co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006482: protein demethylation	0.00E+00
2	GO:0019685: photosynthesis, dark reaction	0.00E+00
3	GO:0010343: singlet oxygen-mediated programmed cell death	0.00E+00
4	GO:0009583: detection of light stimulus	0.00E+00
5	GO:0090470: shoot organ boundary specification	0.00E+00
6	GO:0048856: anatomical structure development	0.00E+00
7	GO:0071000: response to magnetism	0.00E+00
8	GO:0016576: histone dephosphorylation	0.00E+00
9	GO:0009661: chromoplast organization	0.00E+00
10	GO:0005997: xylulose metabolic process	0.00E+00
11	GO:0080005: photosystem stoichiometry adjustment	7.28E-07
12	GO:2001141: regulation of RNA biosynthetic process	6.48E-06
13	GO:0000304: response to singlet oxygen	2.01E-05
14	GO:0010190: cytochrome b6f complex assembly	3.03E-05
15	GO:0009658: chloroplast organization	4.38E-05
16	GO:0071482: cellular response to light stimulus	9.46E-05
17	GO:0006430: lysyl-tRNA aminoacylation	1.20E-04
18	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.20E-04
19	GO:0006567: threonine catabolic process	1.20E-04
20	GO:0010362: negative regulation of anion channel activity by blue light	1.20E-04
21	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	1.20E-04
22	GO:0072387: flavin adenine dinucleotide metabolic process	1.20E-04
23	GO:0071461: cellular response to redox state	1.20E-04
24	GO:0009638: phototropism	1.41E-04
25	GO:0006352: DNA-templated transcription, initiation	1.96E-04
26	GO:0009767: photosynthetic electron transport chain	2.59E-04
27	GO:0010024: phytochromobilin biosynthetic process	2.77E-04
28	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.77E-04
29	GO:1901529: positive regulation of anion channel activity	2.77E-04
30	GO:0010617: circadian regulation of calcium ion oscillation	2.77E-04
31	GO:0099402: plant organ development	2.77E-04
32	GO:1904143: positive regulation of carotenoid biosynthetic process	2.77E-04
33	GO:0035335: peptidyl-tyrosine dephosphorylation	2.77E-04
34	GO:1902448: positive regulation of shade avoidance	4.58E-04
35	GO:0006013: mannose metabolic process	4.58E-04
36	GO:1901672: positive regulation of systemic acquired resistance	4.58E-04
37	GO:0009150: purine ribonucleotide metabolic process	4.58E-04
38	GO:0071836: nectar secretion	4.58E-04
39	GO:0006696: ergosterol biosynthetic process	4.58E-04
40	GO:0045739: positive regulation of DNA repair	4.58E-04
41	GO:0016226: iron-sulfur cluster assembly	5.41E-04
42	GO:0010371: regulation of gibberellin biosynthetic process	6.57E-04
43	GO:1901332: negative regulation of lateral root development	6.57E-04
44	GO:0006882: cellular zinc ion homeostasis	6.57E-04
45	GO:0010118: stomatal movement	7.45E-04
46	GO:0006545: glycine biosynthetic process	8.72E-04
47	GO:0042274: ribosomal small subunit biogenesis	8.72E-04
48	GO:1902347: response to strigolactone	8.72E-04
49	GO:0009902: chloroplast relocation	8.72E-04
50	GO:0016120: carotene biosynthetic process	1.10E-03
51	GO:0010117: photoprotection	1.10E-03
52	GO:0046283: anthocyanin-containing compound metabolic process	1.10E-03
53	GO:1901371: regulation of leaf morphogenesis	1.35E-03
54	GO:0060918: auxin transport	1.35E-03
55	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.35E-03
56	GO:0010310: regulation of hydrogen peroxide metabolic process	1.61E-03
57	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.61E-03
58	GO:0010019: chloroplast-nucleus signaling pathway	1.61E-03
59	GO:0018298: protein-chromophore linkage	1.81E-03
60	GO:1900056: negative regulation of leaf senescence	1.89E-03
61	GO:0030026: cellular manganese ion homeostasis	1.89E-03
62	GO:0006400: tRNA modification	1.89E-03
63	GO:0051510: regulation of unidimensional cell growth	1.89E-03
64	GO:0007568: aging	2.08E-03
65	GO:0048564: photosystem I assembly	2.19E-03
66	GO:0030091: protein repair	2.19E-03
67	GO:0001522: pseudouridine synthesis	2.19E-03
68	GO:0009704: de-etiolation	2.19E-03
69	GO:0050821: protein stabilization	2.19E-03
70	GO:0006102: isocitrate metabolic process	2.19E-03
71	GO:0009637: response to blue light	2.28E-03
72	GO:0009821: alkaloid biosynthetic process	2.82E-03
73	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.82E-03
74	GO:0009640: photomorphogenesis	2.93E-03
