co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G33010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:0005996: monosaccharide metabolic process	0.00E+00
5	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
6	GO:0016118: carotenoid catabolic process	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
9	GO:0070125: mitochondrial translational elongation	0.00E+00
10	GO:0015979: photosynthesis	4.16E-21
11	GO:0009768: photosynthesis, light harvesting in photosystem I	5.56E-13
12	GO:0018298: protein-chromophore linkage	2.83E-12
13	GO:0010196: nonphotochemical quenching	1.64E-11
14	GO:0010027: thylakoid membrane organization	6.44E-11
15	GO:0009644: response to high light intensity	6.29E-08
16	GO:0009773: photosynthetic electron transport in photosystem I	7.82E-08
17	GO:0010207: photosystem II assembly	2.02E-07
18	GO:0015995: chlorophyll biosynthetic process	3.27E-07
19	GO:0009769: photosynthesis, light harvesting in photosystem II	9.13E-07
20	GO:0009645: response to low light intensity stimulus	9.13E-07
21	GO:0010206: photosystem II repair	2.92E-06
22	GO:0006000: fructose metabolic process	4.13E-06
23	GO:0090391: granum assembly	4.13E-06
24	GO:0006096: glycolytic process	5.53E-06
25	GO:0006006: glucose metabolic process	1.11E-05
26	GO:0006094: gluconeogenesis	1.11E-05
27	GO:0019253: reductive pentose-phosphate cycle	1.37E-05
28	GO:0009735: response to cytokinin	1.69E-05
29	GO:0010218: response to far red light	1.71E-05
30	GO:0019464: glycine decarboxylation via glycine cleavage system	1.80E-05
31	GO:0006546: glycine catabolic process	1.80E-05
32	GO:0006021: inositol biosynthetic process	1.80E-05
33	GO:0010114: response to red light	3.77E-05
34	GO:0042549: photosystem II stabilization	4.37E-05
35	GO:0009409: response to cold	6.85E-05
36	GO:0006002: fructose 6-phosphate metabolic process	1.33E-04
37	GO:0043953: protein transport by the Tat complex	1.50E-04
38	GO:0051775: response to redox state	1.50E-04
39	GO:0000481: maturation of 5S rRNA	1.50E-04
40	GO:0065002: intracellular protein transmembrane transport	1.50E-04
41	GO:0080093: regulation of photorespiration	1.50E-04
42	GO:0043609: regulation of carbon utilization	1.50E-04
43	GO:0031998: regulation of fatty acid beta-oxidation	1.50E-04
44	GO:1902458: positive regulation of stomatal opening	1.50E-04
45	GO:0034337: RNA folding	1.50E-04
46	GO:0042742: defense response to bacterium	1.60E-04
47	GO:0006098: pentose-phosphate shunt	1.63E-04
48	GO:0010205: photoinhibition	1.96E-04
49	GO:0019684: photosynthesis, light reaction	2.70E-04
50	GO:0009637: response to blue light	3.38E-04
51	GO:0035304: regulation of protein dephosphorylation	3.42E-04
52	GO:0009629: response to gravity	3.42E-04
53	GO:0016124: xanthophyll catabolic process	3.42E-04
54	GO:0019388: galactose catabolic process	3.42E-04
55	GO:0097054: L-glutamate biosynthetic process	3.42E-04
56	GO:0006729: tetrahydrobiopterin biosynthetic process	3.42E-04
57	GO:0016121: carotene catabolic process	3.42E-04
58	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.42E-04
59	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.42E-04
60	GO:0006108: malate metabolic process	3.54E-04
61	GO:0055114: oxidation-reduction process	5.20E-04
62	GO:0071492: cellular response to UV-A	5.61E-04
63	GO:0009658: chloroplast organization	6.31E-04
64	GO:0061077: chaperone-mediated protein folding	6.67E-04
65	GO:0009269: response to desiccation	6.67E-04
66	GO:0006107: oxaloacetate metabolic process	8.03E-04
67	GO:0006537: glutamate biosynthetic process	8.03E-04
68	GO:0009590: detection of gravity	8.03E-04
69	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.03E-04
70	GO:0006020: inositol metabolic process	8.03E-04
71	GO:0071484: cellular response to light intensity	8.03E-04
72	GO:0009416: response to light stimulus	8.29E-04
73	GO:0006109: regulation of carbohydrate metabolic process	1.06E-03
74	GO:0045727: positive regulation of translation	1.06E-03
75	GO:0015994: chlorophyll metabolic process	1.06E-03
76	GO:0030104: water homeostasis	1.06E-03
77	GO:0006734: NADH metabolic process	1.06E-03
78	GO:0019676: ammonia assimilation cycle	1.06E-03
79	GO:0015976: carbon utilization	1.06E-03
