co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G33470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0090279: regulation of calcium ion import	0.00E+00
6	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
7	GO:0071474: cellular hyperosmotic response	0.00E+00
8	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
9	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
10	GO:0030155: regulation of cell adhesion	0.00E+00
11	GO:0010027: thylakoid membrane organization	2.25E-10
12	GO:0015979: photosynthesis	2.02E-08
13	GO:0019252: starch biosynthetic process	6.30E-06
14	GO:0009773: photosynthetic electron transport in photosystem I	1.23E-05
15	GO:0006546: glycine catabolic process	2.72E-05
16	GO:0010021: amylopectin biosynthetic process	2.72E-05
17	GO:0006109: regulation of carbohydrate metabolic process	2.72E-05
18	GO:0015994: chlorophyll metabolic process	2.72E-05
19	GO:0045038: protein import into chloroplast thylakoid membrane	4.37E-05
20	GO:0006418: tRNA aminoacylation for protein translation	4.81E-05
21	GO:0016117: carotenoid biosynthetic process	9.47E-05
22	GO:0010196: nonphotochemical quenching	1.20E-04
23	GO:0005978: glycogen biosynthetic process	1.53E-04
24	GO:0009409: response to cold	1.87E-04
25	GO:0006438: valyl-tRNA aminoacylation	1.91E-04
26	GO:0000476: maturation of 4.5S rRNA	1.91E-04
27	GO:0000967: rRNA 5'-end processing	1.91E-04
28	GO:0032544: plastid translation	1.91E-04
29	GO:0000481: maturation of 5S rRNA	1.91E-04
30	GO:0043007: maintenance of rDNA	1.91E-04
31	GO:1902458: positive regulation of stomatal opening	1.91E-04
32	GO:0010028: xanthophyll cycle	1.91E-04
33	GO:0034337: RNA folding	1.91E-04
34	GO:0005982: starch metabolic process	2.78E-04
35	GO:0043085: positive regulation of catalytic activity	3.78E-04
36	GO:0019388: galactose catabolic process	4.29E-04
37	GO:0018026: peptidyl-lysine monomethylation	4.29E-04
38	GO:0090342: regulation of cell aging	4.29E-04
39	GO:0097054: L-glutamate biosynthetic process	4.29E-04
40	GO:0016122: xanthophyll metabolic process	4.29E-04
41	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.29E-04
42	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.29E-04
43	GO:0051262: protein tetramerization	4.29E-04
44	GO:0034470: ncRNA processing	4.29E-04
45	GO:0010020: chloroplast fission	5.55E-04
46	GO:0090391: granum assembly	6.99E-04
47	GO:0006518: peptide metabolic process	6.99E-04
48	GO:0071492: cellular response to UV-A	6.99E-04
49	GO:0016050: vesicle organization	6.99E-04
50	GO:0005977: glycogen metabolic process	6.99E-04
51	GO:0048281: inflorescence morphogenesis	6.99E-04
52	GO:0006000: fructose metabolic process	6.99E-04
53	GO:0009793: embryo development ending in seed dormancy	7.35E-04
54	GO:0061077: chaperone-mediated protein folding	9.21E-04
55	GO:0006537: glutamate biosynthetic process	9.97E-04
56	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.97E-04
57	GO:0010148: transpiration	9.97E-04
58	GO:0009590: detection of gravity	9.97E-04
59	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	9.97E-04
60	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.97E-04
61	GO:0006020: inositol metabolic process	9.97E-04
62	GO:0051205: protein insertion into membrane	1.32E-03
63	GO:0006021: inositol biosynthetic process	1.32E-03
64	GO:0019676: ammonia assimilation cycle	1.32E-03
65	GO:0071486: cellular response to high light intensity	1.32E-03
66	GO:0019464: glycine decarboxylation via glycine cleavage system	1.32E-03
67	GO:0045727: positive regulation of translation	1.32E-03
68	GO:0006662: glycerol ether metabolic process	1.48E-03
69	GO:0016120: carotene biosynthetic process	1.68E-03
70	GO:0032543: mitochondrial translation	1.68E-03
71	GO:0016123: xanthophyll biosynthetic process	1.68E-03
