Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34220

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0061157: mRNA destabilization0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0090706: specification of plant organ position0.00E+00
5GO:0045014: negative regulation of transcription by glucose0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0009715: chalcone biosynthetic process0.00E+00
8GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
9GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0080127: fruit septum development0.00E+00
12GO:0007172: signal complex assembly0.00E+00
13GO:0006114: glycerol biosynthetic process0.00E+00
14GO:0042493: response to drug0.00E+00
15GO:0015727: lactate transport0.00E+00
16GO:0006399: tRNA metabolic process0.00E+00
17GO:0015979: photosynthesis1.67E-08
18GO:0042549: photosystem II stabilization8.86E-06
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.29E-05
20GO:0009773: photosynthetic electron transport in photosystem I1.37E-04
21GO:0010158: abaxial cell fate specification2.44E-04
22GO:0010027: thylakoid membrane organization2.79E-04
23GO:1901259: chloroplast rRNA processing4.58E-04
24GO:0034337: RNA folding5.46E-04
25GO:0010450: inflorescence meristem growth5.46E-04
26GO:0000476: maturation of 4.5S rRNA5.46E-04
27GO:0000967: rRNA 5'-end processing5.46E-04
28GO:0010493: Lewis a epitope biosynthetic process5.46E-04
29GO:0043953: protein transport by the Tat complex5.46E-04
30GO:0000481: maturation of 5S rRNA5.46E-04
31GO:0042371: vitamin K biosynthetic process5.46E-04
32GO:0065002: intracellular protein transmembrane transport5.46E-04
33GO:0043686: co-translational protein modification5.46E-04
34GO:0043007: maintenance of rDNA5.46E-04
35GO:0010103: stomatal complex morphogenesis5.86E-04
36GO:0030091: protein repair7.29E-04
37GO:0010114: response to red light9.20E-04
38GO:0048507: meristem development1.06E-03
39GO:0006521: regulation of cellular amino acid metabolic process1.17E-03
40GO:0080181: lateral root branching1.17E-03
41GO:0034470: ncRNA processing1.17E-03
42GO:0035304: regulation of protein dephosphorylation1.17E-03
43GO:0006741: NADP biosynthetic process1.17E-03
44GO:0009629: response to gravity1.17E-03
45GO:0006432: phenylalanyl-tRNA aminoacylation1.17E-03
46GO:0018026: peptidyl-lysine monomethylation1.17E-03
47GO:0010205: photoinhibition1.25E-03
48GO:0019684: photosynthesis, light reaction1.69E-03
49GO:0019674: NAD metabolic process1.93E-03
50GO:0048281: inflorescence morphogenesis1.93E-03
51GO:0006954: inflammatory response1.93E-03
52GO:0009405: pathogenesis1.93E-03
53GO:0005977: glycogen metabolic process1.93E-03
54GO:0045165: cell fate commitment1.93E-03
55GO:0010582: floral meristem determinacy1.94E-03
56GO:0006094: gluconeogenesis2.20E-03
57GO:2000012: regulation of auxin polar transport2.20E-03
58GO:0010628: positive regulation of gene expression2.20E-03
59GO:0010207: photosystem II assembly2.48E-03
60GO:0016311: dephosphorylation2.53E-03
61GO:0018298: protein-chromophore linkage2.70E-03
62GO:0006020: inositol metabolic process2.80E-03
63GO:0007231: osmosensory signaling pathway2.80E-03
64GO:0010239: chloroplast mRNA processing2.80E-03
65GO:0009650: UV protection2.80E-03
66GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.80E-03
67GO:0046739: transport of virus in multicellular host2.80E-03
68GO:1901332: negative regulation of lateral root development2.80E-03
69GO:0010148: transpiration2.80E-03
70GO:2001141: regulation of RNA biosynthetic process2.80E-03
71GO:0019363: pyridine nucleotide biosynthetic process2.80E-03
72GO:0009658: chloroplast organization2.93E-03
73GO:0010218: response to far red light3.06E-03
74GO:0009944: polarity specification of adaxial/abaxial axis3.45E-03
75GO:0005992: trehalose biosynthetic process3.45E-03
76GO:0009637: response to blue light3.65E-03