80	GO:0071486: cellular response to high light intensity	1.06E-03
81	GO:0010236: plastoquinone biosynthetic process	1.35E-03
82	GO:0045038: protein import into chloroplast thylakoid membrane	1.35E-03
83	GO:0006097: glyoxylate cycle	1.35E-03
84	GO:0016123: xanthophyll biosynthetic process	1.35E-03
85	GO:0006810: transport	1.53E-03
86	GO:0046855: inositol phosphate dephosphorylation	1.65E-03
87	GO:0009635: response to herbicide	1.65E-03
88	GO:0050665: hydrogen peroxide biosynthetic process	1.65E-03
89	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.65E-03
90	GO:0010189: vitamin E biosynthetic process	1.98E-03
91	GO:0009854: oxidative photosynthetic carbon pathway	1.98E-03
92	GO:0009772: photosynthetic electron transport in photosystem II	2.33E-03
93	GO:0071446: cellular response to salicylic acid stimulus	2.33E-03
94	GO:1900057: positive regulation of leaf senescence	2.33E-03
95	GO:0009813: flavonoid biosynthetic process	2.57E-03
96	GO:0005978: glycogen biosynthetic process	2.70E-03
97	GO:0009642: response to light intensity	2.70E-03
98	GO:0032508: DNA duplex unwinding	2.70E-03
99	GO:2000070: regulation of response to water deprivation	2.70E-03
100	GO:0031540: regulation of anthocyanin biosynthetic process	2.70E-03
101	GO:0071482: cellular response to light stimulus	3.08E-03
102	GO:0015996: chlorophyll catabolic process	3.08E-03
103	GO:0007186: G-protein coupled receptor signaling pathway	3.08E-03
104	GO:0032544: plastid translation	3.08E-03
105	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.08E-03
106	GO:0009853: photorespiration	3.09E-03
107	GO:0006099: tricarboxylic acid cycle	3.23E-03
108	GO:0090333: regulation of stomatal closure	3.49E-03
109	GO:0006754: ATP biosynthetic process	3.49E-03
110	GO:0009793: embryo development ending in seed dormancy	3.75E-03
111	GO:0009744: response to sucrose	3.98E-03
112	GO:0009073: aromatic amino acid family biosynthetic process	4.80E-03
113	GO:0043085: positive regulation of catalytic activity	4.80E-03
114	GO:0000272: polysaccharide catabolic process	4.80E-03
115	GO:0018119: peptidyl-cysteine S-nitrosylation	4.80E-03
116	GO:0006790: sulfur compound metabolic process	5.27E-03
117	GO:0005983: starch catabolic process	5.27E-03
118	GO:0045037: protein import into chloroplast stroma	5.27E-03
119	GO:0006364: rRNA processing	5.35E-03
120	GO:0010224: response to UV-B	5.54E-03
121	GO:0009767: photosynthetic electron transport chain	5.75E-03
122	GO:0005986: sucrose biosynthetic process	5.75E-03
123	GO:0005975: carbohydrate metabolic process	5.89E-03
124	GO:0046686: response to cadmium ion	6.17E-03
125	GO:0006302: double-strand break repair	6.25E-03
126	GO:0005985: sucrose metabolic process	6.77E-03
127	GO:0046854: phosphatidylinositol phosphorylation	6.77E-03
128	GO:0006636: unsaturated fatty acid biosynthetic process	7.30E-03
129	GO:0051321: meiotic cell cycle	8.97E-03
130	GO:0071215: cellular response to abscisic acid stimulus	1.02E-02
131	GO:0009561: megagametogenesis	1.08E-02
132	GO:0016117: carotenoid biosynthetic process	1.14E-02
133	GO:0042631: cellular response to water deprivation	1.20E-02
134	GO:0006662: glycerol ether metabolic process	1.27E-02
135	GO:0010182: sugar mediated signaling pathway	1.27E-02
136	GO:0015986: ATP synthesis coupled proton transport	1.34E-02
137	GO:0006814: sodium ion transport	1.34E-02
138	GO:0009791: post-embryonic development	1.41E-02
139	GO:0019252: starch biosynthetic process	1.41E-02
140	GO:0008654: phospholipid biosynthetic process	1.41E-02
141	GO:0071554: cell wall organization or biogenesis	1.47E-02
142	GO:0009611: response to wounding	1.68E-02
143	GO:0009567: double fertilization forming a zygote and endosperm	1.69E-02
144	GO:0051607: defense response to virus	1.84E-02
145	GO:0016311: dephosphorylation	2.23E-02
146	GO:0006499: N-terminal protein myristoylation	2.48E-02
147	GO:0080167: response to karrikin	2.54E-02
148	GO:0010119: regulation of stomatal movement	2.56E-02
149	GO:0034599: cellular response to oxidative stress	2.83E-02
150	GO:0045454: cell redox homeostasis	3.04E-02
151	GO:0042542: response to hydrogen peroxide	3.19E-02
152	GO:0009926: auxin polar transport	3.28E-02
