Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34070

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
2GO:0090239: regulation of histone H4 acetylation0.00E+00
3GO:0001881: receptor recycling0.00E+00
4GO:0000740: nuclear membrane fusion0.00E+00
5GO:0006592: ornithine biosynthetic process0.00E+00
6GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
7GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
8GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
9GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
10GO:0006412: translation2.36E-79
11GO:0042254: ribosome biogenesis4.12E-35
12GO:0000027: ribosomal large subunit assembly3.49E-08
13GO:0006511: ubiquitin-dependent protein catabolic process3.93E-07
14GO:0000413: protein peptidyl-prolyl isomerization7.32E-06
15GO:0000028: ribosomal small subunit assembly4.40E-05
16GO:0008333: endosome to lysosome transport5.24E-05
17GO:1902626: assembly of large subunit precursor of preribosome5.24E-05
18GO:0051603: proteolysis involved in cellular protein catabolic process5.53E-05
19GO:0000387: spliceosomal snRNP assembly1.08E-04
20GO:0010387: COP9 signalosome assembly1.89E-04
21GO:0006626: protein targeting to mitochondrion2.50E-04
22GO:0043248: proteasome assembly4.00E-04
23GO:0009554: megasporogenesis5.32E-04
24GO:0009955: adaxial/abaxial pattern specification5.32E-04
25GO:0015801: aromatic amino acid transport6.04E-04
26GO:1990258: histone glutamine methylation6.04E-04
27GO:0048453: sepal formation6.04E-04
28GO:0031060: regulation of histone methylation6.04E-04
29GO:2001006: regulation of cellulose biosynthetic process6.04E-04
30GO:0006434: seryl-tRNA aminoacylation6.04E-04
31GO:0000494: box C/D snoRNA 3'-end processing6.04E-04
32GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.04E-04
33GO:0006407: rRNA export from nucleus6.04E-04
34GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.04E-04
35GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process6.04E-04
36GO:0000338: protein deneddylation6.80E-04
37GO:0000398: mRNA splicing, via spliceosome8.72E-04
38GO:0042147: retrograde transport, endosome to Golgi9.17E-04
39GO:0001510: RNA methylation1.03E-03
40GO:0046686: response to cadmium ion1.09E-03
41GO:0045905: positive regulation of translational termination1.30E-03
42GO:1901703: protein localization involved in auxin polar transport1.30E-03
43GO:0071668: plant-type cell wall assembly1.30E-03
44GO:0006435: threonyl-tRNA aminoacylation1.30E-03
45GO:2000072: regulation of defense response to fungus, incompatible interaction1.30E-03
46GO:0045901: positive regulation of translational elongation1.30E-03
47GO:0045041: protein import into mitochondrial intermembrane space1.30E-03
48GO:0043981: histone H4-K5 acetylation1.30E-03
49GO:0055129: L-proline biosynthetic process1.30E-03
50GO:0006452: translational frameshifting1.30E-03
51GO:0010198: synergid death1.30E-03
52GO:0015786: UDP-glucose transport1.30E-03
53GO:0006432: phenylalanyl-tRNA aminoacylation1.30E-03
54GO:0051788: response to misfolded protein1.30E-03
55GO:0009651: response to salt stress1.99E-03
56GO:0006457: protein folding2.10E-03
57GO:0002181: cytoplasmic translation2.14E-03
58GO:0046417: chorismate metabolic process2.14E-03
59GO:1904278: positive regulation of wax biosynthetic process2.14E-03