72	GO:0045454: cell redox homeostasis	1.91E-03
73	GO:0042793: transcription from plastid promoter	2.07E-03
74	GO:0046855: inositol phosphate dephosphorylation	2.07E-03
75	GO:0042549: photosystem II stabilization	2.07E-03
76	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.07E-03
77	GO:0030488: tRNA methylation	2.49E-03
78	GO:0070370: cellular heat acclimation	2.93E-03
79	GO:0010103: stomatal complex morphogenesis	2.93E-03
80	GO:0071446: cellular response to salicylic acid stimulus	2.93E-03
81	GO:0015995: chlorophyll biosynthetic process	3.09E-03
82	GO:0016311: dephosphorylation	3.25E-03
83	GO:0009642: response to light intensity	3.40E-03
84	GO:0032508: DNA duplex unwinding	3.40E-03
85	GO:2000070: regulation of response to water deprivation	3.40E-03
86	GO:0000105: histidine biosynthetic process	3.40E-03
87	GO:0016559: peroxisome fission	3.40E-03
88	GO:0007186: G-protein coupled receptor signaling pathway	3.88E-03
89	GO:0001558: regulation of cell growth	3.88E-03
90	GO:0009657: plastid organization	3.88E-03
91	GO:0017004: cytochrome complex assembly	3.88E-03
92	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.88E-03
93	GO:0006002: fructose 6-phosphate metabolic process	3.88E-03
94	GO:0015996: chlorophyll catabolic process	3.88E-03
95	GO:0055114: oxidation-reduction process	4.08E-03
96	GO:0010206: photosystem II repair	4.40E-03
97	GO:0034599: cellular response to oxidative stress	4.52E-03
98	GO:0006779: porphyrin-containing compound biosynthetic process	4.93E-03
99	GO:0006631: fatty acid metabolic process	5.13E-03
100	GO:0009735: response to cytokinin	5.47E-03
101	GO:0006782: protoporphyrinogen IX biosynthetic process	5.48E-03
102	GO:0048829: root cap development	5.48E-03
103	GO:0009658: chloroplast organization	5.61E-03
104	GO:0019684: photosynthesis, light reaction	6.06E-03
105	GO:0009089: lysine biosynthetic process via diaminopimelate	6.06E-03
106	GO:0009073: aromatic amino acid family biosynthetic process	6.06E-03
107	GO:0000272: polysaccharide catabolic process	6.06E-03
108	GO:0018119: peptidyl-cysteine S-nitrosylation	6.06E-03
109	GO:0005983: starch catabolic process	6.66E-03
110	GO:0045037: protein import into chloroplast stroma	6.66E-03
111	GO:0006790: sulfur compound metabolic process	6.66E-03
112	GO:0010628: positive regulation of gene expression	7.28E-03
113	GO:0006006: glucose metabolic process	7.28E-03
114	GO:0006094: gluconeogenesis	7.28E-03
115	GO:0005986: sucrose biosynthetic process	7.28E-03
116	GO:0006364: rRNA processing	7.50E-03
117	GO:0010207: photosystem II assembly	7.91E-03
118	GO:0019253: reductive pentose-phosphate cycle	7.91E-03
119	GO:0005985: sucrose metabolic process	8.57E-03
120	GO:0046854: phosphatidylinositol phosphorylation	8.57E-03
121	GO:0043086: negative regulation of catalytic activity	8.88E-03
122	GO:0000162: tryptophan biosynthetic process	9.25E-03
123	GO:0009944: polarity specification of adaxial/abaxial axis	9.94E-03
124	GO:0009768: photosynthesis, light harvesting in photosystem I	1.07E-02
125	GO:0051302: regulation of cell division	1.07E-02
126	GO:0019915: lipid storage	1.14E-02
127	GO:0001944: vasculature development	1.29E-02
128	GO:0006412: translation	1.35E-02
129	GO:0009561: megagametogenesis	1.37E-02
130	GO:0042631: cellular response to water deprivation	1.53E-02
131	GO:0010182: sugar mediated signaling pathway	1.62E-02
132	GO:0007623: circadian rhythm	1.86E-02
133	GO:1901657: glycosyl compound metabolic process	2.06E-02
134	GO:0009416: response to light stimulus	2.50E-02
135	GO:0042254: ribosome biogenesis	2.93E-02
136	GO:0018298: protein-chromophore linkage	2.95E-02
137	GO:0009813: flavonoid biosynthetic process	3.05E-02
138	GO:0006499: N-terminal protein myristoylation	3.16E-02
139	GO:0010218: response to far red light	3.16E-02