153	GO:0031347: regulation of defense response	3.76E-02
154	GO:0006979: response to oxidative stress	3.97E-02
155	GO:0009733: response to auxin	4.53E-02
156	GO:0043086: negative regulation of catalytic activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
3	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0046408: chlorophyll synthetase activity	0.00E+00
10	GO:0051738: xanthophyll binding	0.00E+00
11	GO:0016168: chlorophyll binding	1.32E-14
12	GO:0031409: pigment binding	2.33E-13
13	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.11E-06
14	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.63E-06
15	GO:0016851: magnesium chelatase activity	9.63E-06
16	GO:0008266: poly(U) RNA binding	1.37E-05
17	GO:0003959: NADPH dehydrogenase activity	2.93E-05
18	GO:0004332: fructose-bisphosphate aldolase activity	4.37E-05
19	GO:0016615: malate dehydrogenase activity	4.37E-05
20	GO:2001070: starch binding	4.37E-05
21	GO:0030060: L-malate dehydrogenase activity	6.14E-05
22	GO:0050308: sugar-phosphatase activity	1.50E-04
23	GO:0010242: oxygen evolving activity	1.50E-04
24	GO:0019203: carbohydrate phosphatase activity	1.50E-04
25	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	1.50E-04
26	GO:0045485: omega-6 fatty acid desaturase activity	1.50E-04
27	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	1.50E-04
28	GO:0008746: NAD(P)+ transhydrogenase activity	1.50E-04
29	GO:0016041: glutamate synthase (ferredoxin) activity	1.50E-04
30	GO:0045486: naringenin 3-dioxygenase activity	1.50E-04
31	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.50E-04
32	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.50E-04
33	GO:0016491: oxidoreductase activity	3.14E-04
34	GO:0052832: inositol monophosphate 3-phosphatase activity	3.42E-04
35	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.42E-04
36	GO:0016630: protochlorophyllide reductase activity	3.42E-04
37	GO:0008934: inositol monophosphate 1-phosphatase activity	3.42E-04
38	GO:0052833: inositol monophosphate 4-phosphatase activity	3.42E-04
39	GO:0004614: phosphoglucomutase activity	3.42E-04
40	GO:0004512: inositol-3-phosphate synthase activity	3.42E-04
41	GO:0008967: phosphoglycolate phosphatase activity	3.42E-04
42	GO:0010291: carotene beta-ring hydroxylase activity	3.42E-04
43	GO:0047746: chlorophyllase activity	3.42E-04
44	GO:0010297: heteropolysaccharide binding	3.42E-04
45	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.42E-04
46	GO:0004047: aminomethyltransferase activity	3.42E-04
47	GO:0004565: beta-galactosidase activity	3.54E-04
48	GO:0031072: heat shock protein binding	3.54E-04
49	GO:0005528: FK506 binding	5.53E-04
50	GO:0003913: DNA photolyase activity	5.61E-04
51	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	5.61E-04
52	GO:0004324: ferredoxin-NADP+ reductase activity	5.61E-04
53	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.71E-04
54	GO:0022891: substrate-specific transmembrane transporter activity	7.93E-04
55	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	8.03E-04
56	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	8.03E-04
57	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	8.03E-04
58	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	8.03E-04
59	GO:0008508: bile acid:sodium symporter activity	8.03E-04
60	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	8.03E-04
61	GO:0008891: glycolate oxidase activity	1.06E-03
62	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.06E-03
63	GO:0051538: 3 iron, 4 sulfur cluster binding	1.35E-03
64	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.35E-03
65	GO:0019843: rRNA binding	1.40E-03
66	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.98E-03
67	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.98E-03
68	GO:0046872: metal ion binding	2.25E-03
69	GO:0009881: photoreceptor activity	2.33E-03
70	GO:0008135: translation factor activity, RNA binding	3.08E-03
71	GO:0003746: translation elongation factor activity	3.09E-03
72	GO:0071949: FAD binding	3.49E-03
73	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.49E-03
74	GO:0050661: NADP binding	3.52E-03
75	GO:0000287: magnesium ion binding	3.56E-03
