	GO:0006886: intracellular protein transport	2.67E-02
119	GO:0006631: fatty acid metabolic process	2.76E-02
120	GO:0042742: defense response to bacterium	3.23E-02
121	GO:0006979: response to oxidative stress	3.26E-02
122	GO:0031347: regulation of defense response	3.35E-02
123	GO:0009664: plant-type cell wall organization	3.44E-02
124	GO:0010224: response to UV-B	3.71E-02
125	GO:0055114: oxidation-reduction process	4.08E-02
126	GO:0009873: ethylene-activated signaling pathway	4.11E-02
127	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.21E-02
128	GO:0009626: plant-type hypersensitive response	4.26E-02
129	GO:0016567: protein ubiquitination	4.44E-02
130	GO:0018105: peptidyl-serine phosphorylation	4.74E-02
131	GO:0009742: brassinosteroid mediated signaling pathway	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0005522: profilin binding	0.00E+00
2	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
3	GO:0046409: p-coumarate 3-hydroxylase activity	0.00E+00
4	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
5	GO:0090416: nicotinate transporter activity	0.00E+00
6	GO:0050373: UDP-arabinose 4-epimerase activity	5.24E-08
7	GO:0003978: UDP-glucose 4-epimerase activity	4.19E-07
8	GO:0015112: nitrate transmembrane transporter activity	3.03E-06
9	GO:0005090: Sar guanyl-nucleotide exchange factor activity	1.33E-04
10	GO:0031219: levanase activity	1.33E-04
11	GO:0003987: acetate-CoA ligase activity	1.33E-04
12	GO:0051669: fructan beta-fructosidase activity	1.33E-04
13	GO:0016301: kinase activity	2.11E-04
14	GO:0003714: transcription corepressor activity	4.74E-04
15	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	5.06E-04
16	GO:0033897: ribonuclease T2 activity	5.06E-04
17	GO:0003979: UDP-glucose 6-dehydrogenase activity	5.06E-04
18	GO:0004478: methionine adenosyltransferase activity	5.06E-04
19	GO:0045548: phenylalanine ammonia-lyase activity	5.06E-04
20	GO:0004445: inositol-polyphosphate 5-phosphatase activity	7.24E-04
21	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	7.24E-04
22	GO:0019201: nucleotide kinase activity	7.24E-04
23	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.13E-03
24	GO:0047631: ADP-ribose diphosphatase activity	1.21E-03
25	GO:0005471: ATP:ADP antiporter activity	1.21E-03
26	GO:0004674: protein serine/threonine kinase activity	1.32E-03
27	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.49E-03
28	GO:0016208: AMP binding	1.49E-03
29	GO:0051213: dioxygenase activity	1.61E-03
30	GO:0004012: phospholipid-translocating ATPase activity	1.78E-03
31	GO:0004017: adenylate kinase activity	1.78E-03
32	GO:0051020: GTPase binding	1.78E-03
33	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.09E-03
34	GO:0008506: sucrose:proton symporter activity	2.09E-03
35	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.41E-03
36	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	2.42E-03
37	GO:0016207: 4-coumarate-CoA ligase activity	3.13E-03
38	GO:0004364: glutathione transferase activity	3.26E-03
39	GO:0004568: chitinase activity	3.89E-03
40	GO:0004672: protein kinase activity	4.19E-03
41	GO:0008515: sucrose transmembrane transporter activity	4.30E-03
42	GO:0004521: endoribonuclease activity	4.72E-03
43	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.72E-03
44	GO:0005524: ATP binding	4.94E-03
45	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.15E-03
46	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.60E-03
47	GO:0008061: chitin binding	6.06E-03
48	GO:0004867: serine-type endopeptidase inhibitor activity	6.06E-03
49	GO:0001046: core promoter sequence-specific DNA binding	7.01E-03
50	GO:0019706: protein-cysteine S-palmitoyltransferase activity	8.02E-03
51	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	8.02E-03
52	GO:0004540: ribonuclease activity	8.02E-03
53	GO:0022891: substrate-specific transmembrane transporter activity	9.08E-03
54	GO:0015144: carbohydrate transmembrane transporter activity	9.72E-03
55	GO:0005351: sugar:proton symporter activity	1.10E-02
56	GO:0043565: sequence-specific DNA binding	1.28E-02
57	GO:0004518: nuclease activity	1.38E-02
58	GO:0004842: ubiquitin-protein transferase activity	1.39E-02
59	GO:0042802: identical protein binding	1.43E-02
60	GO:0051015: actin filament binding	1.44E-02
61	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.57E-02
62	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.57E-02
63	GO:0016413: O-acetyltransferase activity	1.64E-02
64	GO:0030246: carbohydrate binding	1.93E-02
65	GO:0050660: flavin adenine dinucleotide binding	2.02E-02
66	GO:0005507: copper ion binding	2.08E-02
67	GO:0005096: GTPase activator activity	2.14E-02
68	GO:0004497: monooxygenase activity	2.16E-02
69	GO:0005516: calmodulin binding	2.23E-02
70	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.59E-02
71	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.88E-02
72	GO:0015293: symporter activity	3.18E-02
73	GO:0051287: NAD binding	3.35E-02
74	GO:0009055: electron carrier activity	3.42E-02
75	GO:0003824: catalytic activity	3.62E-02
76	GO:0016298: lipase activity	3.71E-02
77	GO:0016874: ligase activity	4.45E-02
78	GO:0022857: transmembrane transporter activity	4.45E-02
79	GO:0003779: actin binding	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.67E-08
2	GO:0032580: Golgi cisterna membrane	1.05E-04
3	GO:0016442: RISC complex	1.33E-04
4	GO:0005911: cell-cell junction	1.33E-04
5	GO:0016021: integral component of membrane	1.42E-04
6	GO:0005618: cell wall	2.26E-04
7	GO:0005802: trans-Golgi network	1.41E-03
8	GO:0005768: endosome	1.77E-03
9	GO:0005794: Golgi apparatus	1.87E-03
10	GO:0009514: glyoxysome	2.77E-03
11	GO:0010494: cytoplasmic stress granule	3.13E-03
12	GO:0090406: pollen tube	3.40E-03
13	GO:0005740: mitochondrial envelope	3.89E-03
14	GO:0090404: pollen tube tip	4.30E-03
15	GO:0048471: perinuclear region of cytoplasm	4.30E-03
16	GO:0005938: cell cortex	5.15E-03
17	GO:0005743: mitochondrial inner membrane	5.85E-03
18	GO:0005774: vacuolar membrane	6.01E-03
19	GO:0030176: integral component of endoplasmic reticulum membrane	6.06E-03
20	GO:0005741: mitochondrial outer membrane	8.02E-03
21	GO:0009524: phragmoplast	8.56E-03
22	GO:0009505: plant-type cell wall	1.20E-02
23	GO:0009504: cell plate	1.25E-02
24	GO:0046658: anchored component of plasma membrane	1.49E-02
25	GO:0000932: P-body	1.71E-02
26	GO:0031902: late endosome membrane	2.76E-02
27	GO:0005635: nuclear envelope	3.80E-02