140	GO:0009834: plant-type secondary cell wall biogenesis	3.16E-02
141	GO:0006810: transport	3.21E-02
142	GO:0005975: carbohydrate metabolic process	3.36E-02
143	GO:0009637: response to blue light	3.49E-02
144	GO:0009853: photorespiration	3.49E-02
145	GO:0010114: response to red light	4.18E-02
146	GO:0009744: response to sucrose	4.18E-02
147	GO:0009644: response to high light intensity	4.41E-02
148	GO:0009965: leaf morphogenesis	4.54E-02
149	GO:0006855: drug transmembrane transport	4.66E-02
150	GO:0031347: regulation of defense response	4.78E-02
151	GO:0009664: plant-type cell wall organization	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0016166: phytoene dehydrogenase activity	0.00E+00
3	GO:0004823: leucine-tRNA ligase activity	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
6	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
7	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
8	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
9	GO:0005528: FK506 binding	9.48E-07
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.87E-06
11	GO:0019843: rRNA binding	3.41E-05
12	GO:0004812: aminoacyl-tRNA ligase activity	9.47E-05
13	GO:0019203: carbohydrate phosphatase activity	1.91E-04
14	GO:0004832: valine-tRNA ligase activity	1.91E-04
15	GO:0016041: glutamate synthase (ferredoxin) activity	1.91E-04
16	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.91E-04
17	GO:0005227: calcium activated cation channel activity	1.91E-04
18	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.91E-04
19	GO:0050308: sugar-phosphatase activity	1.91E-04
20	GO:0008047: enzyme activator activity	3.27E-04
21	GO:0008934: inositol monophosphate 1-phosphatase activity	4.29E-04
22	GO:0052833: inositol monophosphate 4-phosphatase activity	4.29E-04
23	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.29E-04
24	GO:0004614: phosphoglucomutase activity	4.29E-04
25	GO:0019156: isoamylase activity	4.29E-04
26	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.29E-04
27	GO:0010291: carotene beta-ring hydroxylase activity	4.29E-04
28	GO:0047746: chlorophyllase activity	4.29E-04
29	GO:0010297: heteropolysaccharide binding	4.29E-04
30	GO:0004047: aminomethyltransferase activity	4.29E-04
31	GO:0052832: inositol monophosphate 3-phosphatase activity	4.29E-04
32	GO:0033201: alpha-1,4-glucan synthase activity	4.29E-04
33	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.29E-04
34	GO:0031072: heat shock protein binding	4.93E-04
35	GO:0002161: aminoacyl-tRNA editing activity	6.99E-04
36	GO:0005504: fatty acid binding	6.99E-04
37	GO:0004751: ribose-5-phosphate isomerase activity	6.99E-04
38	GO:0043169: cation binding	6.99E-04
39	GO:0004373: glycogen (starch) synthase activity	6.99E-04
40	GO:0004857: enzyme inhibitor activity	7.65E-04
41	GO:0016851: magnesium chelatase activity	9.97E-04
42	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.97E-04
43	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.97E-04
44	GO:0047134: protein-disulfide reductase activity	1.28E-03
45	GO:0019199: transmembrane receptor protein kinase activity	1.32E-03
46	GO:0045430: chalcone isomerase activity	1.32E-03
47	GO:0009011: starch synthase activity	1.32E-03
48	GO:0042277: peptide binding	1.32E-03
49	GO:0016279: protein-lysine N-methyltransferase activity	1.32E-03
50	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.32E-03
51	GO:0004045: aminoacyl-tRNA hydrolase activity	1.32E-03
52	GO:0004791: thioredoxin-disulfide reductase activity	1.59E-03
53	GO:0051082: unfolded protein binding	1.61E-03
54	GO:0004040: amidase activity	1.68E-03
55	GO:0051538: 3 iron, 4 sulfur cluster binding	1.68E-03
56	GO:0004556: alpha-amylase activity	2.07E-03
57	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.07E-03
58	GO:2001070: starch binding	2.07E-03