77GO:0015976: carbon utilization3.76E-03
78GO:0009765: photosynthesis, light harvesting3.76E-03
79GO:0015846: polyamine transport3.76E-03
80GO:0033500: carbohydrate homeostasis3.76E-03
81GO:0015994: chlorophyll metabolic process3.76E-03
82GO:0022622: root system development3.76E-03
83GO:0006021: inositol biosynthetic process3.76E-03
84GO:0006552: leucine catabolic process3.76E-03
85GO:0007219: Notch signaling pathway3.76E-03
86GO:0010021: amylopectin biosynthetic process3.76E-03
87GO:0009768: photosynthesis, light harvesting in photosystem I3.81E-03
88GO:0006810: transport4.06E-03
89GO:0019748: secondary metabolic process4.59E-03
90GO:1902183: regulation of shoot apical meristem development4.83E-03
91GO:0006465: signal peptide processing4.83E-03
92GO:0016558: protein import into peroxisome matrix4.83E-03
93GO:0006564: L-serine biosynthetic process4.83E-03
94GO:0010236: plastoquinone biosynthetic process4.83E-03
95GO:0006656: phosphatidylcholine biosynthetic process4.83E-03
96GO:0031365: N-terminal protein amino acid modification4.83E-03
97GO:1902456: regulation of stomatal opening5.99E-03
98GO:0042793: transcription from plastid promoter5.99E-03
99GO:0010190: cytochrome b6f complex assembly5.99E-03
100GO:0003006: developmental process involved in reproduction5.99E-03
101GO:0046855: inositol phosphate dephosphorylation5.99E-03
102GO:0009664: plant-type cell wall organization6.77E-03
103GO:0042372: phylloquinone biosynthetic process7.24E-03
104GO:0010189: vitamin E biosynthetic process7.24E-03
105GO:0006281: DNA repair8.48E-03
106GO:0006635: fatty acid beta-oxidation8.54E-03
107GO:0009772: photosynthetic electron transport in photosystem II8.57E-03
108GO:0070370: cellular heat acclimation8.57E-03
109GO:0010050: vegetative phase change8.57E-03
110GO:1900057: positive regulation of leaf senescence8.57E-03
111GO:0009645: response to low light intensity stimulus8.57E-03
112GO:0022904: respiratory electron transport chain8.57E-03
113GO:0009769: photosynthesis, light harvesting in photosystem II8.57E-03
114GO:0032880: regulation of protein localization8.57E-03
115GO:0010583: response to cyclopentenone9.13E-03
116GO:0032502: developmental process9.13E-03
117GO:0006096: glycolytic process9.18E-03
118GO:0016559: peroxisome fission9.98E-03
119GO:0009850: auxin metabolic process9.98E-03
120GO:0006605: protein targeting9.98E-03
121GO:0032508: DNA duplex unwinding9.98E-03
122GO:0006353: DNA-templated transcription, termination9.98E-03
123GO:0070413: trehalose metabolism in response to stress9.98E-03
124GO:0010492: maintenance of shoot apical meristem identity9.98E-03
125GO:0031540: regulation of anthocyanin biosynthetic process9.98E-03
126GO:0000105: histidine biosynthetic process9.98E-03
127GO:0009231: riboflavin biosynthetic process9.98E-03
128GO:0009567: double fertilization forming a zygote and endosperm1.04E-02
129GO:0005975: carbohydrate metabolic process1.12E-02
130GO:0010093: specification of floral organ identity1.15E-02
131GO:0071482: cellular response to light stimulus1.15E-02
132GO:0001558: regulation of cell growth1.15E-02
133GO:0009827: plant-type cell wall modification1.15E-02
134GO:0010497: plasmodesmata-mediated intercellular transport1.15E-02
135GO:0017004: cytochrome complex assembly1.15E-02
136GO:0001666: response to hypoxia1.24E-02
137GO:0006098: pentose-phosphate shunt1.30E-02
138GO:0010206: photosystem II repair1.30E-02
139GO:2000024: regulation of leaf development1.30E-02
140GO:0048589: developmental growth1.30E-02
141GO:0009627: systemic acquired resistance1.39E-02
142GO:0015995: chlorophyll biosynthetic process1.46E-02
143GO:0005982: starch metabolic process1.47E-02
144GO:0006949: syncytium formation1.64E-02
145GO:0009813: flavonoid biosynthetic process1.71E-02
146GO:0010015: root morphogenesis1.82E-02
147GO:0006816: calcium ion transport1.82E-02