60GO:0045793: positive regulation of cell size2.14E-03
61GO:0015783: GDP-fucose transport2.14E-03
62GO:0034227: tRNA thio-modification2.14E-03
63GO:0042256: mature ribosome assembly2.14E-03
64GO:0010338: leaf formation2.14E-03
65GO:0010452: histone H3-K36 methylation2.14E-03
66GO:0046168: glycerol-3-phosphate catabolic process2.14E-03
67GO:0032940: secretion by cell2.14E-03
68GO:0016925: protein sumoylation2.25E-03
69GO:0006820: anion transport2.25E-03
70GO:0009735: response to cytokinin2.87E-03
71GO:0006228: UTP biosynthetic process3.10E-03
72GO:0006164: purine nucleotide biosynthetic process3.10E-03
73GO:0009558: embryo sac cellularization3.10E-03
74GO:0006882: cellular zinc ion homeostasis3.10E-03
75GO:0001676: long-chain fatty acid metabolic process3.10E-03
76GO:0046513: ceramide biosynthetic process3.10E-03
77GO:0032877: positive regulation of DNA endoreduplication3.10E-03
78GO:0046836: glycolipid transport3.10E-03
79GO:0006166: purine ribonucleoside salvage3.10E-03
80GO:0070301: cellular response to hydrogen peroxide3.10E-03
81GO:0051085: chaperone mediated protein folding requiring cofactor3.10E-03
82GO:0009647: skotomorphogenesis3.10E-03
83GO:0006241: CTP biosynthetic process3.10E-03
84GO:0072334: UDP-galactose transmembrane transport3.10E-03
85GO:0010971: positive regulation of G2/M transition of mitotic cell cycle3.10E-03
86GO:0006072: glycerol-3-phosphate metabolic process3.10E-03
87GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.10E-03
88GO:0006168: adenine salvage3.10E-03
89GO:0006165: nucleoside diphosphate phosphorylation3.10E-03
90GO:0006406: mRNA export from nucleus4.02E-03
91GO:0006289: nucleotide-excision repair4.02E-03
92GO:0051781: positive regulation of cell division4.19E-03
93GO:0042274: ribosomal small subunit biogenesis4.19E-03
94GO:0006183: GTP biosynthetic process4.19E-03
95GO:0010363: regulation of plant-type hypersensitive response4.19E-03
96GO:0061077: chaperone-mediated protein folding4.89E-03
97GO:0036065: fucosylation5.38E-03
98GO:0007029: endoplasmic reticulum organization5.38E-03
99GO:1902183: regulation of shoot apical meristem development5.38E-03
100GO:0044209: AMP salvage5.38E-03
101GO:0045116: protein neddylation5.38E-03
102GO:0031167: rRNA methylation5.38E-03
103GO:0008283: cell proliferation6.16E-03
104GO:0006561: proline biosynthetic process6.67E-03
105GO:0006777: Mo-molybdopterin cofactor biosynthetic process6.67E-03
106GO:0051568: histone H3-K4 methylation6.67E-03
107GO:0045040: protein import into mitochondrial outer membrane6.67E-03
108GO:0010358: leaf shaping6.67E-03
109GO:0000245: spliceosomal complex assembly8.07E-03
110GO:1901001: negative regulation of response to salt stress8.07E-03
111GO:0009612: response to mechanical stimulus8.07E-03
112GO:0006458: 'de novo' protein folding8.07E-03
113GO:0042026: protein refolding8.07E-03
114GO:0009793: embryo development ending in seed dormancy8.17E-03
115GO:0006414: translational elongation8.29E-03
116GO:0009908: flower development8.54E-03
117GO:0048528: post-embryonic root development9.56E-03
118GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c9.56E-03
119GO:0006506: GPI anchor biosynthetic process1.11E-02
120GO:0050821: protein stabilization1.11E-02
121GO:0031540: regulation of anthocyanin biosynthetic process1.11E-02
122GO:0009690: cytokinin metabolic process1.11E-02