59	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.22E-03
60	GO:0008483: transaminase activity	2.34E-03
61	GO:0005261: cation channel activity	2.49E-03
62	GO:0051920: peroxiredoxin activity	2.49E-03
63	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.49E-03
64	GO:0016168: chlorophyll binding	2.78E-03
65	GO:0004033: aldo-keto reductase (NADP) activity	3.40E-03
66	GO:0016209: antioxidant activity	3.40E-03
67	GO:0008173: RNA methyltransferase activity	3.88E-03
68	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.40E-03
69	GO:0000287: magnesium ion binding	5.48E-03
70	GO:0044183: protein binding involved in protein folding	6.06E-03
71	GO:0005198: structural molecule activity	6.26E-03
72	GO:0016787: hydrolase activity	6.33E-03
73	GO:0004565: beta-galactosidase activity	7.28E-03
74	GO:0016491: oxidoreductase activity	8.35E-03
75	GO:0031409: pigment binding	9.25E-03
76	GO:0015035: protein disulfide oxidoreductase activity	1.10E-02
77	GO:0003924: GTPase activity	1.21E-02
78	GO:0022891: substrate-specific transmembrane transporter activity	1.29E-02
79	GO:0005525: GTP binding	1.33E-02
80	GO:0003756: protein disulfide isomerase activity	1.37E-02
81	GO:0050662: coenzyme binding	1.70E-02
82	GO:0003735: structural constituent of ribosome	1.70E-02
83	GO:0048038: quinone binding	1.88E-02
84	GO:0102483: scopolin beta-glucosidase activity	2.74E-02
85	GO:0008168: methyltransferase activity	2.77E-02
86	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.95E-02
87	GO:0015238: drug transmembrane transporter activity	3.05E-02
88	GO:0003723: RNA binding	3.11E-02
89	GO:0004222: metalloendopeptidase activity	3.16E-02
90	GO:0003746: translation elongation factor activity	3.49E-02
91	GO:0003993: acid phosphatase activity	3.60E-02
92	GO:0008422: beta-glucosidase activity	3.71E-02
93	GO:0043621: protein self-association	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009507: chloroplast	3.09E-63
4	GO:0009534: chloroplast thylakoid	4.08E-34
5	GO:0009570: chloroplast stroma	7.03E-32
6	GO:0009535: chloroplast thylakoid membrane	9.58E-25
7	GO:0009941: chloroplast envelope	5.89E-23
8	GO:0009543: chloroplast thylakoid lumen	2.48E-15
9	GO:0010319: stromule	8.09E-09
10	GO:0009579: thylakoid	1.07E-08
11	GO:0031977: thylakoid lumen	1.09E-07
12	GO:0030095: chloroplast photosystem II	4.34E-07
13	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.74E-06
14	GO:0009508: plastid chromosome	1.94E-05
15	GO:0010287: plastoglobule	3.02E-05
16	GO:0009654: photosystem II oxygen evolving complex	4.81E-05
17	GO:0005840: ribosome	8.96E-05
18	GO:0019898: extrinsic component of membrane	1.46E-04
19	GO:0009501: amyloplast	1.53E-04
20	GO:0009515: granal stacked thylakoid	1.91E-04
21	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.91E-04
22	GO:0009295: nucleoid	2.30E-04
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.33E-04
24	GO:0031969: chloroplast membrane	2.68E-04
25	GO:0009509: chromoplast	6.99E-04
26	GO:0009528: plastid inner membrane	6.99E-04
27	GO:0010007: magnesium chelatase complex	6.99E-04
28	GO:0048046: apoplast	7.25E-04
29	GO:0042651: thylakoid membrane	8.41E-04
30	GO:0005960: glycine cleavage complex	9.97E-04
31	GO:0009527: plastid outer membrane	1.32E-03
32	GO:0009706: chloroplast inner membrane	1.61E-03
33	GO:0016272: prefoldin complex	2.49E-03
34	GO:0009538: photosystem I reaction center	3.40E-03
35	GO:0009707: chloroplast outer membrane	3.42E-03
36	GO:0032040: small-subunit processome	6.66E-03
37	GO:0030076: light-harvesting complex	8.57E-03
38	GO:0009532: plastid stroma	1.14E-02
39	GO:0009522: photosystem I	1.70E-02
40	GO:0009523: photosystem II	1.79E-02
41	GO:0030529: intracellular ribonucleoprotein complex	2.44E-02
42	GO:0015934: large ribosomal subunit	3.27E-02