148GO:0009089: lysine biosynthetic process via diaminopimelate1.82E-02
149GO:0006913: nucleocytoplasmic transport1.82E-02
150GO:0072593: reactive oxygen species metabolic process1.82E-02
151GO:0009073: aromatic amino acid family biosynthetic process1.82E-02
152GO:0043085: positive regulation of catalytic activity1.82E-02
153GO:1903507: negative regulation of nucleic acid-templated transcription1.82E-02
154GO:0006352: DNA-templated transcription, initiation1.82E-02
155GO:0009750: response to fructose1.82E-02
156GO:0016485: protein processing1.82E-02
157GO:0006790: sulfur compound metabolic process2.00E-02
158GO:0010152: pollen maturation2.00E-02
159GO:0005983: starch catabolic process2.00E-02
160GO:0071365: cellular response to auxin stimulus2.00E-02
161GO:0018107: peptidyl-threonine phosphorylation2.19E-02
162GO:0009416: response to light stimulus2.28E-02
163GO:0009266: response to temperature stimulus2.39E-02
164GO:0009934: regulation of meristem structural organization2.39E-02
165GO:0006302: double-strand break repair2.39E-02
166GO:0048467: gynoecium development2.39E-02
167GO:0010020: chloroplast fission2.39E-02
168GO:0009933: meristem structural organization2.39E-02
169GO:0009451: RNA modification2.40E-02
170GO:0006631: fatty acid metabolic process2.46E-02
171GO:0019853: L-ascorbic acid biosynthetic process2.59E-02
172GO:0070588: calcium ion transmembrane transport2.59E-02
173GO:0046854: phosphatidylinositol phosphorylation2.59E-02
174GO:0032259: methylation2.60E-02
175GO:0016042: lipid catabolic process2.65E-02
176GO:0000162: tryptophan biosynthetic process2.80E-02
177GO:0006636: unsaturated fatty acid biosynthetic process2.80E-02
178GO:0006289: nucleotide-excision repair3.01E-02
179GO:0051302: regulation of cell division3.23E-02
180GO:0048511: rhythmic process3.46E-02
181GO:0019915: lipid storage3.46E-02
182GO:0061077: chaperone-mediated protein folding3.46E-02
183GO:0009269: response to desiccation3.46E-02
184GO:0051321: meiotic cell cycle3.46E-02
185GO:0048278: vesicle docking3.46E-02
186GO:0009733: response to auxin3.66E-02
187GO:2000022: regulation of jasmonic acid mediated signaling pathway3.69E-02
188GO:0010224: response to UV-B3.71E-02
189GO:0006012: galactose metabolic process3.92E-02
190GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.92E-02
191GO:0009411: response to UV3.92E-02
192GO:0071369: cellular response to ethylene stimulus3.92E-02
193GO:0001944: vasculature development3.92E-02
194GO:0048443: stamen development4.17E-02
195GO:0006284: base-excision repair4.17E-02
196GO:0009306: protein secretion4.17E-02
197GO:0008284: positive regulation of cell proliferation4.41E-02
198GO:0009740: gibberellic acid mediated signaling pathway4.79E-02
199GO:0009741: response to brassinosteroid4.91E-02
200GO:0009958: positive gravitropism4.91E-02
201GO:0006520: cellular amino acid metabolic process4.91E-02
202GO:0010154: fruit development4.91E-02
203GO:0048868: pollen tube development4.91E-02
204GO:0046323: glucose import4.91E-02
205GO:0009553: embryo sac development4.94E-02
RankGO TermAdjusted P value
1GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
2GO:0015129: lactate transmembrane transporter activity0.00E+00
3GO:0043136: glycerol-3-phosphatase activity0.00E+00
4GO:0000121: glycerol-1-phosphatase activity0.00E+00
5GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
6GO:0010349: L-galactose dehydrogenase activity0.00E+00
7GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
8GO:0016210: naringenin-chalcone synthase activity0.00E+00
9GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
10GO:0019808: polyamine binding0.00E+00
11GO:0010276: phytol kinase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0048039: ubiquinone binding0.00E+00
14GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
15GO:0042623: ATPase activity, coupled0.00E+00
16GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
17GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.60E-04
19GO:0080030: methyl indole-3-acetate esterase activity3.43E-04
20GO:0004462: lactoylglutathione lyase activity3.43E-04
21GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.58E-04
22GO:0004347: glucose-6-phosphate isomerase activity5.46E-04
23GO:0003985: acetyl-CoA C-acetyltransferase activity5.46E-04
24GO:0046920: alpha-(1->3)-fucosyltransferase activity5.46E-04
25GO:0050308: sugar-phosphatase activity5.46E-04
26GO:0019203: carbohydrate phosphatase activity5.46E-04
27GO:0010242: oxygen evolving activity5.46E-04
28GO:0042586: peptide deformylase activity5.46E-04
29GO:0042736: NADH kinase activity5.46E-04
30GO:0004033: aldo-keto reductase (NADP) activity7.29E-04
31GO:0016788: hydrolase activity, acting on ester bonds7.73E-04
32GO:0009977: proton motive force dependent protein transmembrane transporter activity1.17E-03
33GO:0004617: phosphoglycerate dehydrogenase activity1.17E-03
34GO:0052832: inositol monophosphate 3-phosphatase activity1.17E-03
35GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.17E-03
36GO:0019172: glyoxalase III activity1.17E-03
37GO:0019156: isoamylase activity1.17E-03
38GO:0008934: inositol monophosphate 1-phosphatase activity1.17E-03
39GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.17E-03
40GO:0052833: inositol monophosphate 4-phosphatase activity1.17E-03
41GO:0004826: phenylalanine-tRNA ligase activity1.17E-03
42GO:0000234: phosphoethanolamine N-methyltransferase activity1.17E-03
43GO:0047746: chlorophyllase activity1.17E-03
44GO:0042389: omega-3 fatty acid desaturase activity1.17E-03
45GO:0016868: intramolecular transferase activity, phosphotransferases1.17E-03
46GO:0004805: trehalose-phosphatase activity1.46E-03
47GO:0005504: fatty acid binding1.93E-03
48GO:0090729: toxin activity1.93E-03
49GO:0003913: DNA photolyase activity1.93E-03
50GO:0004565: beta-galactosidase activity2.20E-03
51GO:0008508: bile acid:sodium symporter activity2.80E-03
52GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.80E-03
53GO:0005354: galactose transmembrane transporter activity2.80E-03
54GO:0016851: magnesium chelatase activity2.80E-03
55GO:0031409: pigment binding3.11E-03
56GO:0005528: FK506 binding3.45E-03
57GO:0001053: plastid sigma factor activity3.76E-03
58GO:0010011: auxin binding3.76E-03
59GO:0004045: aminoacyl-tRNA hydrolase activity3.76E-03
60GO:0080032: methyl jasmonate esterase activity3.76E-03
61GO:0070628: proteasome binding3.76E-03
62GO:0016987: sigma factor activity3.76E-03
63GO:0045430: chalcone isomerase activity3.76E-03
64GO:0019199: transmembrane receptor protein kinase activity3.76E-03
65GO:0042277: peptide binding3.76E-03
66GO:0004659: prenyltransferase activity3.76E-03
67GO:0016279: protein-lysine N-methyltransferase activity3.76E-03
68GO:0003993: acid phosphatase activity3.87E-03
69GO:0008725: DNA-3-methyladenine glycosylase activity4.83E-03
70GO:0030570: pectate lyase activity5.01E-03
71GO:0004185: serine-type carboxypeptidase activity5.06E-03
72GO:2001070: starch binding5.99E-03
73GO:0004605: phosphatidate cytidylyltransferase activity5.99E-03
74GO:0004332: fructose-bisphosphate aldolase activity5.99E-03
75GO:0031593: polyubiquitin binding5.99E-03
76GO:0004556: alpha-amylase activity5.99E-03
77GO:0000293: ferric-chelate reductase activity5.99E-03
78GO:0042578: phosphoric ester hydrolase activity5.99E-03
79GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.16E-03
80GO:0008195: phosphatidate phosphatase activity7.24E-03
81GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity7.24E-03
82GO:0008113: peptide-methionine (S)-S-oxide reductase activity7.24E-03
83GO:0048038: quinone binding8.54E-03
84GO:0009881: photoreceptor activity8.57E-03
85GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups9.57E-03
86GO:0003684: damaged DNA binding1.04E-02
87GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity1.15E-02
88GO:0103095: wax ester synthase activity1.15E-02
89GO:0003951: NAD+ kinase activity1.15E-02
90GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.15E-02
91GO:0016597: amino acid binding1.17E-02
92GO:0008417: fucosyltransferase activity1.30E-02
93GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.30E-02
94GO:0016168: chlorophyll binding1.31E-02
95GO:0015020: glucuronosyltransferase activity1.64E-02
96GO:0052689: carboxylic ester hydrolase activity1.80E-02
97GO:0030145: manganese ion binding1.88E-02
98GO:0004521: endoribonuclease activity2.00E-02
99GO:0000049: tRNA binding2.00E-02
100GO:0005262: calcium channel activity2.19E-02
101GO:0004089: carbonate dehydratase activity2.19E-02
102GO:0008083: growth factor activity2.39E-02
103GO:0004175: endopeptidase activity2.39E-02
104GO:0008266: poly(U) RNA binding2.39E-02
105GO:0003887: DNA-directed DNA polymerase activity2.80E-02
106GO:0051537: 2 iron, 2 sulfur cluster binding2.88E-02
107GO:0043621: protein self-association2.88E-02
108GO:0043130: ubiquitin binding3.01E-02
109GO:0003714: transcription corepressor activity3.01E-02
110GO:0009055: electron carrier activity3.07E-02
111GO:0004519: endonuclease activity3.13E-02
112GO:0008408: 3'-5' exonuclease activity3.46E-02
113GO:0033612: receptor serine/threonine kinase binding3.46E-02
114GO:0003727: single-stranded RNA binding4.17E-02
115GO:0016874: ligase activity4.79E-02
RankGO TermAdjusted P value
1GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0010368: chloroplast isoamylase complex0.00E+00
4GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
5GO:0042597: periplasmic space0.00E+00
6GO:0009349: riboflavin synthase complex0.00E+00
7GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
8GO:0009507: chloroplast6.26E-23
9GO:0009535: chloroplast thylakoid membrane9.24E-16
10GO:0009534: chloroplast thylakoid1.03E-09
11GO:0009570: chloroplast stroma1.21E-09
12GO:0030095: chloroplast photosystem II3.45E-07
13GO:0009941: chloroplast envelope6.51E-07
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.69E-06
15GO:0009543: chloroplast thylakoid lumen1.81E-06
16GO:0010287: plastoglobule1.62E-05
17GO:0009579: thylakoid2.12E-05
18GO:0009654: photosystem II oxygen evolving complex3.14E-05
19GO:0009538: photosystem I reaction center3.45E-05
20GO:0019898: extrinsic component of membrane1.30E-04
21GO:0031361: integral component of thylakoid membrane5.46E-04
22GO:0000791: euchromatin5.46E-04
23GO:0005787: signal peptidase complex5.46E-04
24GO:0070765: gamma-secretase complex5.46E-04
25GO:0009522: photosystem I1.01E-03
26GO:0000427: plastid-encoded plastid RNA polymerase complex1.17E-03
27GO:0030870: Mre11 complex1.17E-03
28GO:0033281: TAT protein transport complex1.93E-03
29GO:0010007: magnesium chelatase complex1.93E-03
30GO:0030076: light-harvesting complex2.79E-03
31GO:0009531: secondary cell wall2.80E-03
32GO:0042646: plastid nucleoid2.80E-03
33GO:0009517: PSII associated light-harvesting complex II3.76E-03
34GO:0031969: chloroplast membrane4.28E-03
35GO:0031977: thylakoid lumen4.56E-03
36GO:0000795: synaptonemal complex4.83E-03
37GO:0009523: photosystem II7.97E-03
38GO:0009533: chloroplast stromal thylakoid8.57E-03
39GO:0031305: integral component of mitochondrial inner membrane9.98E-03
40GO:0008180: COP9 signalosome1.30E-02
41GO:0042644: chloroplast nucleoid1.30E-02
42GO:0055028: cortical microtubule1.64E-02
43GO:0005740: mitochondrial envelope1.64E-02
44GO:0090404: pollen tube tip1.82E-02
45GO:0032040: small-subunit processome2.00E-02
46GO:0009508: plastid chromosome2.19E-02
47GO:0005887: integral component of plasma membrane4.32E-02
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Gene type



Gene DE type