123GO:0030163: protein catabolic process1.14E-02
124GO:0006526: arginine biosynthetic process1.28E-02
125GO:0009808: lignin metabolic process1.28E-02
126GO:0010093: specification of floral organ identity1.28E-02
127GO:0010100: negative regulation of photomorphogenesis1.28E-02
128GO:0048507: meristem development1.46E-02
129GO:0006189: 'de novo' IMP biosynthetic process1.46E-02
130GO:0048589: developmental growth1.46E-02
131GO:0015780: nucleotide-sugar transport1.46E-02
132GO:0098656: anion transmembrane transport1.46E-02
133GO:0046685: response to arsenic-containing substance1.46E-02
134GO:0009245: lipid A biosynthetic process1.46E-02
135GO:0071577: zinc II ion transmembrane transport1.64E-02
136GO:0010267: production of ta-siRNAs involved in RNA interference1.64E-02
137GO:0042761: very long-chain fatty acid biosynthetic process1.64E-02
138GO:0010449: root meristem growth1.64E-02
139GO:0043069: negative regulation of programmed cell death1.83E-02
140GO:0045036: protein targeting to chloroplast1.83E-02
141GO:0016441: posttranscriptional gene silencing1.83E-02
142GO:0006352: DNA-templated transcription, initiation2.03E-02
143GO:0015770: sucrose transport2.03E-02
144GO:0048229: gametophyte development2.03E-02
145GO:0016485: protein processing2.03E-02
146GO:0010015: root morphogenesis2.03E-02
147GO:0009073: aromatic amino acid family biosynthetic process2.03E-02
148GO:0006913: nucleocytoplasmic transport2.03E-02
149GO:0010043: response to zinc ion2.20E-02
150GO:0006890: retrograde vesicle-mediated transport, Golgi to ER2.24E-02
151GO:0010102: lateral root morphogenesis2.45E-02
152GO:2000028: regulation of photoperiodism, flowering2.45E-02
153GO:0045454: cell redox homeostasis2.55E-02
154GO:0006413: translational initiation2.60E-02
155GO:0015031: protein transport2.61E-02
156GO:0006446: regulation of translational initiation2.67E-02
157GO:0009933: meristem structural organization2.67E-02
158GO:0048467: gynoecium development2.67E-02
159GO:0048440: carpel development2.67E-02
160GO:0007034: vacuolar transport2.67E-02
161GO:0009969: xyloglucan biosynthetic process2.90E-02
162GO:0009926: auxin polar transport3.11E-02
163GO:0034976: response to endoplasmic reticulum stress3.13E-02
164GO:0042753: positive regulation of circadian rhythm3.13E-02
165GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.26E-02
166GO:0030150: protein import into mitochondrial matrix3.37E-02
167GO:0006487: protein N-linked glycosylation3.37E-02
168GO:0009116: nucleoside metabolic process3.37E-02
169GO:0008643: carbohydrate transport3.37E-02
170GO:0009408: response to heat3.47E-02
171GO:0009965: leaf morphogenesis3.50E-02
172GO:0008380: RNA splicing3.53E-02
173GO:0010073: meristem maintenance3.61E-02
174GO:0003333: amino acid transmembrane transport3.87E-02
175GO:0051260: protein homooligomerization3.87E-02
176GO:0010431: seed maturation3.87E-02
177GO:0007005: mitochondrion organization4.12E-02
178GO:0016226: iron-sulfur cluster assembly4.12E-02
179GO:0006364: rRNA processing4.19E-02
180GO:0009585: red, far-red light phototransduction4.19E-02
181GO:0040007: growth4.39E-02
182GO:0006012: galactose metabolic process4.39E-02
183GO:0010082: regulation of root meristem growth4.39E-02
184GO:0019722: calcium-mediated signaling4.65E-02
185GO:0010089: xylem development4.65E-02