76	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	3.91E-03
77	GO:0008047: enzyme activator activity	4.35E-03
78	GO:0030234: enzyme regulator activity	4.35E-03
79	GO:0051287: NAD binding	4.81E-03
80	GO:0004089: carbonate dehydratase activity	5.75E-03
81	GO:0051082: unfolded protein binding	7.61E-03
82	GO:0031418: L-ascorbic acid binding	7.84E-03
83	GO:0003954: NADH dehydrogenase activity	7.84E-03
84	GO:0004857: enzyme inhibitor activity	7.84E-03
85	GO:0008408: 3'-5' exonuclease activity	8.97E-03
86	GO:0005509: calcium ion binding	9.64E-03
87	GO:0003756: protein disulfide isomerase activity	1.08E-02
88	GO:0047134: protein-disulfide reductase activity	1.14E-02
89	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.27E-02
90	GO:0005515: protein binding	1.33E-02
91	GO:0050662: coenzyme binding	1.34E-02
92	GO:0010181: FMN binding	1.34E-02
93	GO:0004791: thioredoxin-disulfide reductase activity	1.34E-02
94	GO:0048038: quinone binding	1.47E-02
95	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.62E-02
96	GO:0042802: identical protein binding	1.68E-02
97	GO:0008483: transaminase activity	1.76E-02
98	GO:0016413: O-acetyltransferase activity	1.84E-02
99	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.23E-02
100	GO:0030145: manganese ion binding	2.56E-02
101	GO:0003993: acid phosphatase activity	2.83E-02
102	GO:0016787: hydrolase activity	3.38E-02
103	GO:0005198: structural molecule activity	3.56E-02
104	GO:0003924: GTPase activity	3.74E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0042579: microbody	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0009507: chloroplast	2.91E-54
6	GO:0009534: chloroplast thylakoid	4.12E-47
7	GO:0009535: chloroplast thylakoid membrane	7.77E-47
8	GO:0009941: chloroplast envelope	4.76E-39
9	GO:0009579: thylakoid	1.02E-34
10	GO:0009570: chloroplast stroma	5.81E-27
11	GO:0010287: plastoglobule	2.21E-16
12	GO:0009543: chloroplast thylakoid lumen	1.55E-14
13	GO:0048046: apoplast	2.23E-14
14	GO:0009522: photosystem I	8.58E-12
15	GO:0031977: thylakoid lumen	8.66E-10
16	GO:0009523: photosystem II	9.18E-10
17	GO:0030095: chloroplast photosystem II	1.98E-09
18	GO:0030076: light-harvesting complex	2.80E-09
19	GO:0009517: PSII associated light-harvesting complex II	7.02E-08
20	GO:0010319: stromule	1.50E-07
21	GO:0009654: photosystem II oxygen evolving complex	5.63E-07
22	GO:0019898: extrinsic component of membrane	3.05E-06
23	GO:0010007: magnesium chelatase complex	4.13E-06
24	GO:0005960: glycine cleavage complex	9.63E-06
25	GO:0042651: thylakoid membrane	2.82E-05
26	GO:0016020: membrane	5.07E-05
27	GO:0009538: photosystem I reaction center	1.06E-04
28	GO:0009706: chloroplast inner membrane	1.27E-04
29	GO:0031969: chloroplast membrane	1.37E-04
30	GO:0009782: photosystem I antenna complex	1.50E-04
31	GO:0000791: euchromatin	1.50E-04
32	GO:0009783: photosystem II antenna complex	1.50E-04
33	GO:0031361: integral component of thylakoid membrane	1.50E-04
34	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.63E-04
35	GO:0031304: intrinsic component of mitochondrial inner membrane	3.42E-04
36	GO:0030870: Mre11 complex	3.42E-04
37	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.42E-04
38	GO:0009528: plastid inner membrane	5.61E-04
39	GO:0033281: TAT protein transport complex	5.61E-04
40	GO:0009544: chloroplast ATP synthase complex	1.06E-03
41	GO:0009527: plastid outer membrane	1.06E-03
42	GO:0055035: plastid thylakoid membrane	1.35E-03
43	GO:0000795: synaptonemal complex	1.35E-03
44	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.65E-03
45	GO:0008180: COP9 signalosome	3.49E-03
46	GO:0022626: cytosolic ribosome	3.49E-03
47	GO:0005777: peroxisome	4.61E-03
48	GO:0016021: integral component of membrane	5.02E-03
49	GO:0032040: small-subunit processome	5.27E-03
50	GO:0009508: plastid chromosome	5.75E-03
51	GO:0009532: plastid stroma	8.97E-03
52	GO:0005759: mitochondrial matrix	1.20E-02
53	GO:0000785: chromatin	1.55E-02
54	GO:0009295: nucleoid	1.76E-02
55	GO:0009707: chloroplast outer membrane	2.31E-02
56	GO:0019005: SCF ubiquitin ligase complex	2.31E-02
57	GO:0000502: proteasome complex	4.05E-02
58	GO:0005840: ribosome	4.17E-02
59	GO:0005773: vacuole	4.92E-02