75	GO:1900426: positive regulation of defense response to bacterium	3.16E-03
76	GO:0010380: regulation of chlorophyll biosynthetic process	3.16E-03
77	GO:0055062: phosphate ion homeostasis	3.51E-03
78	GO:0046777: protein autophosphorylation	3.51E-03
79	GO:0006535: cysteine biosynthetic process from serine	3.51E-03
80	GO:0000103: sulfate assimilation	3.51E-03
81	GO:0045036: protein targeting to chloroplast	3.51E-03
82	GO:0006816: calcium ion transport	3.88E-03
83	GO:0008285: negative regulation of cell proliferation	3.88E-03
84	GO:0006790: sulfur compound metabolic process	4.26E-03
85	GO:0005986: sucrose biosynthetic process	4.64E-03
86	GO:0009785: blue light signaling pathway	4.64E-03
87	GO:0010075: regulation of meristem growth	4.64E-03
88	GO:0006541: glutamine metabolic process	5.04E-03
89	GO:0019344: cysteine biosynthetic process	6.32E-03
90	GO:2000377: regulation of reactive oxygen species metabolic process	6.32E-03
91	GO:0006418: tRNA aminoacylation for protein translation	6.76E-03
92	GO:0007017: microtubule-based process	6.76E-03
93	GO:0010073: meristem maintenance	6.76E-03
94	GO:0010227: floral organ abscission	8.18E-03
95	GO:0016117: carotenoid biosynthetic process	9.17E-03
96	GO:0007623: circadian rhythm	9.64E-03
97	GO:0010051: xylem and phloem pattern formation	9.68E-03
98	GO:0010087: phloem or xylem histogenesis	9.68E-03
99	GO:0010228: vegetative to reproductive phase transition of meristem	1.01E-02
100	GO:0006520: cellular amino acid metabolic process	1.02E-02
101	GO:0006662: glycerol ether metabolic process	1.02E-02
102	GO:0009646: response to absence of light	1.07E-02
103	GO:0042752: regulation of circadian rhythm	1.07E-02
104	GO:0009791: post-embryonic development	1.13E-02
105	GO:0006464: cellular protein modification process	1.36E-02
106	GO:0071805: potassium ion transmembrane transport	1.41E-02
107	GO:0016126: sterol biosynthetic process	1.54E-02
108	GO:0009816: defense response to bacterium, incompatible interaction	1.60E-02
109	GO:0006950: response to stress	1.72E-02
110	GO:0048481: plant ovule development	1.85E-02
111	GO:0000160: phosphorelay signal transduction system	1.92E-02
112	GO:0006811: ion transport	1.99E-02
113	GO:0010218: response to far red light	1.99E-02
114	GO:0009910: negative regulation of flower development	2.05E-02
115	GO:0009631: cold acclimation	2.05E-02
116	GO:0010043: response to zinc ion	2.05E-02
117	GO:0006865: amino acid transport	2.12E-02
118	GO:0006099: tricarboxylic acid cycle	2.26E-02
119	GO:0034599: cellular response to oxidative stress	2.26E-02
120	GO:0006897: endocytosis	2.48E-02
121	GO:0032259: methylation	2.63E-02
122	GO:0010114: response to red light	2.63E-02
123	GO:0009644: response to high light intensity	2.78E-02
124	GO:0009965: leaf morphogenesis	2.85E-02
125	GO:0055114: oxidation-reduction process	2.85E-02
126	GO:0009809: lignin biosynthetic process	3.25E-02
127	GO:0006813: potassium ion transport	3.25E-02
128	GO:0006417: regulation of translation	3.49E-02
129	GO:0006508: proteolysis	3.62E-02
130	GO:0042545: cell wall modification	4.09E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
3	GO:0046905: phytoene synthase activity	0.00E+00
4	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
5	GO:0051723: protein methylesterase activity	0.00E+00
6	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
7	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
8	GO:0009882: blue light photoreceptor activity	6.48E-06
9	GO:0001053: plastid sigma factor activity	1.22E-05
10	GO:0016987: sigma factor activity	1.22E-05
11	GO:0071949: FAD binding	1.17E-04
12	GO:0004824: lysine-tRNA ligase activity	1.20E-04
13	GO:0015085: calcium ion transmembrane transporter activity	1.20E-04
14	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.20E-04
15	GO:0051996: squalene synthase activity	1.20E-04
16	GO:0004856: xylulokinase activity	1.20E-04
17	GO:0004793: threonine aldolase activity	1.20E-04
18	GO:0016783: sulfurtransferase activity	1.20E-04
19	GO:0008242: omega peptidase activity	1.20E-04
20	GO:0008732: L-allo-threonine aldolase activity	1.20E-04
21	GO:0030941: chloroplast targeting sequence binding	1.20E-04
22	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.20E-04
23	GO:0004047: aminomethyltransferase activity	2.77E-04