186GO:0010584: pollen exine formation4.65E-02
187GO:0048443: stamen development4.65E-02
RankGO TermAdjusted P value
1GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
2GO:0061799: cyclic pyranopterin monophosphate synthase activity0.00E+00
3GO:0008777: acetylornithine deacetylase activity0.00E+00
4GO:0008752: FMN reductase activity0.00E+00
5GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
6GO:0016881: acid-amino acid ligase activity0.00E+00
7GO:0052873: FMN reductase (NADPH) activity0.00E+00
8GO:0004735: pyrroline-5-carboxylate reductase activity0.00E+00
9GO:0003735: structural constituent of ribosome5.14E-103
10GO:0003729: mRNA binding1.92E-23
11GO:0004298: threonine-type endopeptidase activity6.54E-19
12GO:0008233: peptidase activity5.25E-13
13GO:0019843: rRNA binding1.84E-08
14GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.45E-05
15GO:0008097: 5S rRNA binding1.10E-04
16GO:0031386: protein tag2.86E-04
17GO:0003723: RNA binding4.05E-04
18GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity6.04E-04
19GO:1990259: histone-glutamine methyltransferase activity6.04E-04
20GO:0035614: snRNA stem-loop binding6.04E-04
21GO:0016817: hydrolase activity, acting on acid anhydrides6.04E-04
22GO:0000824: inositol tetrakisphosphate 3-kinase activity6.04E-04
23GO:0047326: inositol tetrakisphosphate 5-kinase activity6.04E-04
24GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity6.04E-04
25GO:0004828: serine-tRNA ligase activity6.04E-04
26GO:0003746: translation elongation factor activity7.89E-04
27GO:0015288: porin activity8.46E-04
28GO:0043022: ribosome binding8.46E-04
29GO:0008308: voltage-gated anion channel activity1.03E-03
30GO:0004826: phenylalanine-tRNA ligase activity1.30E-03
31GO:0030619: U1 snRNA binding1.30E-03
32GO:0050291: sphingosine N-acyltransferase activity1.30E-03
33GO:0019781: NEDD8 activating enzyme activity1.30E-03
34GO:0015173: aromatic amino acid transmembrane transporter activity1.30E-03
35GO:1990585: hydroxyproline O-arabinosyltransferase activity1.30E-03
36GO:0004106: chorismate mutase activity1.30E-03
37GO:0004829: threonine-tRNA ligase activity1.30E-03
38GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.30E-03
39GO:0001055: RNA polymerase II activity1.45E-03
40GO:0001054: RNA polymerase I activity1.97E-03
41GO:0008237: metallopeptidase activity2.01E-03
42GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.14E-03
43GO:0005457: GDP-fucose transmembrane transporter activity2.14E-03
44GO:0008430: selenium binding2.14E-03
45GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.14E-03
46GO:0008649: rRNA methyltransferase activity2.14E-03
47GO:0001056: RNA polymerase III activity2.25E-03
48GO:0004550: nucleoside diphosphate kinase activity3.10E-03
49GO:0017089: glycolipid transporter activity3.10E-03
50GO:0003999: adenine phosphoribosyltransferase activity3.10E-03
51GO:0005460: UDP-glucose transmembrane transporter activity3.10E-03
52GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.28E-03
53GO:0010011: auxin binding4.19E-03
54GO:0051861: glycolipid binding4.19E-03
55GO:0070628: proteasome binding4.19E-03
56GO:0004576: oligosaccharyl transferase activity4.19E-03
57GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity5.38E-03
58GO:0004888: transmembrane signaling receptor activity5.38E-03