24	GO:0004046: aminoacylase activity	2.77E-04
25	GO:0034722: gamma-glutamyl-peptidase activity	2.77E-04
26	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.77E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.77E-04
28	GO:0004180: carboxypeptidase activity	4.58E-04
29	GO:0046524: sucrose-phosphate synthase activity	4.58E-04
30	GO:0032947: protein complex scaffold	4.58E-04
31	GO:0004176: ATP-dependent peptidase activity	4.95E-04
32	GO:0009001: serine O-acetyltransferase activity	6.57E-04
33	GO:0000254: C-4 methylsterol oxidase activity	6.57E-04
34	GO:0004792: thiosulfate sulfurtransferase activity	6.57E-04
35	GO:0047627: adenylylsulfatase activity	6.57E-04
36	GO:0051861: glycolipid binding	8.72E-04
37	GO:0015369: calcium:proton antiporter activity	8.72E-04
38	GO:0015368: calcium:cation antiporter activity	8.72E-04
39	GO:0016407: acetyltransferase activity	1.10E-03
40	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.10E-03
41	GO:0005275: amine transmembrane transporter activity	1.10E-03
42	GO:0008237: metallopeptidase activity	1.24E-03
43	GO:0000293: ferric-chelate reductase activity	1.35E-03
44	GO:0004559: alpha-mannosidase activity	1.61E-03
45	GO:0016157: sucrose synthase activity	1.61E-03
46	GO:0016621: cinnamoyl-CoA reductase activity	1.89E-03
47	GO:0004222: metalloendopeptidase activity	1.99E-03
48	GO:0016491: oxidoreductase activity	2.65E-03
49	GO:0016844: strictosidine synthase activity	3.16E-03
50	GO:0004713: protein tyrosine kinase activity	3.51E-03
51	GO:0004129: cytochrome-c oxidase activity	3.88E-03
52	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.93E-03
53	GO:0009982: pseudouridine synthase activity	4.64E-03
54	GO:0031072: heat shock protein binding	4.64E-03
55	GO:0000155: phosphorelay sensor kinase activity	4.64E-03
56	GO:0051082: unfolded protein binding	5.58E-03
57	GO:0016787: hydrolase activity	6.21E-03
58	GO:0051536: iron-sulfur cluster binding	6.32E-03
59	GO:0015079: potassium ion transmembrane transporter activity	6.76E-03
60	GO:0004812: aminoacyl-tRNA ligase activity	9.17E-03
61	GO:0047134: protein-disulfide reductase activity	9.17E-03
62	GO:0016887: ATPase activity	9.23E-03
63	GO:0008080: N-acetyltransferase activity	1.02E-02
64	GO:0004791: thioredoxin-disulfide reductase activity	1.07E-02
65	GO:0010181: FMN binding	1.07E-02
66	GO:0050662: coenzyme binding	1.07E-02
67	GO:0048038: quinone binding	1.18E-02
68	GO:0042802: identical protein binding	1.23E-02
69	GO:0004518: nuclease activity	1.24E-02
70	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.30E-02
71	GO:0008168: methyltransferase activity	1.44E-02
72	GO:0016788: hydrolase activity, acting on ester bonds	1.52E-02
73	GO:0004806: triglyceride lipase activity	1.72E-02
74	GO:0008236: serine-type peptidase activity	1.79E-02
75	GO:0005096: GTPase activator activity	1.92E-02
76	GO:0050897: cobalt ion binding	2.05E-02
77	GO:0005506: iron ion binding	2.62E-02
78	GO:0035091: phosphatidylinositol binding	2.78E-02
79	GO:0005198: structural molecule activity	2.85E-02
80	GO:0051287: NAD binding	3.01E-02
81	GO:0016298: lipase activity	3.33E-02
82	GO:0003777: microtubule motor activity	3.49E-02
83	GO:0045330: aspartyl esterase activity	3.49E-02
84	GO:0016301: kinase activity	3.83E-02
85	GO:0030599: pectinesterase activity	4.00E-02
86	GO:0015035: protein disulfide oxidoreductase activity	4.26E-02
87	GO:0004672: protein kinase activity	4.29E-02
88	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.73E-14
2	GO:0031969: chloroplast membrane	7.07E-05
3	GO:0009535: chloroplast thylakoid membrane	1.19E-04
4	GO:0042651: thylakoid membrane	4.51E-04
5	GO:0016605: PML body	4.58E-04
6	GO:0030286: dynein complex	8.72E-04
7	GO:0005773: vacuole	1.09E-03
8	GO:0030140: trans-Golgi network transport vesicle	1.35E-03
9	GO:0031359: integral component of chloroplast outer membrane	1.89E-03
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.82E-03
11	GO:0016604: nuclear body	3.16E-03
12	GO:0005875: microtubule associated complex	5.88E-03
13	GO:0009536: plastid	9.23E-03
14	GO:0009707: chloroplast outer membrane	1.85E-02
15	GO:0031977: thylakoid lumen	2.48E-02
16	GO:0031966: mitochondrial membrane	3.09E-02
17	GO:0010287: plastoglobule	4.71E-02