59GO:0005459: UDP-galactose transmembrane transporter activity5.38E-03
60GO:0008641: small protein activating enzyme activity5.38E-03
61GO:0005275: amine transmembrane transporter activity5.38E-03
62GO:0008514: organic anion transmembrane transporter activity6.37E-03
63GO:0031593: polyubiquitin binding6.67E-03
64GO:0031177: phosphopantetheine binding6.67E-03
65GO:0019887: protein kinase regulator activity8.07E-03
66GO:0051920: peroxiredoxin activity8.07E-03
67GO:0000035: acyl binding8.07E-03
68GO:0102391: decanoate--CoA ligase activity8.07E-03
69GO:0003899: DNA-directed 5'-3' RNA polymerase activity9.03E-03
70GO:0030515: snoRNA binding9.56E-03
71GO:0004467: long-chain fatty acid-CoA ligase activity9.56E-03
72GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity9.56E-03
73GO:0005338: nucleotide-sugar transmembrane transporter activity9.56E-03
74GO:0008235: metalloexopeptidase activity9.56E-03
75GO:0042162: telomeric DNA binding9.56E-03
76GO:0008121: ubiquinol-cytochrome-c reductase activity9.56E-03
77GO:0000166: nucleotide binding1.04E-02
78GO:0016209: antioxidant activity1.11E-02
79GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.11E-02
80GO:0004034: aldose 1-epimerase activity1.11E-02
81GO:0008173: RNA methyltransferase activity1.28E-02
82GO:0008417: fucosyltransferase activity1.46E-02
83GO:0000989: transcription factor activity, transcription factor binding1.46E-02
84GO:0008794: arsenate reductase (glutaredoxin) activity2.03E-02
85GO:0008327: methyl-CpG binding2.03E-02
86GO:0004177: aminopeptidase activity2.03E-02
87GO:0044183: protein binding involved in protein folding2.03E-02
88GO:0008515: sucrose transmembrane transporter activity2.03E-02
89GO:0046961: proton-transporting ATPase activity, rotational mechanism2.03E-02
90GO:0000049: tRNA binding2.24E-02
91GO:0003697: single-stranded DNA binding2.41E-02
92GO:0015266: protein channel activity2.45E-02
93GO:0031072: heat shock protein binding2.45E-02
94GO:0051119: sugar transmembrane transporter activity2.90E-02
95GO:0003712: transcription cofactor activity2.90E-02
96GO:0005385: zinc ion transmembrane transporter activity3.37E-02
97GO:0043130: ubiquitin binding3.37E-02
98GO:0005528: FK506 binding3.37E-02
99GO:0003743: translation initiation factor activity3.44E-02
100GO:0043424: protein histidine kinase binding3.61E-02
101GO:0036459: thiol-dependent ubiquitinyl hydrolase activity3.87E-02
102GO:0003756: protein disulfide isomerase activity4.65E-02
103GO:0047134: protein-disulfide reductase activity4.93E-02
RankGO TermAdjusted P value
1GO:0043186: P granule0.00E+00
2GO:0005675: holo TFIIH complex0.00E+00
3GO:0097361: CIA complex0.00E+00
4GO:0005840: ribosome3.21E-80
5GO:0022626: cytosolic ribosome2.12E-70
6GO:0022625: cytosolic large ribosomal subunit9.14E-66
7GO:0022627: cytosolic small ribosomal subunit1.01E-39
8GO:0005829: cytosol1.91E-32
9GO:0005737: cytoplasm5.10E-32
10GO:0005730: nucleolus9.18E-25
11GO:0005839: proteasome core complex6.54E-19
12GO:0000502: proteasome complex1.88E-18
13GO:0005774: vacuolar membrane3.13E-15
14GO:0009506: plasmodesma2.41E-13
15GO:0016020: membrane9.61E-13
16GO:0019773: proteasome core complex, alpha-subunit complex2.01E-08
17GO:0015934: large ribosomal subunit2.36E-08
18GO:0005773: vacuole7.84E-08
19GO:0005732: small nucleolar ribonucleoprotein complex1.91E-06
20GO:0015935: small ribosomal subunit2.33E-06
21GO:0005618: cell wall1.03E-04
22GO:0009507: chloroplast1.74E-04
23GO:0005665: DNA-directed RNA polymerase II, core complex2.08E-04
24GO:0019013: viral nucleocapsid2.50E-04
25GO:0005771: multivesicular body4.00E-04
26GO:0030904: retromer complex4.00E-04
27GO:0000419: DNA-directed RNA polymerase V complex4.01E-04
28GO:0005681: spliceosomal complex4.84E-04
29GO:0005741: mitochondrial outer membrane5.92E-04
30GO:0030686: 90S preribosome6.04E-04
31GO:0019774: proteasome core complex, beta-subunit complex6.04E-04
32GO:0005886: plasma membrane6.22E-04
33GO:0046930: pore complex1.03E-03
34GO:0005742: mitochondrial outer membrane translocase complex1.03E-03
35GO:0005736: DNA-directed RNA polymerase I complex1.23E-03
36GO:0008180: COP9 signalosome1.23E-03
37GO:0005685: U1 snRNP1.23E-03
38GO:0005697: telomerase holoenzyme complex1.30E-03
39GO:0005666: DNA-directed RNA polymerase III complex1.45E-03
40GO:0071011: precatalytic spliceosome1.45E-03
41GO:0015030: Cajal body1.45E-03
42GO:0000418: DNA-directed RNA polymerase IV complex1.70E-03
43GO:0071013: catalytic step 2 spliceosome1.97E-03
44GO:0008541: proteasome regulatory particle, lid subcomplex1.97E-03
45GO:0005853: eukaryotic translation elongation factor 1 complex2.14E-03
46GO:0000439: core TFIIH complex2.14E-03
47GO:0046861: glyoxysomal membrane2.14E-03
48GO:0034719: SMN-Sm protein complex2.14E-03
49GO:0032040: small-subunit processome2.25E-03
50GO:0005783: endoplasmic reticulum2.46E-03
51GO:0033180: proton-transporting V-type ATPase, V1 domain3.10E-03
52GO:1990726: Lsm1-7-Pat1 complex3.10E-03
53GO:0005956: protein kinase CK2 complex3.10E-03
54GO:0009331: glycerol-3-phosphate dehydrogenase complex3.10E-03
55GO:0016593: Cdc73/Paf1 complex4.19E-03
56GO:0005682: U5 snRNP4.19E-03
57GO:0000445: THO complex part of transcription export complex4.19E-03
58GO:0080008: Cul4-RING E3 ubiquitin ligase complex4.53E-03
59GO:0008250: oligosaccharyltransferase complex5.38E-03
60GO:0005687: U4 snRNP5.38E-03
61GO:0097526: spliceosomal tri-snRNP complex5.38E-03
62GO:0031428: box C/D snoRNP complex6.67E-03
63GO:0005689: U12-type spliceosomal complex8.07E-03
64GO:0005801: cis-Golgi network8.07E-03
65GO:0000347: THO complex9.56E-03
66GO:0071004: U2-type prespliceosome1.11E-02
67GO:0005688: U6 snRNP1.11E-02
68GO:0000421: autophagosome membrane1.11E-02
69GO:0005834: heterotrimeric G-protein complex1.21E-02
70GO:0005794: Golgi apparatus1.23E-02
71GO:0009514: glyoxysome1.28E-02
72GO:0046540: U4/U6 x U5 tri-snRNP complex1.28E-02
73GO:0005788: endoplasmic reticulum lumen1.54E-02
74GO:0005686: U2 snRNP1.83E-02
75GO:0005852: eukaryotic translation initiation factor 3 complex2.03E-02
76GO:0048471: perinuclear region of cytoplasm2.03E-02
77GO:0009508: plastid chromosome2.45E-02
78GO:0005759: mitochondrial matrix2.52E-02
79GO:0005750: mitochondrial respiratory chain complex III2.67E-02
80GO:0031902: late endosome membrane2.87E-02
81GO:0005769: early endosome3.13E-02
82GO:0005758: mitochondrial intermembrane space3.37E-02
83GO:0070469: respiratory chain3.61E-02
84GO:0031410: cytoplasmic vesicle4.12E-02
85GO:0005744: mitochondrial inner membrane presequence translocase complex4.65E-02
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Gene type



Gene DE type